Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47111 * 304.99511 * 3 2 1 5 5 C 1.52995 * 109.47323 * 65.00225 * 3 2 1 6 6 C 1.52999 * 109.46932 * 185.00122 * 3 2 1 7 7 N 1.46898 * 109.47203 * 174.99857 * 6 3 2 8 8 C 1.46899 * 111.00202 * 179.97438 * 7 6 3 9 9 H 1.08994 * 109.47521 * 35.00262 * 8 7 6 10 10 C 1.50706 * 109.47239 * 275.00219 * 8 7 6 11 11 H 1.08000 * 119.99617 * 327.52506 * 10 8 7 12 12 C 1.37876 * 119.99692 * 147.52965 * 10 8 7 13 13 N 1.31512 * 120.00585 * 0.68508 * 12 10 8 14 14 Si 1.86802 * 119.99673 * 180.96303 * 12 10 8 15 15 H 1.48499 * 109.47312 * 179.72151 * 14 12 10 16 16 H 1.48504 * 109.47115 * 299.72114 * 14 12 10 17 17 H 1.48502 * 109.47207 * 59.71834 * 14 12 10 18 18 C 1.50703 * 109.47321 * 155.00296 * 8 7 6 19 19 C 1.38240 * 119.99732 * 46.42798 * 18 8 7 20 20 C 1.38236 * 119.99627 * 179.79314 * 19 18 8 21 21 C 1.38234 * 120.00045 * 0.43685 * 20 19 18 22 22 C 1.38229 * 120.00272 * 359.81787 * 21 20 19 23 23 C 1.38229 * 120.00152 * 226.70739 * 18 8 7 24 24 H 1.08998 * 109.47346 * 59.99881 * 1 2 3 25 25 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47115 * 300.00146 * 1 2 3 27 27 H 1.09003 * 109.47168 * 240.00533 * 2 1 3 28 28 H 1.08998 * 109.47346 * 120.00119 * 2 1 3 29 29 H 1.09000 * 109.47106 * 59.99487 * 5 3 2 30 30 H 1.08997 * 109.47351 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.46940 * 300.00397 * 5 3 2 32 32 H 1.09005 * 109.47578 * 55.00335 * 6 3 2 33 33 H 1.09001 * 109.47496 * 294.99961 * 6 3 2 34 34 H 1.00901 * 111.00047 * 303.95456 * 7 6 3 35 35 H 0.96996 * 119.99430 * 0.33730 * 13 12 10 36 36 H 1.07999 * 119.99982 * 359.97438 * 19 18 8 37 37 H 1.08002 * 119.99835 * 180.27794 * 20 19 18 38 38 H 1.08006 * 119.99867 * 179.83752 * 21 20 19 39 39 H 1.07999 * 120.00836 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99945 * 359.97053 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 7 4.0445 2.8275 -0.2462 8 6 5.5079 2.8685 -0.3686 9 1 5.8492 2.0042 -0.9383 10 6 6.1278 2.8414 1.0048 11 1 5.6182 3.3052 1.8365 12 6 7.3454 2.2247 1.1995 13 7 7.9724 1.6717 0.1842 14 14 8.1011 2.1676 2.9068 15 1 9.3990 1.4482 2.8500 16 1 8.3236 3.5520 3.3962 17 1 7.1816 1.4575 3.8317 18 6 5.9174 4.1325 -1.0797 19 6 5.3648 5.3441 -0.7089 20 6 5.7436 6.5041 -1.3583 21 6 6.6683 6.4513 -2.3846 22 6 7.2169 5.2390 -2.7589 23 6 6.8412 4.0795 -2.1065 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0699 1.5875 2.1491 30 1 1.9990 3.1541 1.3075 31 1 0.5490 2.1252 1.3969 32 1 3.8571 0.8801 -1.0114 33 1 4.0030 0.9836 0.7596 34 1 3.6032 3.2970 -1.0226 35 1 7.5803 1.7021 -0.7025 36 1 4.6393 5.3848 0.0901 37 1 5.3152 7.4514 -1.0657 38 1 6.9623 7.3573 -2.8937 39 1 7.9390 5.1975 -3.5609 40 1 7.2699 3.1323 -2.3989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = -1.200935 kcal Electronic energy + Delta-G solvation = -18049.437824 eV Core-core repulsion = 15441.820311 eV Total energy + Delta-G solvation = -2607.617513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.62386 -37.03454 -34.78318 -32.30455 -30.53552 -30.10286 -28.87597 -26.25514 -25.01378 -23.12935 -22.10929 -21.39629 -20.23281 -19.51877 -16.80839 -16.07823 -15.15842 -14.76026 -14.54146 -14.27772 -13.92608 -13.74702 -13.44868 -12.92102 -12.71200 -12.51445 -12.24651 -11.86461 -11.70898 -11.60939 -11.48910 -11.18342 -10.82887 -10.68082 -10.42398 -10.31650 -10.24046 -10.16026 -9.94026 -9.88906 -9.04277 -8.47274 -8.15380 -7.75610 -7.32109 -6.36447 -4.08439 2.17422 2.21189 3.43395 3.44938 3.63179 4.48674 4.59703 4.93872 5.15203 5.25485 5.32205 5.46629 5.57908 5.58790 5.66272 5.76192 5.80542 5.84827 6.01414 6.08852 6.12155 6.18187 6.27530 6.33534 6.35939 6.42523 6.47274 6.50732 6.69828 6.80739 6.83804 6.91051 6.95713 7.21071 7.26451 7.56411 7.78590 7.97648 8.03392 8.45137 8.61458 8.86306 9.60766 10.97231 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.007977 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.892913 B = 3509.290054 C = 4812.781995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.059 0.941 5 C -0.134 4.134 6 C 0.075 3.925 7 N -0.676 5.676 8 C 0.229 3.771 9 H 0.017 0.983 10 C -0.562 4.562 11 H 0.059 0.941 12 C 0.019 3.981 13 N -0.908 5.908 14 Si 1.068 2.932 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.287 1.287 18 C -0.042 4.042 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.125 4.125 23 C -0.124 4.124 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.312 0.688 35 H 0.268 0.732 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 1.870 -2.736 9.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.107 4.107 4 H 0.078 0.922 5 C -0.191 4.191 6 C -0.054 4.054 7 N -0.305 5.305 8 C 0.122 3.878 9 H 0.035 0.965 10 C -0.600 4.600 11 H 0.077 0.923 12 C -0.186 4.186 13 N -0.544 5.544 14 Si 0.896 3.104 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.214 1.214 18 C -0.044 4.044 19 C -0.123 4.123 20 C -0.149 4.149 21 C -0.169 4.169 22 C -0.144 4.144 23 C -0.143 4.143 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.056 1.411 -1.190 8.265 hybrid contribution -0.969 0.296 -1.792 2.058 sum -9.026 1.707 -2.981 9.658 Atomic orbital electron populations 1.21798 0.96305 1.00941 1.01690 1.21553 0.95381 0.97060 1.01813 1.21161 0.95905 0.95071 0.98536 0.92235 1.21710 0.98943 1.01869 0.96617 1.21842 0.92857 0.90550 1.00177 1.60708 1.07809 1.14711 1.47275 1.18440 0.83911 0.89527 0.95953 0.96532 1.21804 1.06298 1.38857 0.93050 0.92303 1.25869 0.94541 0.93144 1.05064 1.70838 1.40064 1.42349 1.01143 0.83550 0.76190 0.76488 0.74157 1.20874 1.21383 1.21374 1.20764 0.94519 0.97574 0.91521 1.20945 1.00358 0.91684 0.99316 1.21032 0.98764 0.97842 0.97257 1.20844 0.99678 0.97057 0.99351 1.20957 1.00128 0.93032 1.00240 1.21038 0.98754 0.97885 0.96634 0.93130 0.93315 0.92514 0.92501 0.91968 0.93143 0.91464 0.94114 0.97101 0.90605 0.87212 0.92033 0.86119 0.87369 0.87529 0.87403 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.12 -1.58 5.40 -26.73 -0.14 -1.73 16 3 C -0.09 -1.33 2.53 -90.62 -0.23 -1.55 16 4 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.13 -2.00 8.84 37.15 0.33 -1.67 16 6 C 0.08 1.43 4.87 -3.83 -0.02 1.41 16 7 N -0.68 -13.90 5.31 -109.19 -0.58 -14.48 16 8 C 0.23 5.51 2.07 -70.01 -0.14 5.37 16 9 H 0.02 0.45 5.87 -51.93 -0.30 0.14 16 10 C -0.56 -15.22 8.30 -34.44 -0.29 -15.51 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 13 N -0.91 -26.55 13.63 55.43 0.76 -25.79 16 14 Si 1.07 25.15 29.90 -169.99 -5.08 20.06 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.04 -0.96 4.64 -104.62 -0.49 -1.44 16 19 C -0.10 -2.16 9.09 -39.58 -0.36 -2.52 16 20 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 21 C -0.15 -2.65 10.05 -39.59 -0.40 -3.05 16 22 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 23 C -0.12 -2.69 9.56 -39.58 -0.38 -3.07 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 31 H 0.04 0.52 6.56 -51.93 -0.34 0.18 16 32 H 0.01 0.21 8.06 -51.93 -0.42 -0.21 16 33 H 0.08 1.63 8.00 -51.93 -0.42 1.22 16 34 H 0.31 5.96 8.16 -39.29 -0.32 5.64 16 35 H 0.27 7.74 5.85 -40.82 -0.24 7.50 16 36 H 0.12 2.47 7.92 -52.49 -0.42 2.05 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.11 2.45 7.41 -52.49 -0.39 2.06 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -28.59 323.69 -9.28 -37.87 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.60 Total: 7.62 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -2.65 Total: -30.16 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.18 Total: -40.27 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.59 -9.28 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.666 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds