Wall clock time and date at job start Mon Mar 30 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46753 * 2 1 4 4 H 1.08996 * 109.47457 * 54.99423 * 3 2 1 5 5 C 1.53002 * 109.46944 * 294.99482 * 3 2 1 6 6 C 1.53000 * 109.47275 * 175.00250 * 3 2 1 7 7 N 1.46902 * 109.47365 * 184.99930 * 6 3 2 8 8 C 1.46895 * 110.99855 * 179.97438 * 7 6 3 9 9 H 1.08995 * 109.47570 * 34.99944 * 8 7 6 10 10 C 1.50704 * 109.47089 * 274.99350 * 8 7 6 11 11 H 1.07999 * 120.00398 * 324.77448 * 10 8 7 12 12 C 1.37883 * 119.99834 * 144.76718 * 10 8 7 13 13 N 1.31515 * 119.99858 * 5.10755 * 12 10 8 14 14 Si 1.86795 * 119.99790 * 185.10948 * 12 10 8 15 15 H 1.48502 * 109.46913 * 90.00418 * 14 12 10 16 16 H 1.48498 * 109.46855 * 210.00010 * 14 12 10 17 17 H 1.48493 * 109.47464 * 330.00264 * 14 12 10 18 18 C 1.50704 * 109.46980 * 154.99892 * 8 7 6 19 19 C 1.38236 * 119.99769 * 45.39520 * 18 8 7 20 20 C 1.38237 * 119.99626 * 179.79209 * 19 18 8 21 21 C 1.38242 * 119.99918 * 0.43433 * 20 19 18 22 22 C 1.38225 * 120.00109 * 359.81875 * 21 20 19 23 23 C 1.38229 * 119.99826 * 225.66930 * 18 8 7 24 24 H 1.09002 * 109.46946 * 60.00823 * 1 2 3 25 25 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47308 * 300.00367 * 1 2 3 27 27 H 1.08993 * 109.47758 * 239.99921 * 2 1 3 28 28 H 1.09002 * 109.46946 * 119.99177 * 2 1 3 29 29 H 1.09001 * 109.47092 * 60.00430 * 5 3 2 30 30 H 1.09000 * 109.47566 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47518 * 300.00248 * 5 3 2 32 32 H 1.09005 * 109.46918 * 304.99671 * 6 3 2 33 33 H 1.08993 * 109.47267 * 64.99205 * 6 3 2 34 34 H 1.00900 * 110.99556 * 303.95278 * 7 6 3 35 35 H 0.97000 * 120.00085 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.00358 * 359.97438 * 19 18 8 37 37 H 1.08004 * 120.00080 * 180.27813 * 20 19 18 38 38 H 1.07994 * 119.99602 * 179.83633 * 21 20 19 39 39 H 1.07999 * 120.00118 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00629 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 7 4.0444 2.8278 0.2460 8 6 5.5076 2.8687 0.3695 9 1 5.9455 2.0730 -0.2331 10 6 5.8955 2.6771 1.8131 11 1 5.2754 3.0851 2.5977 12 6 7.0419 1.9807 2.1324 13 7 7.8492 1.5706 1.1786 14 14 7.4482 1.6197 3.9195 15 1 6.8471 0.3194 4.3109 16 1 8.9221 1.5545 4.0886 17 1 6.8985 2.6981 4.7798 18 6 6.0155 4.2026 -0.1142 19 6 5.3850 5.3672 0.2822 20 6 5.8535 6.5910 -0.1581 21 6 6.9469 6.6495 -1.0020 22 6 7.5741 5.4847 -1.4025 23 6 7.1082 4.2611 -0.9588 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.5489 2.1252 -1.3970 30 1 1.9980 3.1543 -1.3073 31 1 2.0698 1.5875 -2.1492 32 1 3.8570 0.8803 1.0113 33 1 4.0029 0.9837 -0.7596 34 1 3.7311 3.3881 -0.5323 35 1 8.6559 1.0811 1.4032 36 1 4.5283 5.3212 0.9381 37 1 5.3637 7.5012 0.1551 38 1 7.3113 7.6055 -1.3480 39 1 8.4281 5.5304 -2.0620 40 1 7.5983 3.3510 -1.2717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:45 Heat of formation + Delta-G solvation = -13.589337 kcal Electronic energy + Delta-G solvation = -17996.459448 eV Core-core repulsion = 15388.304734 eV Total energy + Delta-G solvation = -2608.154714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06659 -38.39928 -36.14476 -34.10201 -32.04682 -31.52133 -30.07203 -28.18447 -26.95982 -24.66026 -23.41654 -22.77392 -21.59052 -20.68418 -18.49802 -17.54896 -16.75621 -16.51249 -16.03623 -15.81507 -15.38778 -15.10307 -14.55151 -14.38875 -14.15524 -14.00552 -13.66296 -13.52003 -13.22674 -12.91240 -12.83028 -12.70904 -12.56226 -12.22391 -12.03305 -11.87082 -11.57480 -11.48651 -11.39263 -11.32352 -11.22991 -10.56492 -9.58155 -9.31065 -9.04411 -8.11362 -6.22280 0.73940 0.77470 1.37802 1.38359 1.48637 2.39697 3.05665 3.25770 3.61007 4.03466 4.13111 4.19469 4.29106 4.32124 4.43258 4.48522 4.59151 4.67777 4.73299 4.79602 4.89682 4.94744 5.00761 5.08240 5.14022 5.19589 5.22814 5.25504 5.30359 5.39867 5.46036 5.58266 5.60539 5.71578 5.79896 5.83163 6.09468 6.17762 6.37061 6.47219 6.92217 7.02768 7.44278 8.91345 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.008211 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.063548 B = 3409.087038 C = 4918.364120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.142 4.142 6 C 0.081 3.919 7 N -0.680 5.680 8 C 0.243 3.757 9 H -0.002 1.002 10 C -0.496 4.496 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.917 5.917 14 Si 0.952 3.048 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.062 4.062 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.135 4.135 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.002 0.998 34 H 0.324 0.676 35 H 0.260 0.740 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 3.625 -5.084 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.101 4.101 4 H 0.089 0.911 5 C -0.199 4.199 6 C -0.049 4.049 7 N -0.311 5.311 8 C 0.135 3.865 9 H 0.016 0.984 10 C -0.534 4.534 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.556 5.556 14 Si 0.778 3.222 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.063 4.063 19 C -0.140 4.140 20 C -0.145 4.145 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.154 4.154 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.142 0.858 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.290 3.545 -4.429 10.886 hybrid contribution 1.170 -0.931 0.143 1.502 sum -8.120 2.614 -4.286 9.547 Atomic orbital electron populations 1.21759 0.94116 1.02051 1.02259 1.21523 0.97204 0.95430 1.01461 1.21120 0.93021 0.96853 0.99062 0.91139 1.21836 1.02033 0.99983 0.96068 1.21788 0.95232 0.90056 0.97830 1.60707 1.12251 1.10819 1.47338 1.18105 0.83770 0.89585 0.95021 0.98380 1.21195 1.06936 1.33278 0.92014 0.93144 1.25723 0.96250 0.95585 1.01039 1.70053 1.12945 1.39103 1.33481 0.85644 0.77050 0.78656 0.80860 1.20103 1.21019 1.19433 1.20585 0.95470 0.97076 0.93192 1.21031 1.00663 0.92103 1.00227 1.21395 0.97359 0.97521 0.98187 1.21293 0.96851 0.98414 0.99428 1.21287 1.00371 0.92308 1.00882 1.21055 0.97456 0.97780 0.99104 0.91710 0.92023 0.92709 0.92304 0.93010 0.90627 0.93100 0.93351 0.93858 0.98003 0.85832 0.93056 0.86567 0.83930 0.83559 0.85014 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.67 71.98 0.70 -2.21 16 2 C -0.12 -3.06 5.40 30.60 0.17 -2.90 16 3 C -0.08 -2.46 2.60 -10.79 -0.03 -2.49 16 4 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 5 C -0.14 -3.64 8.72 71.98 0.63 -3.01 16 6 C 0.08 3.23 4.94 86.30 0.43 3.65 16 7 N -0.68 -29.36 5.82 -499.36 -2.91 -32.27 16 8 C 0.24 12.40 2.29 43.43 0.10 12.50 16 9 H 0.00 -0.10 6.83 -2.39 -0.02 -0.11 16 10 C -0.50 -27.81 8.31 25.60 0.21 -27.60 16 11 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 12 C 0.01 0.76 5.45 84.66 0.46 1.22 16 13 N -0.92 -53.75 12.84 21.45 0.28 -53.47 16 14 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 18 C -0.06 -2.90 4.65 -19.87 -0.09 -2.99 16 19 C -0.12 -4.97 9.08 22.27 0.20 -4.76 16 20 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 21 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 22 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 23 C -0.14 -6.09 9.67 22.27 0.22 -5.87 16 24 H 0.06 1.17 6.57 -2.39 -0.02 1.15 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.57 6.57 -2.39 -0.02 1.56 16 30 H 0.05 1.36 6.68 -2.39 -0.02 1.34 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.97 8.00 -2.38 -0.02 1.95 16 33 H 0.00 0.07 8.06 -2.39 -0.02 0.06 16 34 H 0.32 12.73 6.39 -89.69 -0.57 12.16 16 35 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.12 4.72 7.89 -2.91 -0.02 4.70 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.09 4.51 8.00 -2.91 -0.02 4.49 16 Total: -1.00 -62.16 324.55 3.47 -58.69 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.42 Total: 27.34 kcal Atomic # 6 Polarization: -50.94 SS G_CDS: 3.66 Total: -47.29 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.63 Total: -85.74 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.16 3.47 -58.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.102 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds