Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 N 1.46901 * 109.47097 * 185.43117 * 3 2 1 5 5 C 1.46901 * 111.00228 * 295.95171 * 4 3 2 6 6 C 1.52998 * 109.47497 * 293.80504 * 5 4 3 7 7 C 1.46900 * 110.99864 * 172.00066 * 4 3 2 8 8 H 1.09004 * 109.47103 * 59.99773 * 7 4 3 9 9 C 1.50706 * 109.47122 * 300.00155 * 7 4 3 10 10 H 1.07996 * 119.99886 * 125.81991 * 9 7 4 11 11 C 1.37872 * 119.99658 * 305.55006 * 9 7 4 12 12 N 1.31516 * 120.00352 * 9.94255 * 11 9 7 13 13 Si 1.86801 * 119.99743 * 189.95014 * 11 9 7 14 14 H 1.48495 * 109.47399 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46994 * 119.99616 * 13 11 9 16 16 H 1.48499 * 109.47010 * 239.99849 * 13 11 9 17 17 C 1.50700 * 109.47236 * 180.02562 * 7 4 3 18 18 C 1.38234 * 119.99796 * 213.02235 * 17 7 4 19 19 C 1.38234 * 119.99740 * 179.80796 * 18 17 7 20 20 C 1.38237 * 120.00166 * 0.39781 * 19 18 17 21 21 C 1.38240 * 119.99570 * 359.85364 * 20 19 18 22 22 C 1.38232 * 120.00265 * 359.95727 * 21 20 19 23 23 H 1.08994 * 109.47224 * 299.99922 * 1 2 3 24 24 H 1.09004 * 109.47009 * 60.00308 * 1 2 3 25 25 H 1.09001 * 109.46934 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47291 * 239.99791 * 2 1 3 27 27 H 1.09006 * 109.47197 * 120.00201 * 2 1 3 28 28 H 1.08999 * 109.46880 * 65.43149 * 3 2 1 29 29 H 1.08991 * 109.46871 * 305.43440 * 3 2 1 30 30 H 1.09003 * 109.47015 * 53.80429 * 5 4 3 31 31 H 1.09001 * 109.47323 * 173.80166 * 5 4 3 32 32 H 1.09002 * 109.46782 * 63.78150 * 6 5 4 33 33 H 1.08995 * 109.47448 * 183.78187 * 6 5 4 34 34 H 1.09001 * 109.47139 * 303.78827 * 6 5 4 35 35 H 0.97002 * 119.99783 * 180.02562 * 12 11 9 36 36 H 1.07999 * 120.00176 * 359.97438 * 18 17 7 37 37 H 1.07995 * 120.00396 * 180.22929 * 19 18 17 38 38 H 1.08000 * 120.00425 * 179.83491 * 20 19 18 39 39 H 1.08007 * 119.99722 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.99779 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4446 -0.1311 5 6 4.1367 0.8065 1.0306 6 6 3.8852 1.6549 2.2787 7 6 4.0123 2.8087 -0.3252 8 1 3.7372 3.4245 0.5311 9 6 3.4141 3.3947 -1.5782 10 1 2.8981 4.3426 -1.5380 11 6 3.5303 2.7233 -2.7768 12 7 3.9859 1.4898 -2.7981 13 14 3.0409 3.5659 -4.3705 14 1 2.5625 4.9407 -4.0770 15 1 4.2160 3.6330 -5.2761 16 1 1.9546 2.7936 -5.0253 17 6 5.5132 2.7708 -0.4560 18 6 6.2751 3.8213 0.0202 19 6 7.6521 3.7848 -0.0962 20 6 8.2665 2.7015 -0.6961 21 6 7.5041 1.6534 -1.1769 22 6 6.1274 1.6881 -1.0570 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7582 1.9275 0.9346 29 1 1.5994 1.9836 -0.8373 30 1 3.7129 -0.1873 1.1753 31 1 5.2098 0.7224 0.8586 32 1 2.8161 1.6833 2.4893 33 1 4.4111 1.2176 3.1274 34 1 4.2490 2.6682 2.1087 35 1 4.0681 1.0177 -3.6415 36 1 5.7949 4.6694 0.4855 37 1 8.2477 4.6037 0.2791 38 1 9.3421 2.6741 -0.7894 39 1 7.9841 0.8072 -1.6460 40 1 5.5318 0.8695 -1.4331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = 31.621559 kcal Electronic energy + Delta-G solvation = -19086.922853 eV Core-core repulsion = 16480.728630 eV Total energy + Delta-G solvation = -2606.194222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.69881 -36.77835 -33.28483 -32.32778 -30.34563 -29.67886 -28.81168 -26.45475 -24.68233 -22.91838 -21.79178 -21.28950 -19.90568 -18.73828 -16.40854 -15.54722 -15.25395 -14.67954 -14.24971 -14.03314 -13.85638 -13.16565 -13.11075 -12.59214 -12.32965 -12.20967 -12.05086 -11.74157 -11.50312 -11.30051 -11.08001 -10.91662 -10.72012 -10.64033 -10.48641 -10.11728 -10.10527 -9.90562 -9.70348 -9.27049 -9.12441 -8.43853 -7.80959 -7.38396 -6.69683 -5.86784 -4.05450 2.47819 2.57916 3.29864 3.39142 3.42404 4.43728 4.93798 5.16769 5.40441 5.66045 5.76632 5.80433 5.84504 5.92602 5.96732 6.00818 6.05933 6.21885 6.32138 6.38022 6.40537 6.50644 6.56583 6.65659 6.66730 6.72933 6.79653 6.91516 7.01650 7.10522 7.18563 7.27322 7.33131 7.51145 7.68845 7.86392 7.99830 8.16178 8.28323 8.54108 8.74072 9.06070 9.60134 11.05550 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.011614 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.799527 B = 2410.338261 C = 3572.738760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.076 3.924 4 N -0.484 5.484 5 C 0.039 3.961 6 C -0.189 4.189 7 C 0.246 3.754 8 H 0.001 0.999 9 C -0.530 4.530 10 H 0.056 0.944 11 C 0.090 3.910 12 N -0.821 5.821 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.026 4.026 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.072 4.072 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.004 0.996 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -1.971 5.395 5.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.052 4.052 4 N -0.206 5.206 5 C -0.090 4.090 6 C -0.249 4.249 7 C 0.140 3.860 8 H 0.019 0.981 9 C -0.568 4.568 10 H 0.074 0.926 11 C -0.118 4.118 12 N -0.454 5.454 13 Si 0.702 3.298 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.027 4.027 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.171 4.171 21 C -0.166 4.166 22 C -0.091 4.091 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.586 -2.414 4.837 5.437 hybrid contribution -0.261 1.088 -0.319 1.163 sum 0.325 -1.326 4.517 4.719 Atomic orbital electron populations 1.21717 0.97174 1.00331 1.01195 1.21524 0.93913 0.98578 1.01551 1.21776 0.89728 0.94686 0.99041 1.62333 1.03216 1.21155 1.33940 1.22291 1.00430 0.97248 0.89007 1.22435 1.00724 1.01980 0.99724 1.18247 0.87430 0.85607 0.94746 0.98145 1.20849 1.37501 1.06343 0.92097 0.92568 1.24856 0.94533 0.94264 0.98154 1.70065 1.41859 1.08721 1.24769 0.86835 0.78193 0.80094 0.84657 1.19947 1.21024 1.21115 1.20324 0.96681 0.92315 0.93424 1.20886 0.93409 0.98859 1.02453 1.20757 0.94726 0.98141 1.02359 1.20792 0.98236 0.95642 1.02478 1.21182 0.95306 0.98250 1.01912 1.21817 0.92644 1.00308 0.94296 0.93698 0.92862 0.93742 0.91091 0.93587 0.97809 0.89791 0.92524 0.91434 0.93437 0.93938 0.92495 0.93556 0.87954 0.88137 0.88323 0.88065 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.15 0.37 -1.84 16 2 C -0.12 -2.09 5.67 -26.73 -0.15 -2.24 16 3 C 0.08 1.55 4.61 -3.82 -0.02 1.54 16 4 N -0.48 -10.53 2.53 -229.43 -0.58 -11.11 16 5 C 0.04 0.76 5.33 -3.82 -0.02 0.74 16 6 C -0.19 -3.32 9.24 37.16 0.34 -2.98 16 7 C 0.25 5.78 1.38 -70.01 -0.10 5.68 16 8 H 0.00 0.02 6.33 -51.93 -0.33 -0.31 16 9 C -0.53 -13.71 7.21 -34.44 -0.25 -13.96 16 10 H 0.06 1.49 7.83 -52.49 -0.41 1.07 16 11 C 0.09 2.32 5.17 -17.82 -0.09 2.23 16 12 N -0.82 -21.11 9.20 55.43 0.51 -20.60 16 13 Si 0.87 20.48 29.55 -169.99 -5.02 15.46 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.03 -0.60 3.86 -104.63 -0.40 -1.01 16 18 C -0.14 -2.91 9.69 -39.58 -0.38 -3.30 16 19 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 20 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 21 C -0.15 -3.02 10.05 -39.58 -0.40 -3.42 16 22 C -0.07 -1.64 6.41 -39.59 -0.25 -1.90 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.05 0.77 6.64 -51.93 -0.34 0.42 16 28 H 0.00 0.08 6.38 -51.93 -0.33 -0.25 16 29 H 0.08 1.93 6.81 -51.93 -0.35 1.58 16 30 H 0.06 1.03 6.25 -51.93 -0.32 0.71 16 31 H 0.07 1.37 5.85 -51.93 -0.30 1.07 16 32 H 0.05 0.81 6.65 -51.93 -0.35 0.46 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.07 6.23 -51.93 -0.32 0.75 16 35 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.16 3.96 5.60 -52.49 -0.29 3.66 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -25.67 307.05 -8.92 -34.59 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.30 Total: 3.92 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -2.15 Total: -26.88 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: -0.07 Total: -31.72 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.67 -8.92 -34.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.213 kcal (2) G-P(sol) polarization free energy of solvation -25.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds