Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47419 * 2 1 4 4 C 1.52997 * 109.46894 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.46801 * 180.02562 * 4 3 2 6 6 C 1.46906 * 111.00214 * 293.95172 * 5 4 3 7 7 C 1.46906 * 111.00266 * 170.00366 * 5 4 3 8 8 H 1.08999 * 109.47005 * 59.99427 * 7 5 4 9 9 C 1.50701 * 109.46628 * 300.00006 * 7 5 4 10 10 H 1.08001 * 119.99978 * 303.27495 * 9 7 5 11 11 C 1.37883 * 120.00193 * 123.27677 * 9 7 5 12 12 N 1.31509 * 120.00255 * 185.34301 * 11 9 7 13 13 Si 1.86799 * 119.99678 * 5.33847 * 11 9 7 14 14 H 1.48502 * 109.47484 * 275.23247 * 13 11 9 15 15 H 1.48506 * 109.47206 * 35.23207 * 13 11 9 16 16 H 1.48500 * 109.47061 * 155.23094 * 13 11 9 17 17 C 1.50697 * 109.47238 * 180.02562 * 7 5 4 18 18 C 1.38227 * 120.00302 * 46.32341 * 17 7 5 19 19 C 1.38237 * 119.99981 * 179.78955 * 18 17 7 20 20 C 1.38233 * 119.99927 * 0.44033 * 19 18 17 21 21 C 1.38233 * 119.99964 * 359.81409 * 20 19 18 22 22 C 1.38230 * 120.00011 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.46971 * 59.99787 * 1 2 3 24 24 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47001 * 300.00054 * 1 2 3 26 26 H 1.09009 * 109.47129 * 239.99973 * 2 1 3 27 27 H 1.08996 * 109.47430 * 120.00794 * 2 1 3 28 28 H 1.08995 * 109.47078 * 59.99993 * 3 2 1 29 29 H 1.09000 * 109.46728 * 300.00248 * 3 2 1 30 30 H 1.09003 * 109.47185 * 60.00410 * 4 3 2 31 31 H 1.08991 * 109.47733 * 299.99866 * 4 3 2 32 32 H 1.08999 * 109.47030 * 296.04833 * 6 5 4 33 33 H 1.09005 * 109.46945 * 56.04973 * 6 5 4 34 34 H 1.09002 * 109.47425 * 176.04342 * 6 5 4 35 35 H 0.96997 * 120.00352 * 179.97438 * 12 11 9 36 36 H 1.08000 * 119.99979 * 359.97438 * 18 17 7 37 37 H 1.08003 * 120.00172 * 180.27146 * 19 18 17 38 38 H 1.08004 * 120.00230 * 179.83553 * 20 19 18 39 39 H 1.08001 * 119.99703 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00029 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8273 0.0000 6 6 3.7098 3.5101 -1.2528 7 6 5.5087 2.8733 0.2375 8 1 6.0235 2.3209 -0.5487 9 6 5.8186 2.2506 1.5744 10 1 5.3516 2.6337 2.4697 11 6 6.6983 1.1919 1.6545 12 7 6.8888 0.5808 2.8033 13 14 7.6193 0.6255 0.1313 14 1 6.7693 -0.3174 -0.6392 15 1 7.9468 1.8012 -0.7149 16 1 8.8740 -0.0574 0.5368 17 6 5.9735 4.3069 0.2318 18 6 5.2706 5.2641 0.9390 19 6 5.6994 6.5783 0.9373 20 6 6.8260 6.9368 0.2209 21 6 7.5258 5.9804 -0.4907 22 6 7.0995 4.6655 -0.4854 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9338 0.9285 0.8890 32 1 4.2162 3.0227 -2.0859 33 1 2.6314 3.4612 -1.4043 34 1 4.0220 4.5530 -1.1978 35 1 7.5074 -0.1642 2.8597 36 1 4.3881 4.9848 1.4954 37 1 5.1528 7.3255 1.4935 38 1 7.1595 7.9640 0.2173 39 1 8.4062 6.2604 -1.0501 40 1 7.6461 3.9183 -1.0417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 14.310367 kcal Electronic energy + Delta-G solvation = -18335.150055 eV Core-core repulsion = 15728.205163 eV Total energy + Delta-G solvation = -2606.944892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.85510 -36.88646 -34.39398 -32.52932 -30.94404 -30.16679 -28.19109 -27.66421 -24.53571 -23.11749 -21.93529 -21.41442 -20.20956 -19.28095 -17.04655 -16.11020 -15.33547 -14.99777 -14.62506 -14.32949 -13.79112 -13.56637 -13.50261 -12.84005 -12.77619 -12.72898 -12.30134 -12.18449 -11.91708 -11.78563 -11.24668 -11.07653 -10.93304 -10.76975 -10.57819 -10.50286 -10.27612 -9.95899 -9.86085 -9.78124 -9.48678 -8.68967 -8.20938 -7.82279 -7.29463 -6.20883 -4.18565 2.10829 2.15742 3.17796 3.26463 3.27598 4.28346 4.49206 4.82117 5.16003 5.29132 5.43333 5.45749 5.53260 5.60222 5.71038 5.77508 5.94358 5.98192 6.06270 6.08727 6.12511 6.17831 6.22886 6.29841 6.32086 6.38062 6.48752 6.55728 6.58196 6.72801 6.80628 6.86499 7.03728 7.15661 7.24133 7.41483 7.52165 7.77002 8.05100 8.13023 8.54069 8.91548 9.41298 10.91094 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.008832 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.232331 B = 3169.526713 C = 4285.657728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.112 4.112 4 C 0.062 3.938 5 N -0.531 5.531 6 C 0.018 3.982 7 C 0.211 3.789 8 H 0.013 0.987 9 C -0.489 4.489 10 H 0.084 0.916 11 C 0.077 3.923 12 N -0.886 5.886 13 Si 0.867 3.133 14 H -0.275 1.275 15 H -0.265 1.265 16 H -0.286 1.286 17 C -0.028 4.028 18 C -0.095 4.095 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.125 4.125 22 C -0.136 4.136 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.012 0.988 31 H 0.097 0.903 32 H 0.008 0.992 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.266 0.734 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 4.636 -7.243 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.066 4.066 5 N -0.255 5.255 6 C -0.131 4.131 7 C 0.106 3.894 8 H 0.031 0.969 9 C -0.527 4.527 10 H 0.102 0.898 11 C -0.127 4.127 12 N -0.523 5.523 13 Si 0.694 3.306 14 H -0.201 1.201 15 H -0.190 1.190 16 H -0.212 1.212 17 C -0.030 4.030 18 C -0.113 4.113 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.143 4.143 22 C -0.155 4.155 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.115 0.885 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.076 4.719 -6.752 10.236 hybrid contribution 1.160 -0.809 -1.425 2.008 sum -4.917 3.910 -8.177 10.311 Atomic orbital electron populations 1.21750 0.96412 1.00929 1.01478 1.21504 0.95164 0.97705 1.01957 1.21609 0.96151 0.95557 1.01691 1.21971 0.93376 0.89861 1.01400 1.62256 1.16447 1.15387 1.31420 1.22432 0.99851 0.99476 0.91295 1.18788 0.84308 0.89105 0.97241 0.96914 1.20772 1.25605 1.14328 0.92011 0.89822 1.25054 0.96251 0.95707 0.95687 1.69874 1.35855 1.21909 1.24653 0.87040 0.80214 0.79229 0.84104 1.20088 1.18975 1.21201 1.20313 0.93616 0.96266 0.92758 1.20984 1.00056 0.91780 0.98511 1.21074 0.97148 0.96528 0.99965 1.20865 0.97135 0.98526 1.00152 1.20917 0.99576 0.93472 1.00375 1.21058 0.97801 0.95730 1.00871 0.93216 0.93296 0.92797 0.92661 0.91719 0.91430 0.93031 0.96972 0.88502 0.97320 0.92519 0.91998 0.92361 0.85701 0.87189 0.87423 0.87347 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.39 16 2 C -0.13 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.11 -1.81 5.15 -26.73 -0.14 -1.95 16 4 C 0.06 1.23 4.80 -3.83 -0.02 1.21 16 5 N -0.53 -10.98 4.15 -237.69 -0.99 -11.97 16 6 C 0.02 0.32 8.98 60.07 0.54 0.86 16 7 C 0.21 4.90 1.62 -70.01 -0.11 4.79 16 8 H 0.01 0.32 4.58 -51.93 -0.24 0.08 16 9 C -0.49 -13.13 7.41 -34.44 -0.26 -13.39 16 10 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 11 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 12 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 13 Si 0.87 20.96 26.95 -169.99 -4.58 16.38 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.26 -6.17 5.89 56.52 0.33 -5.84 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 C -0.03 -0.61 3.57 -104.63 -0.37 -0.99 16 18 C -0.09 -1.89 8.42 -39.59 -0.33 -2.22 16 19 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 20 C -0.15 -2.44 10.05 -39.59 -0.40 -2.84 16 21 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 22 C -0.14 -2.75 9.67 -39.58 -0.38 -3.13 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.77 6.47 -51.93 -0.34 0.44 16 30 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.10 2.22 6.76 -51.93 -0.35 1.87 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 34 H 0.06 1.10 6.40 -51.93 -0.33 0.77 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 2.53 7.91 -52.49 -0.42 2.11 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.11 2.22 7.10 -52.49 -0.37 1.84 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -28.11 317.41 -8.81 -36.93 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.65 Total: 3.23 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -2.15 Total: -24.16 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.21 Total: -37.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.58 Total: 16.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.11 -8.81 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.237 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds