Wall clock time and date at job start Mon Mar 30 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46753 * 2 1 4 4 H 1.08996 * 109.47457 * 54.99423 * 3 2 1 5 5 C 1.53002 * 109.46944 * 294.99482 * 3 2 1 6 6 C 1.53000 * 109.47275 * 175.00250 * 3 2 1 7 7 N 1.46902 * 109.47365 * 184.99930 * 6 3 2 8 8 C 1.46895 * 110.99855 * 179.97438 * 7 6 3 9 9 H 1.08995 * 109.47570 * 34.99944 * 8 7 6 10 10 C 1.50704 * 109.47089 * 274.99350 * 8 7 6 11 11 H 1.07999 * 120.00398 * 324.77448 * 10 8 7 12 12 C 1.37883 * 119.99834 * 144.76718 * 10 8 7 13 13 N 1.31515 * 119.99858 * 5.10755 * 12 10 8 14 14 Si 1.86795 * 119.99790 * 185.10948 * 12 10 8 15 15 H 1.48502 * 109.46913 * 90.00418 * 14 12 10 16 16 H 1.48498 * 109.46855 * 210.00010 * 14 12 10 17 17 H 1.48493 * 109.47464 * 330.00264 * 14 12 10 18 18 C 1.50704 * 109.46980 * 154.99892 * 8 7 6 19 19 C 1.38236 * 119.99769 * 45.39520 * 18 8 7 20 20 C 1.38237 * 119.99626 * 179.79209 * 19 18 8 21 21 C 1.38242 * 119.99918 * 0.43433 * 20 19 18 22 22 C 1.38225 * 120.00109 * 359.81875 * 21 20 19 23 23 C 1.38229 * 119.99826 * 225.66930 * 18 8 7 24 24 H 1.09002 * 109.46946 * 60.00823 * 1 2 3 25 25 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47308 * 300.00367 * 1 2 3 27 27 H 1.08993 * 109.47758 * 239.99921 * 2 1 3 28 28 H 1.09002 * 109.46946 * 119.99177 * 2 1 3 29 29 H 1.09001 * 109.47092 * 60.00430 * 5 3 2 30 30 H 1.09000 * 109.47566 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47518 * 300.00248 * 5 3 2 32 32 H 1.09005 * 109.46918 * 304.99671 * 6 3 2 33 33 H 1.08993 * 109.47267 * 64.99205 * 6 3 2 34 34 H 1.00900 * 110.99556 * 303.95278 * 7 6 3 35 35 H 0.97000 * 120.00085 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.00358 * 359.97438 * 19 18 8 37 37 H 1.08004 * 120.00080 * 180.27813 * 20 19 18 38 38 H 1.07994 * 119.99602 * 179.83633 * 21 20 19 39 39 H 1.07999 * 120.00118 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00629 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 7 4.0444 2.8278 0.2460 8 6 5.5076 2.8687 0.3695 9 1 5.9455 2.0730 -0.2331 10 6 5.8955 2.6771 1.8131 11 1 5.2754 3.0851 2.5977 12 6 7.0419 1.9807 2.1324 13 7 7.8492 1.5706 1.1786 14 14 7.4482 1.6197 3.9195 15 1 6.8471 0.3194 4.3109 16 1 8.9221 1.5545 4.0886 17 1 6.8985 2.6981 4.7798 18 6 6.0155 4.2026 -0.1142 19 6 5.3850 5.3672 0.2822 20 6 5.8535 6.5910 -0.1581 21 6 6.9469 6.6495 -1.0020 22 6 7.5741 5.4847 -1.4025 23 6 7.1082 4.2611 -0.9588 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.5489 2.1252 -1.3970 30 1 1.9980 3.1543 -1.3073 31 1 2.0698 1.5875 -2.1492 32 1 3.8570 0.8803 1.0113 33 1 4.0029 0.9837 -0.7596 34 1 3.7311 3.3881 -0.5323 35 1 8.6559 1.0811 1.4032 36 1 4.5283 5.3212 0.9381 37 1 5.3637 7.5012 0.1551 38 1 7.3113 7.6055 -1.3480 39 1 8.4281 5.5304 -2.0620 40 1 7.5983 3.3510 -1.2717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:45 Heat of formation + Delta-G solvation = 0.738875 kcal Electronic energy + Delta-G solvation = -17995.838130 eV Core-core repulsion = 15388.304734 eV Total energy + Delta-G solvation = -2607.533396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.45409 -37.01843 -34.53132 -32.19776 -30.54924 -29.96398 -28.80059 -26.42767 -25.44881 -23.06879 -21.91848 -21.29370 -19.85293 -19.40474 -16.54255 -15.89848 -15.08381 -14.94492 -14.65839 -14.09622 -13.94634 -13.68053 -13.06406 -12.90707 -12.75250 -12.49768 -12.01993 -11.88961 -11.79210 -11.68254 -11.47862 -10.98974 -10.87206 -10.81455 -10.46148 -10.27494 -10.18346 -10.17703 -9.82983 -9.61018 -9.50587 -8.52164 -8.01873 -7.66764 -7.24053 -6.05143 -4.08135 2.31598 2.34166 3.29660 3.36170 3.40578 4.39618 4.72735 5.02321 5.18842 5.25836 5.30174 5.57763 5.58506 5.68033 5.75502 5.78505 5.79864 5.88621 6.03263 6.14276 6.20351 6.26273 6.32184 6.34426 6.40648 6.46991 6.56927 6.59160 6.81222 6.84954 6.92913 7.01502 7.28680 7.34551 7.41835 7.74712 7.86245 7.93828 8.18955 8.24133 8.73936 9.04345 9.55256 10.99941 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.008211 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.063548 B = 3409.087038 C = 4918.364120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.075 0.925 5 C -0.147 4.147 6 C 0.077 3.923 7 N -0.685 5.685 8 C 0.235 3.765 9 H 0.040 0.960 10 C -0.484 4.484 11 H 0.063 0.937 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.273 1.273 18 C -0.035 4.035 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.153 4.153 22 C -0.131 4.131 23 C -0.110 4.110 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.313 0.687 35 H 0.261 0.739 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 1.698 -4.831 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.093 0.907 5 C -0.204 4.204 6 C -0.052 4.052 7 N -0.316 5.316 8 C 0.128 3.872 9 H 0.057 0.943 10 C -0.523 4.523 11 H 0.081 0.919 12 C -0.142 4.142 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.037 4.037 19 C -0.130 4.130 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.149 4.149 23 C -0.129 4.129 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.197 1.614 -4.172 9.338 hybrid contribution 0.848 -0.396 0.131 0.945 sum -7.348 1.218 -4.041 8.474 Atomic orbital electron populations 1.21804 0.96415 1.00895 1.01655 1.21537 0.95266 0.97072 1.01838 1.21208 0.96545 0.95169 0.98085 0.90668 1.21881 1.00422 1.00763 0.97383 1.21796 0.92141 0.91415 0.99896 1.60803 1.14191 1.09741 1.46836 1.18398 0.82317 0.89521 0.96995 0.94262 1.21015 1.07096 1.33252 0.90901 0.91861 1.25031 0.96215 0.95475 0.97462 1.69926 1.12613 1.38206 1.31932 0.86536 0.77287 0.78748 0.85128 1.20659 1.21367 1.19763 1.20703 0.94336 0.97275 0.91366 1.20992 1.00499 0.91666 0.99800 1.20993 0.97563 0.97362 0.99339 1.20815 0.97993 0.97295 1.01016 1.20983 0.99761 0.93079 1.01118 1.21104 0.96966 0.97171 0.97677 0.92790 0.93377 0.92891 0.92446 0.91964 0.93155 0.92463 0.93401 0.90784 0.96855 0.87013 0.92884 0.86263 0.87619 0.87800 0.87633 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 37.16 0.36 -1.31 16 2 C -0.12 -1.57 5.40 -26.73 -0.14 -1.72 16 3 C -0.09 -1.37 2.60 -90.62 -0.24 -1.61 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 5 C -0.15 -1.98 8.72 37.16 0.32 -1.65 16 6 C 0.08 1.47 4.94 -3.82 -0.02 1.45 16 7 N -0.69 -14.19 5.82 -109.19 -0.64 -14.82 16 8 C 0.23 5.68 2.29 -70.02 -0.16 5.52 16 9 H 0.04 1.06 6.83 -51.93 -0.35 0.71 16 10 C -0.48 -13.03 8.31 -34.44 -0.29 -13.32 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 13 N -0.89 -24.94 12.84 55.43 0.71 -24.23 16 14 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.04 -0.81 4.65 -104.62 -0.49 -1.29 16 19 C -0.11 -2.31 9.08 -39.58 -0.36 -2.66 16 20 C -0.13 -2.47 10.05 -39.58 -0.40 -2.86 16 21 C -0.15 -2.73 10.05 -39.58 -0.40 -3.12 16 22 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 23 C -0.11 -2.43 9.67 -39.58 -0.38 -2.81 16 24 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 30 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.57 8.00 -51.93 -0.42 1.16 16 33 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 34 H 0.31 5.99 6.39 -39.29 -0.25 5.74 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.12 2.44 7.89 -52.49 -0.41 2.03 16 37 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 2.71 8.00 -52.49 -0.42 2.29 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -27.60 324.55 -9.39 -36.98 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.65 Total: 7.54 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -2.68 Total: -26.74 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.08 Total: -39.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.60 -9.39 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.722 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds