Wall clock time and date at job start Mon Mar 30 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47419 * 2 1 4 4 C 1.52997 * 109.46894 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.46801 * 180.02562 * 4 3 2 6 6 C 1.46906 * 111.00214 * 293.95172 * 5 4 3 7 7 C 1.46906 * 111.00266 * 170.00366 * 5 4 3 8 8 H 1.08999 * 109.47005 * 59.99427 * 7 5 4 9 9 C 1.50701 * 109.46628 * 300.00006 * 7 5 4 10 10 H 1.08001 * 119.99978 * 303.27495 * 9 7 5 11 11 C 1.37883 * 120.00193 * 123.27677 * 9 7 5 12 12 N 1.31509 * 120.00255 * 185.34301 * 11 9 7 13 13 Si 1.86799 * 119.99678 * 5.33847 * 11 9 7 14 14 H 1.48502 * 109.47484 * 275.23247 * 13 11 9 15 15 H 1.48506 * 109.47206 * 35.23207 * 13 11 9 16 16 H 1.48500 * 109.47061 * 155.23094 * 13 11 9 17 17 C 1.50697 * 109.47238 * 180.02562 * 7 5 4 18 18 C 1.38227 * 120.00302 * 46.32341 * 17 7 5 19 19 C 1.38237 * 119.99981 * 179.78955 * 18 17 7 20 20 C 1.38233 * 119.99927 * 0.44033 * 19 18 17 21 21 C 1.38233 * 119.99964 * 359.81409 * 20 19 18 22 22 C 1.38230 * 120.00011 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.46971 * 59.99787 * 1 2 3 24 24 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47001 * 300.00054 * 1 2 3 26 26 H 1.09009 * 109.47129 * 239.99973 * 2 1 3 27 27 H 1.08996 * 109.47430 * 120.00794 * 2 1 3 28 28 H 1.08995 * 109.47078 * 59.99993 * 3 2 1 29 29 H 1.09000 * 109.46728 * 300.00248 * 3 2 1 30 30 H 1.09003 * 109.47185 * 60.00410 * 4 3 2 31 31 H 1.08991 * 109.47733 * 299.99866 * 4 3 2 32 32 H 1.08999 * 109.47030 * 296.04833 * 6 5 4 33 33 H 1.09005 * 109.46945 * 56.04973 * 6 5 4 34 34 H 1.09002 * 109.47425 * 176.04342 * 6 5 4 35 35 H 0.96997 * 120.00352 * 179.97438 * 12 11 9 36 36 H 1.08000 * 119.99979 * 359.97438 * 18 17 7 37 37 H 1.08003 * 120.00172 * 180.27146 * 19 18 17 38 38 H 1.08004 * 120.00230 * 179.83553 * 20 19 18 39 39 H 1.08001 * 119.99703 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00029 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8273 0.0000 6 6 3.7098 3.5101 -1.2528 7 6 5.5087 2.8733 0.2375 8 1 6.0235 2.3209 -0.5487 9 6 5.8186 2.2506 1.5744 10 1 5.3516 2.6337 2.4697 11 6 6.6983 1.1919 1.6545 12 7 6.8888 0.5808 2.8033 13 14 7.6193 0.6255 0.1313 14 1 6.7693 -0.3174 -0.6392 15 1 7.9468 1.8012 -0.7149 16 1 8.8740 -0.0574 0.5368 17 6 5.9735 4.3069 0.2318 18 6 5.2706 5.2641 0.9390 19 6 5.6994 6.5783 0.9373 20 6 6.8260 6.9368 0.2209 21 6 7.5258 5.9804 -0.4907 22 6 7.0995 4.6655 -0.4854 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9338 0.9285 0.8890 32 1 4.2162 3.0227 -2.0859 33 1 2.6314 3.4612 -1.4043 34 1 4.0220 4.5530 -1.1978 35 1 7.5074 -0.1642 2.8597 36 1 4.3881 4.9848 1.4954 37 1 5.1528 7.3255 1.4935 38 1 7.1595 7.9640 0.2173 39 1 8.4062 6.2604 -1.0501 40 1 7.6461 3.9183 -1.0417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:16 Heat of formation + Delta-G solvation = -1.224223 kcal Electronic energy + Delta-G solvation = -18335.823686 eV Core-core repulsion = 15728.205163 eV Total energy + Delta-G solvation = -2607.618522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39343 -38.40849 -35.77581 -34.49958 -32.47933 -31.60102 -29.55507 -29.40802 -26.11635 -24.77803 -23.38363 -22.73126 -21.60525 -20.96429 -19.11177 -17.55995 -16.94069 -16.57446 -16.04949 -15.98479 -15.34427 -14.99484 -14.96022 -14.73586 -14.18383 -14.09167 -13.77582 -13.62040 -13.41637 -13.13294 -12.92458 -12.69614 -12.47744 -12.09252 -12.08054 -11.85764 -11.82284 -11.65066 -11.53601 -11.37713 -11.22764 -10.75952 -9.64914 -9.34647 -8.97031 -8.35096 -6.35664 0.65374 0.70904 1.22922 1.25742 1.34019 2.24475 2.86155 3.16001 3.36949 4.06048 4.12900 4.20569 4.25878 4.30302 4.34989 4.43731 4.47277 4.51812 4.58156 4.76436 4.80487 4.83047 4.88229 4.93982 4.98070 5.06284 5.07943 5.22834 5.26917 5.31396 5.37816 5.47165 5.48930 5.53515 5.73309 5.77426 5.98744 6.12476 6.30421 6.44371 6.64521 6.74860 7.27671 8.81168 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.008832 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.232331 B = 3169.526713 C = 4285.657728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.101 4.101 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.024 3.976 7 C 0.218 3.782 8 H 0.002 0.998 9 C -0.482 4.482 10 H 0.037 0.963 11 C 0.025 3.975 12 N -0.936 5.936 13 Si 0.921 3.079 14 H -0.269 1.269 15 H -0.250 1.250 16 H -0.283 1.283 17 C -0.057 4.057 18 C -0.111 4.111 19 C -0.125 4.125 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.155 4.155 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.055 0.945 32 H 0.010 0.990 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 6.698 -9.480 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.064 4.064 5 N -0.263 5.263 6 C -0.124 4.124 7 C 0.111 3.889 8 H 0.020 0.980 9 C -0.521 4.521 10 H 0.056 0.944 11 C -0.174 4.174 12 N -0.575 5.575 13 Si 0.746 3.254 14 H -0.194 1.194 15 H -0.174 1.174 16 H -0.209 1.209 17 C -0.058 4.058 18 C -0.129 4.129 19 C -0.143 4.143 20 C -0.155 4.155 21 C -0.139 4.139 22 C -0.174 4.174 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.410 6.798 -9.007 12.978 hybrid contribution 1.203 -1.309 -0.696 1.909 sum -5.207 5.489 -9.702 12.304 Atomic orbital electron populations 1.21702 0.94031 1.02107 1.02151 1.21499 0.97211 0.96132 1.01450 1.21521 0.93030 0.97134 1.02172 1.21939 0.96057 0.89194 0.99180 1.62137 1.14832 1.15853 1.33515 1.22440 1.01369 0.99015 0.89587 1.18590 0.85617 0.90267 0.94398 0.98048 1.20819 1.24647 1.14163 0.92439 0.94425 1.25744 0.97312 0.95965 0.98366 1.70009 1.37459 1.23116 1.26933 0.86143 0.78988 0.79298 0.80928 1.19400 1.17399 1.20929 1.20203 0.95078 0.95476 0.95026 1.20957 1.00008 0.93125 0.98856 1.21417 0.97525 0.95719 0.99631 1.21347 0.95829 1.00273 0.98079 1.21294 1.00361 0.92238 1.00047 1.21159 0.97550 0.97271 1.01394 0.91906 0.91932 0.92744 0.92183 0.93332 0.92218 0.91039 0.97224 0.92647 0.97192 0.90016 0.91859 0.92389 0.87271 0.84184 0.83329 0.84114 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.91 71.98 0.71 -2.38 16 2 C -0.12 -3.48 5.93 30.59 0.18 -3.30 16 3 C -0.10 -3.20 5.15 30.59 0.16 -3.04 16 4 C 0.06 2.63 4.80 86.30 0.41 3.04 16 5 N -0.54 -22.67 4.15 -905.90 -3.76 -26.43 16 6 C 0.02 0.83 8.98 127.69 1.15 1.97 16 7 C 0.22 10.36 1.62 43.42 0.07 10.43 16 8 H 0.00 0.10 4.58 -2.39 -0.01 0.09 16 9 C -0.48 -27.35 7.41 25.60 0.19 -27.16 16 10 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 11 C 0.03 1.45 5.47 84.66 0.46 1.92 16 12 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 13 Si 0.92 44.34 26.95 68.60 1.85 46.19 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.25 -11.31 5.89 99.48 0.59 -10.72 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 17 C -0.06 -2.45 3.57 -19.87 -0.07 -2.52 16 18 C -0.11 -4.38 8.42 22.27 0.19 -4.19 16 19 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 20 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 21 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 22 C -0.16 -6.06 9.67 22.27 0.22 -5.85 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.99 6.47 -2.39 -0.02 1.98 16 30 H 0.01 0.39 8.12 -2.39 -0.02 0.37 16 31 H 0.05 2.71 6.76 -2.39 -0.02 2.69 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 2.38 6.30 -2.38 -0.02 2.36 16 34 H 0.06 2.17 6.40 -2.39 -0.02 2.15 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.11 4.54 7.91 -2.91 -0.02 4.52 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.10 4.06 7.10 -2.91 -0.02 4.04 16 Total: -1.00 -64.42 317.41 3.59 -60.83 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.86 Total: 18.95 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 4.34 Total: -42.10 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.46 Total: -83.87 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.85 Total: 46.19 kcal Total: -64.42 3.59 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.604 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds