Wall clock time and date at job start Mon Mar 30 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46772 * 2 1 4 4 C 1.53003 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.46896 * 110.99877 * 66.04358 * 5 4 3 7 7 C 1.46902 * 110.99694 * 189.99927 * 5 4 3 8 8 H 1.08995 * 109.46909 * 299.99866 * 7 5 4 9 9 C 1.50702 * 109.47111 * 59.99832 * 7 5 4 10 10 H 1.08004 * 119.99635 * 35.14358 * 9 7 5 11 11 C 1.37871 * 120.00332 * 215.13462 * 9 7 5 12 12 N 1.31518 * 119.99820 * 6.48539 * 11 9 7 13 13 Si 1.86795 * 120.00262 * 186.48603 * 11 9 7 14 14 H 1.48497 * 109.47211 * 90.00373 * 13 11 9 15 15 H 1.48505 * 109.46959 * 209.99989 * 13 11 9 16 16 H 1.48500 * 109.47347 * 330.00032 * 13 11 9 17 17 C 1.50700 * 109.46840 * 179.97438 * 7 5 4 18 18 C 1.38232 * 120.00270 * 313.82353 * 17 7 5 19 19 C 1.38228 * 120.00179 * 179.80933 * 18 17 7 20 20 C 1.38231 * 120.00163 * 0.39525 * 19 18 17 21 21 C 1.38239 * 119.99932 * 359.85800 * 20 19 18 22 22 C 1.38236 * 119.99782 * 134.08882 * 17 7 5 23 23 H 1.09002 * 109.46756 * 300.00053 * 1 2 3 24 24 H 1.08998 * 109.47243 * 59.99803 * 1 2 3 25 25 H 1.08997 * 109.46815 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47172 * 240.00313 * 2 1 3 27 27 H 1.08998 * 109.46994 * 119.99706 * 2 1 3 28 28 H 1.09002 * 109.47122 * 60.00058 * 3 2 1 29 29 H 1.08998 * 109.47397 * 300.00102 * 3 2 1 30 30 H 1.09002 * 109.46605 * 59.99754 * 4 3 2 31 31 H 1.09008 * 109.46842 * 300.00327 * 4 3 2 32 32 H 1.09000 * 109.46733 * 183.95088 * 6 5 4 33 33 H 1.08998 * 109.47829 * 303.95724 * 6 5 4 34 34 H 1.09004 * 109.46790 * 63.95934 * 6 5 4 35 35 H 0.96992 * 120.00221 * 179.97438 * 12 11 9 36 36 H 1.08004 * 119.99852 * 359.97438 * 18 17 7 37 37 H 1.08008 * 120.00220 * 180.22401 * 19 18 17 38 38 H 1.07999 * 120.00459 * 179.83041 * 20 19 18 39 39 H 1.08003 * 120.00385 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99757 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.7106 3.5088 1.2538 7 6 5.5084 2.8739 -0.2387 8 1 6.0238 2.3207 0.5463 9 6 5.8171 2.2528 -1.5766 10 1 5.1289 2.3742 -2.4001 11 6 6.9782 1.5297 -1.7496 12 7 7.7531 1.2735 -0.7183 13 14 7.4508 0.9139 -3.4486 14 1 8.2805 1.9378 -4.1331 15 1 8.2258 -0.3464 -3.3205 16 1 6.2219 0.6607 -4.2429 17 6 5.9731 4.3075 -0.2317 18 6 5.2678 5.2662 -0.9348 19 6 5.6917 6.5818 -0.9251 20 6 6.8257 6.9373 -0.2191 21 6 7.5341 5.9777 0.4797 22 6 7.1078 4.6627 0.4733 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9329 0.9289 -0.8909 31 1 3.9338 0.9286 0.8892 32 1 4.0228 4.5517 1.1997 33 1 2.6325 3.4596 1.4062 34 1 4.2178 3.0204 2.0859 35 1 8.5697 0.7645 -0.8398 36 1 4.3839 4.9877 -1.4895 37 1 5.1386 7.3315 -1.4715 38 1 7.1586 7.9647 -0.2138 39 1 8.4203 6.2554 1.0310 40 1 7.6610 3.9130 1.0194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:14 Heat of formation + Delta-G solvation = 11.034397 kcal Electronic energy + Delta-G solvation = -18250.338720 eV Core-core repulsion = 15643.251771 eV Total energy + Delta-G solvation = -2607.086949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.61445 -36.74099 -34.34123 -32.56168 -30.57924 -29.95661 -28.12530 -27.21402 -24.46948 -23.24115 -21.70271 -21.29784 -20.13711 -19.34043 -16.54837 -15.84994 -15.30711 -14.88281 -14.40995 -14.20498 -13.81449 -13.59315 -13.39804 -12.88917 -12.51407 -12.25791 -12.17814 -12.01742 -11.75693 -11.50166 -11.10811 -10.99875 -10.85910 -10.72812 -10.58551 -10.49716 -10.18121 -10.06099 -9.81700 -9.65663 -9.33212 -8.58296 -8.01023 -7.63809 -7.16151 -6.11760 -4.14317 2.32305 2.35420 3.27403 3.34094 3.37120 4.34835 4.69919 5.00774 5.22233 5.28511 5.45721 5.48102 5.68363 5.78806 5.80033 5.88169 6.02945 6.06644 6.12737 6.18890 6.23721 6.26560 6.37292 6.42130 6.47901 6.54429 6.57923 6.63357 6.84319 6.92328 6.95078 7.10926 7.32426 7.35874 7.45667 7.77922 7.79288 7.87157 8.09190 8.23008 8.55787 8.98473 9.48937 10.94381 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.008802 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.672237 B = 3180.394545 C = 4566.006268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.069 3.931 5 N -0.538 5.538 6 C 0.022 3.978 7 C 0.230 3.770 8 H 0.042 0.958 9 C -0.495 4.495 10 H 0.065 0.935 11 C 0.066 3.934 12 N -0.887 5.887 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.272 1.272 17 C -0.023 4.023 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.119 4.119 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 2.911 2.593 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.059 4.059 5 N -0.262 5.262 6 C -0.127 4.127 7 C 0.125 3.875 8 H 0.060 0.940 9 C -0.533 4.533 10 H 0.083 0.917 11 C -0.137 4.137 12 N -0.524 5.524 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.196 1.196 17 C -0.024 4.024 18 C -0.121 4.121 19 C -0.154 4.154 20 C -0.172 4.172 21 C -0.149 4.149 22 C -0.137 4.137 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.335 3.050 2.262 8.259 hybrid contribution 0.973 -0.683 -0.252 1.216 sum -6.361 2.367 2.009 7.079 Atomic orbital electron populations 1.21760 0.96504 1.00886 1.01475 1.21495 0.95071 0.97771 1.01880 1.21651 0.96623 0.95403 1.01597 1.21882 0.92661 0.90063 1.01295 1.62110 1.17586 1.15096 1.31378 1.22372 0.99404 0.99435 0.91454 1.18522 0.82471 0.88228 0.98304 0.94029 1.20930 1.05288 1.31204 0.95919 0.91728 1.24994 0.96568 0.95291 0.96878 1.69910 1.13745 1.39355 1.29380 0.86550 0.78762 0.78098 0.84410 1.20528 1.21274 1.19638 1.20506 0.93376 0.96617 0.91877 1.20977 1.00192 0.91910 0.99061 1.21006 0.97328 0.96501 1.00559 1.20807 0.97236 0.98329 1.00801 1.20957 0.99539 0.93771 1.00630 1.21086 0.97268 0.95215 1.00174 0.93157 0.92901 0.93327 0.91958 0.92516 0.92972 0.91747 0.89351 0.96563 0.92166 0.92930 0.97148 0.92719 0.86222 0.87645 0.87819 0.87655 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.83 5.15 -26.73 -0.14 -1.96 16 4 C 0.07 1.37 4.80 -3.82 -0.02 1.35 16 5 N -0.54 -11.36 4.15 -237.69 -0.99 -12.34 16 6 C 0.02 0.41 8.98 60.06 0.54 0.95 16 7 C 0.23 5.58 1.83 -70.01 -0.13 5.46 16 8 H 0.04 1.14 7.03 -51.93 -0.36 0.78 16 9 C -0.50 -13.04 6.86 -34.44 -0.24 -13.27 16 10 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 11 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 12 N -0.89 -24.63 12.77 55.43 0.71 -23.92 16 13 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C -0.02 -0.51 3.57 -104.62 -0.37 -0.89 16 18 C -0.10 -2.15 8.41 -39.59 -0.33 -2.48 16 19 C -0.14 -2.50 10.05 -39.59 -0.40 -2.90 16 20 C -0.15 -2.74 10.05 -39.58 -0.40 -3.13 16 21 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 22 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.79 6.47 -51.93 -0.34 0.46 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.95 6.77 -51.93 -0.35 1.60 16 31 H 0.02 0.33 8.12 -51.92 -0.42 -0.09 16 32 H 0.06 1.14 6.39 -51.93 -0.33 0.81 16 33 H 0.05 0.86 6.30 -51.93 -0.33 0.54 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 36 H 0.12 2.50 7.91 -52.48 -0.42 2.09 16 37 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.12 2.64 8.00 -52.49 -0.42 2.22 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -27.16 322.76 -9.33 -36.49 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.74 Total: 3.20 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.15 Total: -24.30 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.28 Total: -36.27 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.16 -9.33 -36.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.525 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds