Wall clock time and date at job start Mon Mar 30 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46591 * 2 1 4 4 H 1.09000 * 109.47089 * 55.00192 * 3 2 1 5 5 C 1.52996 * 109.47314 * 294.99804 * 3 2 1 6 6 C 1.52999 * 109.47067 * 174.99835 * 3 2 1 7 7 N 1.46900 * 109.47378 * 185.00074 * 6 3 2 8 8 C 1.46903 * 110.99973 * 179.97438 * 7 6 3 9 9 H 1.08998 * 109.47105 * 325.00211 * 8 7 6 10 10 C 1.50708 * 109.46547 * 85.00107 * 8 7 6 11 11 H 1.07991 * 120.00034 * 35.11144 * 10 8 7 12 12 C 1.37877 * 119.99765 * 215.10658 * 10 8 7 13 13 N 1.31516 * 119.99922 * 2.06183 * 12 10 8 14 14 Si 1.86794 * 120.00343 * 182.06531 * 12 10 8 15 15 H 1.48499 * 109.47252 * 89.99687 * 14 12 10 16 16 H 1.48498 * 109.47322 * 210.00372 * 14 12 10 17 17 H 1.48508 * 109.46915 * 329.99764 * 14 12 10 18 18 C 1.50695 * 109.47019 * 204.99565 * 8 7 6 19 19 C 1.38239 * 120.00251 * 314.00599 * 18 8 7 20 20 C 1.38232 * 119.99629 * 179.80985 * 19 18 8 21 21 C 1.38239 * 120.00193 * 0.39131 * 20 19 18 22 22 C 1.38229 * 119.99977 * 359.85477 * 21 20 19 23 23 C 1.38234 * 119.99561 * 134.26948 * 18 8 7 24 24 H 1.09007 * 109.46750 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47628 * 299.99604 * 1 2 3 26 26 H 1.08995 * 109.47489 * 60.00263 * 1 2 3 27 27 H 1.09001 * 109.47628 * 240.00396 * 2 1 3 28 28 H 1.08995 * 109.47489 * 119.99736 * 2 1 3 29 29 H 1.09005 * 109.46832 * 60.00075 * 5 3 2 30 30 H 1.08994 * 109.47246 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47359 * 300.00223 * 5 3 2 32 32 H 1.09002 * 109.47363 * 305.00128 * 6 3 2 33 33 H 1.09007 * 109.47030 * 64.99685 * 6 3 2 34 34 H 1.00894 * 110.99610 * 56.04893 * 7 6 3 35 35 H 0.97005 * 120.00262 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.00067 * 359.97438 * 19 18 8 37 37 H 1.08004 * 120.00000 * 180.22470 * 20 19 18 38 38 H 1.08002 * 119.99568 * 179.83821 * 21 20 19 39 39 H 1.08004 * 119.99999 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00213 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4446 0.1258 7 7 4.0443 2.8278 0.2462 8 6 5.5076 2.8687 0.3698 9 1 5.8483 2.0045 0.9400 10 6 6.1285 2.8413 -1.0032 11 1 5.6406 3.3414 -1.8266 12 6 7.3196 2.1777 -1.2079 13 7 7.8933 1.5346 -0.2145 14 14 8.1187 2.1922 -2.8962 15 1 9.0356 3.3558 -3.0000 16 1 8.8879 0.9369 -3.0907 17 1 7.0678 2.2955 -3.9404 18 6 5.9165 4.1329 1.0808 19 6 5.3576 5.3433 0.7152 20 6 5.7299 6.5023 1.3702 21 6 6.6669 6.4521 2.3853 22 6 7.2295 5.2425 2.7474 23 6 6.8545 4.0829 2.0950 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.5487 2.1252 -1.3969 30 1 1.9979 3.1544 -1.3071 31 1 2.0697 1.5877 -2.1492 32 1 3.8570 0.8803 1.0114 33 1 4.0029 0.9838 -0.7596 34 1 3.6030 3.2972 1.0226 35 1 8.7315 1.0680 -0.3584 36 1 4.6282 5.3830 -0.0802 37 1 5.2906 7.4474 1.0871 38 1 6.9596 7.3581 2.8952 39 1 7.9620 5.2034 3.5401 40 1 7.2939 3.1378 2.3780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:40 Heat of formation + Delta-G solvation = -13.567210 kcal Electronic energy + Delta-G solvation = -17997.642705 eV Core-core repulsion = 15389.488951 eV Total energy + Delta-G solvation = -2608.153754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05890 -38.32963 -36.15400 -34.09630 -32.03664 -31.52790 -30.07585 -28.24893 -26.74143 -24.65116 -23.42785 -22.78139 -21.64781 -20.72142 -18.47843 -17.49326 -16.72845 -16.26175 -16.09317 -15.71412 -15.51424 -15.24794 -14.72519 -14.37646 -14.07281 -13.76770 -13.74369 -13.39846 -13.05717 -12.90977 -12.84320 -12.73898 -12.58442 -12.25175 -12.05078 -11.85667 -11.56962 -11.43568 -11.40187 -11.28907 -11.23069 -10.58404 -9.58830 -9.32049 -9.02012 -8.10134 -6.21450 0.73276 0.76715 1.37552 1.38236 1.48373 2.39755 3.05791 3.26435 3.61269 4.01429 4.12615 4.24540 4.30508 4.33133 4.43949 4.49828 4.59942 4.71164 4.75772 4.88777 4.93031 4.95147 4.99083 5.04940 5.17433 5.22213 5.26252 5.28064 5.37773 5.40453 5.47035 5.61129 5.66887 5.71648 5.79445 5.82834 6.08911 6.18301 6.36865 6.47146 6.93426 7.03674 7.45076 8.92119 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.007979 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.399045 B = 3508.397745 C = 4822.933918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.079 4.079 4 H 0.071 0.929 5 C -0.128 4.128 6 C 0.081 3.919 7 N -0.675 5.675 8 C 0.242 3.758 9 H 0.001 0.999 10 C -0.491 4.491 11 H 0.051 0.949 12 C 0.014 3.986 13 N -0.920 5.920 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.000 1.000 33 H 0.043 0.957 34 H 0.321 0.679 35 H 0.260 0.740 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 3.619 3.249 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.098 4.098 4 H 0.089 0.911 5 C -0.186 4.186 6 C -0.048 4.048 7 N -0.304 5.304 8 C 0.134 3.866 9 H 0.019 0.981 10 C -0.530 4.530 11 H 0.069 0.931 12 C -0.185 4.185 13 N -0.559 5.559 14 Si 0.776 3.224 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.193 1.193 18 C -0.064 4.064 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.138 0.862 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.681 3.597 2.593 10.648 hybrid contribution 1.258 -0.861 0.024 1.525 sum -8.423 2.736 2.616 9.234 Atomic orbital electron populations 1.21756 0.94084 1.02045 1.02279 1.21536 0.97224 0.95494 1.01434 1.21109 0.92853 0.96678 0.99131 0.91102 1.21654 1.00522 1.00529 0.95867 1.21791 0.95363 0.89554 0.98128 1.60679 1.06726 1.15509 1.47529 1.18127 0.84276 0.90134 0.94109 0.98128 1.21186 1.05358 1.31887 0.94585 0.93115 1.25703 0.97983 0.94793 1.00070 1.70035 1.18577 1.34523 1.32810 0.85671 0.78585 0.77334 0.80788 1.20404 1.20921 1.19267 1.20600 0.95680 0.97202 0.92933 1.21032 1.00809 0.92032 0.99869 1.21403 0.98260 0.98221 0.96578 1.21300 0.98094 0.97836 0.98733 1.21284 1.00502 0.92619 1.00426 1.21067 0.98791 0.98346 0.97491 0.92036 0.92363 0.92024 0.92712 0.92685 0.91417 0.92991 0.94403 0.98184 0.93860 0.86191 0.93092 0.86441 0.83918 0.83575 0.85013 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.67 71.98 0.70 -2.19 16 2 C -0.12 -3.08 5.40 30.60 0.17 -2.91 16 3 C -0.08 -2.37 2.53 -10.79 -0.03 -2.40 16 4 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.13 -3.75 8.84 71.98 0.64 -3.11 16 6 C 0.08 3.25 4.87 86.30 0.42 3.67 16 7 N -0.67 -28.74 5.30 -499.34 -2.65 -31.39 16 8 C 0.24 12.20 2.34 43.42 0.10 12.30 16 9 H 0.00 0.05 6.73 -2.39 -0.02 0.03 16 10 C -0.49 -27.37 8.30 25.60 0.21 -27.16 16 11 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 12 C 0.01 0.77 5.46 84.65 0.46 1.23 16 13 N -0.92 -53.99 12.78 21.45 0.27 -53.71 16 14 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 C -0.06 -2.90 4.64 -19.87 -0.09 -3.00 16 19 C -0.12 -4.78 9.08 22.27 0.20 -4.57 16 20 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 21 C -0.14 -4.45 10.05 22.27 0.22 -4.23 16 22 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 23 C -0.14 -6.16 9.67 22.27 0.22 -5.94 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.17 6.56 -2.39 -0.02 1.16 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.59 6.57 -2.38 -0.02 1.57 16 30 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.00 0.00 8.05 -2.39 -0.02 -0.02 16 33 H 0.04 1.98 8.00 -2.38 -0.02 1.96 16 34 H 0.32 12.53 8.15 -89.70 -0.73 11.80 16 35 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.12 4.69 7.91 -2.91 -0.02 4.66 16 37 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.09 4.45 8.00 -2.91 -0.02 4.42 16 Total: -1.00 -61.70 326.74 3.58 -58.13 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.26 Total: 26.74 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 3.66 Total: -46.73 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.37 Total: -85.10 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.70 3.58 -58.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.561 kcal (2) G-P(sol) polarization free energy of solvation -61.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds