Wall clock time and date at job start Mon Mar 30 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46916 * 2 1 4 4 N 1.46903 * 109.46652 * 183.53059 * 3 2 1 5 5 C 1.46900 * 111.00142 * 295.52102 * 4 3 2 6 6 C 1.53001 * 109.47545 * 299.80079 * 5 4 3 7 7 C 1.46910 * 110.99584 * 171.57107 * 4 3 2 8 8 H 1.09003 * 109.46834 * 57.17206 * 7 4 3 9 9 C 1.50703 * 109.47079 * 177.16423 * 7 4 3 10 10 H 1.08002 * 119.99883 * 34.86385 * 9 7 4 11 11 C 1.37872 * 120.00195 * 214.86405 * 9 7 4 12 12 N 1.31517 * 119.99652 * 354.71677 * 11 9 7 13 13 Si 1.86797 * 120.00082 * 174.71571 * 11 9 7 14 14 H 1.48504 * 109.46858 * 60.00069 * 13 11 9 15 15 H 1.48502 * 109.47412 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47495 * 300.00233 * 13 11 9 17 17 C 1.50697 * 109.47048 * 297.16688 * 7 4 3 18 18 C 1.38238 * 119.99765 * 132.01383 * 17 7 4 19 19 C 1.38227 * 120.00069 * 179.97438 * 18 17 7 20 20 C 1.38238 * 119.99915 * 359.95696 * 19 18 17 21 21 C 1.38240 * 119.99914 * 359.97438 * 20 19 18 22 22 C 1.38229 * 120.00001 * 311.99148 * 17 7 4 23 23 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47231 * 299.99770 * 1 2 3 25 25 H 1.08994 * 109.47404 * 60.00099 * 1 2 3 26 26 H 1.09000 * 109.47496 * 240.00232 * 2 1 3 27 27 H 1.09003 * 109.47525 * 120.00186 * 2 1 3 28 28 H 1.08993 * 109.47301 * 63.52956 * 3 2 1 29 29 H 1.09000 * 109.47115 * 303.52498 * 3 2 1 30 30 H 1.09006 * 109.46918 * 59.79996 * 5 4 3 31 31 H 1.09004 * 109.47100 * 179.79753 * 5 4 3 32 32 H 1.08996 * 109.46953 * 65.09553 * 6 5 4 33 33 H 1.08988 * 109.47161 * 185.10156 * 6 5 4 34 34 H 1.09010 * 109.46786 * 305.10149 * 6 5 4 35 35 H 0.97003 * 119.99302 * 180.02562 * 12 11 9 36 36 H 1.07999 * 120.00150 * 359.97438 * 18 17 7 37 37 H 1.07994 * 120.00457 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.00051 * 179.71912 * 20 19 18 39 39 H 1.07997 * 119.99528 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00334 * 0.02562 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5065 1.4434 -0.0853 5 6 4.1035 0.8275 1.1073 6 6 3.6882 1.6161 2.3508 7 6 4.0212 2.8042 -0.2887 8 1 3.6773 3.4475 0.5213 9 6 5.5278 2.7748 -0.3015 10 1 6.0478 1.9281 -0.7247 11 6 6.2425 3.8287 0.2272 12 7 5.6135 4.9044 0.6477 13 14 8.1040 3.7286 0.3461 14 1 8.6779 3.5513 -1.0120 15 1 8.6298 4.9814 0.9455 16 1 8.4842 2.5738 1.1987 17 6 3.5180 3.3402 -1.6042 18 6 2.9631 4.6047 -1.6685 19 6 2.5020 5.0966 -2.8752 20 6 2.5966 4.3243 -4.0178 21 6 3.1528 3.0604 -3.9538 22 6 3.6117 2.5676 -2.7465 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.7292 1.9378 0.9199 29 1 1.6259 1.9743 -0.8567 30 1 3.7563 -0.2019 1.1971 31 1 5.1897 0.8379 1.0164 32 1 2.6109 1.5302 2.4925 33 1 4.2026 1.2151 3.2240 34 1 3.9551 2.6651 2.2218 35 1 6.1164 5.6460 1.0193 36 1 2.8898 5.2083 -0.7759 37 1 2.0681 6.0842 -2.9254 38 1 2.2322 4.7068 -4.9599 39 1 3.2262 2.4569 -4.8464 40 1 4.0451 1.5797 -2.6963 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:34 Heat of formation + Delta-G solvation = 16.285143 kcal Electronic energy + Delta-G solvation = -18770.974758 eV Core-core repulsion = 16164.115499 eV Total energy + Delta-G solvation = -2606.859259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.70070 -37.02574 -33.57518 -32.18722 -30.91126 -29.90864 -28.41408 -26.87079 -24.43092 -23.47830 -21.66428 -21.47450 -20.21468 -18.71230 -16.42329 -15.83163 -15.41899 -14.76155 -14.62160 -14.04313 -13.83871 -13.41326 -13.25895 -12.65861 -12.48623 -12.32387 -11.92018 -11.81785 -11.58648 -11.39550 -11.34083 -11.02983 -10.93921 -10.69956 -10.51772 -10.30673 -10.12043 -10.08381 -9.83938 -9.46555 -9.29751 -8.56869 -7.95722 -7.58011 -7.09483 -6.11447 -4.13695 2.38176 2.41089 3.28324 3.32832 3.35833 4.34886 4.75159 5.07940 5.25437 5.39901 5.50016 5.71022 5.72685 5.83844 5.91143 5.95294 6.05100 6.15434 6.18970 6.20862 6.29503 6.35798 6.41094 6.52587 6.54886 6.62187 6.69492 6.77957 6.92451 6.96048 7.08418 7.15844 7.38421 7.41446 7.51935 7.78397 7.84319 7.89315 8.12492 8.25411 8.58700 8.97492 9.49619 10.95190 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.010724 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.225508 B = 2610.399190 C = 3896.530756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.051 3.949 4 N -0.534 5.534 5 C 0.066 3.934 6 C -0.186 4.186 7 C 0.232 3.768 8 H 0.042 0.958 9 C -0.496 4.496 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.884 5.884 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.019 4.019 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.154 4.154 21 C -0.137 4.137 22 C -0.101 4.101 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.263 0.737 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -4.875 -1.750 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.078 4.078 4 N -0.258 5.258 5 C -0.062 4.062 6 C -0.244 4.244 7 C 0.127 3.873 8 H 0.060 0.940 9 C -0.534 4.534 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.521 5.521 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.021 4.021 18 C -0.134 4.134 19 C -0.151 4.151 20 C -0.172 4.172 21 C -0.155 4.155 22 C -0.119 4.119 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.600 -4.964 -2.067 8.513 hybrid contribution 0.865 0.750 0.717 1.351 sum -5.736 -4.214 -1.350 7.244 Atomic orbital electron populations 1.21736 0.96685 1.00793 1.01453 1.21523 0.94393 0.97818 1.01922 1.22085 0.90454 0.95481 0.99771 1.62333 1.03201 1.23389 1.36832 1.21886 1.01241 0.95570 0.87476 1.22353 0.99584 1.03431 0.99079 1.18478 0.94506 0.84271 0.90078 0.94000 1.20876 0.89437 1.04244 1.38883 0.91866 1.24966 0.98595 0.95240 0.94879 1.69922 1.35788 1.05312 1.41084 0.86626 0.85445 0.77318 0.78503 1.20157 1.21349 1.20114 1.20466 0.90960 0.93121 0.97513 1.21068 0.98674 0.96320 0.97318 1.20942 1.01783 0.98947 0.93389 1.20791 1.03427 0.95548 0.97463 1.20993 1.01061 0.95983 0.97491 1.20947 0.99182 1.00083 0.91715 0.93300 0.93263 0.92930 0.91666 0.92524 0.95730 0.91699 0.93258 0.89720 0.94208 0.93870 0.90904 0.92732 0.86693 0.87775 0.87939 0.87777 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.79 5.73 -26.73 -0.15 -1.95 16 3 C 0.05 0.92 4.53 -3.82 -0.02 0.90 16 4 N -0.53 -10.95 4.14 -229.42 -0.95 -11.90 16 5 C 0.07 1.29 5.48 -3.82 -0.02 1.27 16 6 C -0.19 -3.52 9.20 37.16 0.34 -3.18 16 7 C 0.23 5.47 1.25 -70.01 -0.09 5.38 16 8 H 0.04 1.11 5.67 -51.93 -0.29 0.81 16 9 C -0.50 -12.80 6.63 -34.44 -0.23 -13.03 16 10 H 0.06 1.66 7.72 -52.49 -0.40 1.26 16 11 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 12 N -0.88 -24.13 12.85 55.43 0.71 -23.42 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.02 -0.44 3.46 -104.63 -0.36 -0.80 16 18 C -0.12 -2.53 9.67 -39.59 -0.38 -2.92 16 19 C -0.13 -2.55 10.05 -39.59 -0.40 -2.95 16 20 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 21 C -0.14 -2.57 10.05 -39.58 -0.40 -2.96 16 22 C -0.10 -2.12 9.13 -39.59 -0.36 -2.49 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.84 6.68 -51.93 -0.35 0.49 16 28 H 0.02 0.46 6.19 -51.93 -0.32 0.14 16 29 H 0.06 1.25 6.84 -51.93 -0.35 0.89 16 30 H 0.05 0.85 6.49 -51.93 -0.34 0.51 16 31 H 0.08 1.80 6.69 -51.93 -0.35 1.45 16 32 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 33 H 0.04 0.74 8.14 -51.94 -0.42 0.31 16 34 H 0.07 1.63 6.40 -51.92 -0.33 1.29 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.12 2.63 7.98 -52.49 -0.42 2.21 16 37 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.49 7.96 -52.49 -0.42 2.07 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -26.47 316.84 -9.12 -35.58 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.44 Total: 4.94 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.19 Total: -25.77 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.24 Total: -35.32 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.47 -9.12 -35.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.867 kcal (2) G-P(sol) polarization free energy of solvation -26.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds