Wall clock time and date at job start Mon Mar 30 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47111 * 304.99511 * 3 2 1 5 5 C 1.52995 * 109.47323 * 65.00225 * 3 2 1 6 6 C 1.52999 * 109.46932 * 185.00122 * 3 2 1 7 7 N 1.46898 * 109.47203 * 174.99857 * 6 3 2 8 8 C 1.46899 * 111.00202 * 179.97438 * 7 6 3 9 9 H 1.08994 * 109.47521 * 35.00262 * 8 7 6 10 10 C 1.50706 * 109.47239 * 275.00219 * 8 7 6 11 11 H 1.08000 * 119.99617 * 327.52506 * 10 8 7 12 12 C 1.37876 * 119.99692 * 147.52965 * 10 8 7 13 13 N 1.31512 * 120.00585 * 0.68508 * 12 10 8 14 14 Si 1.86802 * 119.99673 * 180.96303 * 12 10 8 15 15 H 1.48499 * 109.47312 * 179.72151 * 14 12 10 16 16 H 1.48504 * 109.47115 * 299.72114 * 14 12 10 17 17 H 1.48502 * 109.47207 * 59.71834 * 14 12 10 18 18 C 1.50703 * 109.47321 * 155.00296 * 8 7 6 19 19 C 1.38240 * 119.99732 * 46.42798 * 18 8 7 20 20 C 1.38236 * 119.99627 * 179.79314 * 19 18 8 21 21 C 1.38234 * 120.00045 * 0.43685 * 20 19 18 22 22 C 1.38229 * 120.00272 * 359.81787 * 21 20 19 23 23 C 1.38229 * 120.00152 * 226.70739 * 18 8 7 24 24 H 1.08998 * 109.47346 * 59.99881 * 1 2 3 25 25 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47115 * 300.00146 * 1 2 3 27 27 H 1.09003 * 109.47168 * 240.00533 * 2 1 3 28 28 H 1.08998 * 109.47346 * 120.00119 * 2 1 3 29 29 H 1.09000 * 109.47106 * 59.99487 * 5 3 2 30 30 H 1.08997 * 109.47351 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.46940 * 300.00397 * 5 3 2 32 32 H 1.09005 * 109.47578 * 55.00335 * 6 3 2 33 33 H 1.09001 * 109.47496 * 294.99961 * 6 3 2 34 34 H 1.00901 * 111.00047 * 303.95456 * 7 6 3 35 35 H 0.96996 * 119.99430 * 0.33730 * 13 12 10 36 36 H 1.07999 * 119.99982 * 359.97438 * 19 18 8 37 37 H 1.08002 * 119.99835 * 180.27794 * 20 19 18 38 38 H 1.08006 * 119.99867 * 179.83752 * 21 20 19 39 39 H 1.07999 * 120.00836 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99945 * 359.97053 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 7 4.0445 2.8275 -0.2462 8 6 5.5079 2.8685 -0.3686 9 1 5.8492 2.0042 -0.9383 10 6 6.1278 2.8414 1.0048 11 1 5.6182 3.3052 1.8365 12 6 7.3454 2.2247 1.1995 13 7 7.9724 1.6717 0.1842 14 14 8.1011 2.1676 2.9068 15 1 9.3990 1.4482 2.8500 16 1 8.3236 3.5520 3.3962 17 1 7.1816 1.4575 3.8317 18 6 5.9174 4.1325 -1.0797 19 6 5.3648 5.3441 -0.7089 20 6 5.7436 6.5041 -1.3583 21 6 6.6683 6.4513 -2.3846 22 6 7.2169 5.2390 -2.7589 23 6 6.8412 4.0795 -2.1065 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0699 1.5875 2.1491 30 1 1.9990 3.1541 1.3075 31 1 0.5490 2.1252 1.3969 32 1 3.8571 0.8801 -1.0114 33 1 4.0030 0.9836 0.7596 34 1 3.6032 3.2970 -1.0226 35 1 7.5803 1.7021 -0.7025 36 1 4.6393 5.3848 0.0901 37 1 5.3152 7.4514 -1.0657 38 1 6.9623 7.3573 -2.8937 39 1 7.9390 5.1975 -3.5609 40 1 7.2699 3.1323 -2.3989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:42 Heat of formation + Delta-G solvation = -16.337571 kcal Electronic energy + Delta-G solvation = -18050.094198 eV Core-core repulsion = 15441.820311 eV Total energy + Delta-G solvation = -2608.273886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23479 -38.43930 -36.41382 -34.17725 -32.05055 -31.64375 -30.15096 -27.95611 -26.64136 -24.79478 -23.58433 -22.87870 -21.95817 -20.82252 -18.79043 -17.64751 -16.73302 -16.26953 -15.97279 -15.77614 -15.61592 -15.33251 -14.88927 -14.50405 -14.20320 -14.08114 -13.69432 -13.30436 -13.21721 -13.02445 -12.80486 -12.67311 -12.53565 -12.22804 -12.00836 -11.91558 -11.69213 -11.49421 -11.44340 -11.31960 -10.98107 -10.55468 -9.69951 -9.39484 -9.16622 -8.52450 -6.28125 0.61570 0.66129 1.49941 1.57581 1.76222 2.54343 2.99946 3.24057 3.47395 3.92638 4.04715 4.11914 4.21243 4.23053 4.33031 4.40774 4.42811 4.63287 4.67868 4.73436 4.80589 4.86787 4.89121 4.93995 4.98306 5.12571 5.20067 5.21432 5.25186 5.30430 5.33939 5.54351 5.60681 5.68714 5.70722 5.92185 5.96549 6.06740 6.28341 6.49006 6.58204 6.89874 7.48824 8.78111 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.007977 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.892913 B = 3509.290054 C = 4812.781995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.078 4.078 4 H 0.071 0.929 5 C -0.129 4.129 6 C 0.079 3.921 7 N -0.670 5.670 8 C 0.236 3.764 9 H -0.019 1.019 10 C -0.567 4.567 11 H 0.045 0.955 12 C -0.030 4.030 13 N -0.935 5.935 14 Si 1.109 2.891 15 H -0.285 1.285 16 H -0.274 1.274 17 H -0.273 1.273 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.148 4.148 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.000 1.000 33 H 0.043 0.957 34 H 0.323 0.677 35 H 0.257 0.743 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 3.886 -2.948 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.097 4.097 4 H 0.089 0.911 5 C -0.186 4.186 6 C -0.051 4.051 7 N -0.299 5.299 8 C 0.127 3.873 9 H -0.002 1.002 10 C -0.605 4.605 11 H 0.064 0.936 12 C -0.229 4.229 13 N -0.574 5.574 14 Si 0.931 3.069 15 H -0.211 1.211 16 H -0.200 1.200 17 H -0.198 1.198 18 C -0.071 4.071 19 C -0.135 4.135 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.144 4.144 23 C -0.167 4.167 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.314 3.438 -1.409 10.028 hybrid contribution -0.635 -0.263 -1.816 1.942 sum -9.950 3.174 -3.226 10.931 Atomic orbital electron populations 1.21755 0.93952 1.02138 1.02313 1.21537 0.97350 0.95314 1.01475 1.21100 0.92501 0.96866 0.99220 0.91068 1.21655 1.00668 1.00437 0.95826 1.21838 0.95796 0.89330 0.98095 1.60602 1.06071 1.15692 1.47556 1.18200 0.85389 0.89407 0.94287 1.00188 1.21995 1.06192 1.38188 0.94156 0.93646 1.27107 0.95403 0.92824 1.07540 1.70926 1.40772 1.44462 1.01196 0.83030 0.75627 0.77244 0.70955 1.21075 1.19969 1.19794 1.20615 0.96061 0.97393 0.92982 1.20989 1.00697 0.91983 0.99824 1.21438 0.98094 0.98212 0.96372 1.21340 0.98006 0.97916 0.98439 1.21289 1.00274 0.92483 1.00311 1.21053 0.99446 0.98483 0.97734 0.92357 0.91931 0.91972 0.92674 0.92640 0.94334 0.93128 0.91222 0.98159 0.93823 0.86047 0.93173 0.86575 0.83660 0.83216 0.84702 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.67 71.98 0.70 -2.15 16 2 C -0.12 -3.04 5.40 30.59 0.17 -2.88 16 3 C -0.08 -2.34 2.53 -10.80 -0.03 -2.36 16 4 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.13 -3.75 8.84 71.98 0.64 -3.11 16 6 C 0.08 3.15 4.87 86.30 0.42 3.57 16 7 N -0.67 -28.66 5.31 -499.35 -2.65 -31.31 16 8 C 0.24 11.93 2.07 43.43 0.09 12.02 16 9 H -0.02 -1.11 5.87 -2.39 -0.01 -1.13 16 10 C -0.57 -31.99 8.30 25.60 0.21 -31.78 16 11 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 12 C -0.03 -1.73 5.46 84.65 0.46 -1.27 16 13 N -0.94 -57.26 13.63 21.45 0.29 -56.96 16 14 Si 1.11 51.64 29.90 68.60 2.05 53.69 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 C -0.07 -3.21 4.64 -19.87 -0.09 -3.30 16 19 C -0.12 -4.72 9.09 22.27 0.20 -4.52 16 20 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 21 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 22 C -0.13 -4.49 10.05 22.27 0.22 -4.26 16 23 C -0.15 -6.56 9.56 22.27 0.21 -6.34 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.16 6.56 -2.39 -0.02 1.15 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.63 7.75 -2.39 -0.02 1.61 16 31 H 0.07 1.62 6.56 -2.39 -0.02 1.61 16 32 H 0.00 0.01 8.06 -2.38 -0.02 -0.01 16 33 H 0.04 2.00 8.00 -2.39 -0.02 1.98 16 34 H 0.32 12.63 8.16 -89.69 -0.73 11.90 16 35 H 0.26 15.87 5.85 -92.71 -0.54 15.33 16 36 H 0.12 4.72 7.92 -2.91 -0.02 4.70 16 37 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.09 4.24 7.41 -2.91 -0.02 4.21 16 Total: -1.00 -64.72 323.69 3.83 -60.88 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.49 Total: 28.04 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.65 Total: -54.34 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.36 Total: -88.28 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -64.72 3.83 -60.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.546 kcal (2) G-P(sol) polarization free energy of solvation -64.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds