Wall clock time and date at job start Mon Mar 30 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46772 * 2 1 4 4 C 1.53003 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.46896 * 110.99877 * 66.04358 * 5 4 3 7 7 C 1.46902 * 110.99694 * 189.99927 * 5 4 3 8 8 H 1.08995 * 109.46909 * 299.99866 * 7 5 4 9 9 C 1.50702 * 109.47111 * 59.99832 * 7 5 4 10 10 H 1.08004 * 119.99635 * 35.14358 * 9 7 5 11 11 C 1.37871 * 120.00332 * 215.13462 * 9 7 5 12 12 N 1.31518 * 119.99820 * 6.48539 * 11 9 7 13 13 Si 1.86795 * 120.00262 * 186.48603 * 11 9 7 14 14 H 1.48497 * 109.47211 * 90.00373 * 13 11 9 15 15 H 1.48505 * 109.46959 * 209.99989 * 13 11 9 16 16 H 1.48500 * 109.47347 * 330.00032 * 13 11 9 17 17 C 1.50700 * 109.46840 * 179.97438 * 7 5 4 18 18 C 1.38232 * 120.00270 * 313.82353 * 17 7 5 19 19 C 1.38228 * 120.00179 * 179.80933 * 18 17 7 20 20 C 1.38231 * 120.00163 * 0.39525 * 19 18 17 21 21 C 1.38239 * 119.99932 * 359.85800 * 20 19 18 22 22 C 1.38236 * 119.99782 * 134.08882 * 17 7 5 23 23 H 1.09002 * 109.46756 * 300.00053 * 1 2 3 24 24 H 1.08998 * 109.47243 * 59.99803 * 1 2 3 25 25 H 1.08997 * 109.46815 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47172 * 240.00313 * 2 1 3 27 27 H 1.08998 * 109.46994 * 119.99706 * 2 1 3 28 28 H 1.09002 * 109.47122 * 60.00058 * 3 2 1 29 29 H 1.08998 * 109.47397 * 300.00102 * 3 2 1 30 30 H 1.09002 * 109.46605 * 59.99754 * 4 3 2 31 31 H 1.09008 * 109.46842 * 300.00327 * 4 3 2 32 32 H 1.09000 * 109.46733 * 183.95088 * 6 5 4 33 33 H 1.08998 * 109.47829 * 303.95724 * 6 5 4 34 34 H 1.09004 * 109.46790 * 63.95934 * 6 5 4 35 35 H 0.96992 * 120.00221 * 179.97438 * 12 11 9 36 36 H 1.08004 * 119.99852 * 359.97438 * 18 17 7 37 37 H 1.08008 * 120.00220 * 180.22401 * 19 18 17 38 38 H 1.07999 * 120.00459 * 179.83041 * 20 19 18 39 39 H 1.08003 * 120.00385 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99757 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.7106 3.5088 1.2538 7 6 5.5084 2.8739 -0.2387 8 1 6.0238 2.3207 0.5463 9 6 5.8171 2.2528 -1.5766 10 1 5.1289 2.3742 -2.4001 11 6 6.9782 1.5297 -1.7496 12 7 7.7531 1.2735 -0.7183 13 14 7.4508 0.9139 -3.4486 14 1 8.2805 1.9378 -4.1331 15 1 8.2258 -0.3464 -3.3205 16 1 6.2219 0.6607 -4.2429 17 6 5.9731 4.3075 -0.2317 18 6 5.2678 5.2662 -0.9348 19 6 5.6917 6.5818 -0.9251 20 6 6.8257 6.9373 -0.2191 21 6 7.5341 5.9777 0.4797 22 6 7.1078 4.6627 0.4733 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9329 0.9289 -0.8909 31 1 3.9338 0.9286 0.8892 32 1 4.0228 4.5517 1.1997 33 1 2.6325 3.4596 1.4062 34 1 4.2178 3.0204 2.0859 35 1 8.5697 0.7645 -0.8398 36 1 4.3839 4.9877 -1.4895 37 1 5.1386 7.3315 -1.4715 38 1 7.1586 7.9647 -0.2138 39 1 8.4203 6.2554 1.0310 40 1 7.6610 3.9130 1.0194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:14 Heat of formation + Delta-G solvation = -2.568336 kcal Electronic energy + Delta-G solvation = -18250.928579 eV Core-core repulsion = 15643.251771 eV Total energy + Delta-G solvation = -2607.676807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24684 -38.31091 -35.74568 -34.43749 -32.17789 -31.51531 -29.49317 -29.02738 -26.15295 -24.88696 -23.24258 -22.65987 -21.55669 -21.07400 -18.53375 -17.43247 -16.93739 -16.44662 -15.95156 -15.89922 -15.48634 -15.02099 -14.88162 -14.26905 -14.02949 -13.88761 -13.63672 -13.57746 -13.21308 -13.07215 -12.89754 -12.65132 -12.52476 -12.11773 -12.02909 -11.93288 -11.77589 -11.58287 -11.52133 -11.17714 -11.14239 -10.62640 -9.57466 -9.27979 -8.93582 -8.15346 -6.24638 0.74388 0.79162 1.37993 1.39445 1.48864 2.38287 3.02841 3.25682 3.44231 4.09675 4.21610 4.27714 4.32159 4.34378 4.43136 4.50566 4.54715 4.61381 4.72282 4.84217 4.88280 4.92365 4.96991 5.01706 5.07948 5.08276 5.22865 5.28728 5.34615 5.41196 5.48121 5.52143 5.56208 5.68997 5.80498 5.84586 6.09069 6.12796 6.36680 6.46123 6.76816 6.93963 7.41555 8.89499 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.008802 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.672237 B = 3180.394545 C = 4566.006268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.101 4.101 4 C 0.072 3.928 5 N -0.539 5.539 6 C 0.028 3.972 7 C 0.239 3.761 8 H -0.004 1.004 9 C -0.500 4.500 10 H 0.055 0.945 11 C 0.018 3.982 12 N -0.918 5.918 13 Si 0.951 3.049 14 H -0.279 1.279 15 H -0.283 1.283 16 H -0.265 1.265 17 C -0.046 4.046 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.144 4.144 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.000 1.000 32 H 0.059 0.941 33 H 0.081 0.919 34 H -0.001 1.001 35 H 0.262 0.738 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 4.876 1.985 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.056 4.056 5 N -0.262 5.262 6 C -0.120 4.120 7 C 0.132 3.868 8 H 0.014 0.986 9 C -0.538 4.538 10 H 0.073 0.927 11 C -0.181 4.181 12 N -0.557 5.557 13 Si 0.777 3.223 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.189 1.189 17 C -0.048 4.048 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.163 4.163 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.584 5.018 1.654 10.080 hybrid contribution 1.341 -1.214 -0.006 1.809 sum -7.243 3.803 1.648 8.346 Atomic orbital electron populations 1.21710 0.94151 1.02084 1.02106 1.21485 0.97060 0.96031 1.01546 1.21543 0.93105 0.97188 1.02085 1.21881 0.95566 0.89133 0.99058 1.62121 1.15609 1.15737 1.32768 1.22368 1.00955 0.98816 0.89854 1.18252 0.83721 0.89051 0.95792 0.98592 1.21091 1.05036 1.31240 0.96480 0.92715 1.25689 0.96688 0.95789 0.99974 1.70044 1.14137 1.40469 1.31036 0.85656 0.78528 0.77557 0.80587 1.20455 1.20908 1.18891 1.20372 0.94447 0.96105 0.93830 1.20986 1.00168 0.92944 0.99201 1.21396 0.97423 0.95876 0.99853 1.21277 0.96120 0.99920 0.98750 1.21261 1.00390 0.92530 1.00543 1.21048 0.97546 0.96441 1.01257 0.92262 0.92521 0.91914 0.92735 0.92564 0.91677 0.91804 0.92266 0.98166 0.92240 0.90056 0.98196 0.92930 0.86766 0.84021 0.83596 0.85017 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.91 71.99 0.71 -2.27 16 2 C -0.12 -3.30 5.93 30.60 0.18 -3.12 16 3 C -0.10 -3.17 5.15 30.60 0.16 -3.01 16 4 C 0.07 2.96 4.80 86.30 0.41 3.38 16 5 N -0.54 -23.45 4.15 -905.91 -3.76 -27.21 16 6 C 0.03 1.07 8.98 127.69 1.15 2.22 16 7 C 0.24 12.15 1.83 43.42 0.08 12.23 16 8 H 0.00 -0.22 7.03 -2.39 -0.02 -0.24 16 9 C -0.50 -27.44 6.86 25.60 0.18 -27.27 16 10 H 0.05 3.04 7.82 -2.91 -0.02 3.02 16 11 C 0.02 1.02 5.45 84.65 0.46 1.49 16 12 N -0.92 -53.54 12.77 21.45 0.27 -53.26 16 13 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.05 -2.16 3.57 -19.87 -0.07 -2.23 16 18 C -0.11 -4.69 8.41 22.27 0.19 -4.51 16 19 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 20 C -0.14 -4.54 10.05 22.27 0.22 -4.31 16 21 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 22 C -0.14 -6.48 9.67 22.27 0.22 -6.26 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.87 6.47 -2.39 -0.02 1.85 16 29 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.76 6.77 -2.39 -0.02 2.74 16 31 H 0.00 0.00 8.12 -2.38 -0.02 -0.02 16 32 H 0.06 2.24 6.39 -2.39 -0.02 2.22 16 33 H 0.08 2.56 6.30 -2.39 -0.02 2.54 16 34 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.11 4.72 7.91 -2.91 -0.02 4.70 16 37 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.09 4.38 8.00 -2.91 -0.02 4.36 16 Total: -1.00 -61.37 322.76 3.85 -57.51 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.98 Total: 18.94 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.33 Total: -42.20 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.48 Total: -80.47 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.37 3.85 -57.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.945 kcal (2) G-P(sol) polarization free energy of solvation -61.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds