Wall clock time and date at job start Mon Mar 30 2020 06:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 N 1.46901 * 109.47097 * 185.43117 * 3 2 1 5 5 C 1.46901 * 111.00228 * 295.95171 * 4 3 2 6 6 C 1.52998 * 109.47497 * 293.80504 * 5 4 3 7 7 C 1.46900 * 110.99864 * 172.00066 * 4 3 2 8 8 H 1.09004 * 109.47103 * 59.99773 * 7 4 3 9 9 C 1.50706 * 109.47122 * 300.00155 * 7 4 3 10 10 H 1.07996 * 119.99886 * 125.81991 * 9 7 4 11 11 C 1.37872 * 119.99658 * 305.55006 * 9 7 4 12 12 N 1.31516 * 120.00352 * 9.94255 * 11 9 7 13 13 Si 1.86801 * 119.99743 * 189.95014 * 11 9 7 14 14 H 1.48495 * 109.47399 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46994 * 119.99616 * 13 11 9 16 16 H 1.48499 * 109.47010 * 239.99849 * 13 11 9 17 17 C 1.50700 * 109.47236 * 180.02562 * 7 4 3 18 18 C 1.38234 * 119.99796 * 213.02235 * 17 7 4 19 19 C 1.38234 * 119.99740 * 179.80796 * 18 17 7 20 20 C 1.38237 * 120.00166 * 0.39781 * 19 18 17 21 21 C 1.38240 * 119.99570 * 359.85364 * 20 19 18 22 22 C 1.38232 * 120.00265 * 359.95727 * 21 20 19 23 23 H 1.08994 * 109.47224 * 299.99922 * 1 2 3 24 24 H 1.09004 * 109.47009 * 60.00308 * 1 2 3 25 25 H 1.09001 * 109.46934 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47291 * 239.99791 * 2 1 3 27 27 H 1.09006 * 109.47197 * 120.00201 * 2 1 3 28 28 H 1.08999 * 109.46880 * 65.43149 * 3 2 1 29 29 H 1.08991 * 109.46871 * 305.43440 * 3 2 1 30 30 H 1.09003 * 109.47015 * 53.80429 * 5 4 3 31 31 H 1.09001 * 109.47323 * 173.80166 * 5 4 3 32 32 H 1.09002 * 109.46782 * 63.78150 * 6 5 4 33 33 H 1.08995 * 109.47448 * 183.78187 * 6 5 4 34 34 H 1.09001 * 109.47139 * 303.78827 * 6 5 4 35 35 H 0.97002 * 119.99783 * 180.02562 * 12 11 9 36 36 H 1.07999 * 120.00176 * 359.97438 * 18 17 7 37 37 H 1.07995 * 120.00396 * 180.22929 * 19 18 17 38 38 H 1.08000 * 120.00425 * 179.83491 * 20 19 18 39 39 H 1.08007 * 119.99722 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.99779 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4446 -0.1311 5 6 4.1367 0.8065 1.0306 6 6 3.8852 1.6549 2.2787 7 6 4.0123 2.8087 -0.3252 8 1 3.7372 3.4245 0.5311 9 6 3.4141 3.3947 -1.5782 10 1 2.8981 4.3426 -1.5380 11 6 3.5303 2.7233 -2.7768 12 7 3.9859 1.4898 -2.7981 13 14 3.0409 3.5659 -4.3705 14 1 2.5625 4.9407 -4.0770 15 1 4.2160 3.6330 -5.2761 16 1 1.9546 2.7936 -5.0253 17 6 5.5132 2.7708 -0.4560 18 6 6.2751 3.8213 0.0202 19 6 7.6521 3.7848 -0.0962 20 6 8.2665 2.7015 -0.6961 21 6 7.5041 1.6534 -1.1769 22 6 6.1274 1.6881 -1.0570 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7582 1.9275 0.9346 29 1 1.5994 1.9836 -0.8373 30 1 3.7129 -0.1873 1.1753 31 1 5.2098 0.7224 0.8586 32 1 2.8161 1.6833 2.4893 33 1 4.4111 1.2176 3.1274 34 1 4.2490 2.6682 2.1087 35 1 4.0681 1.0177 -3.6415 36 1 5.7949 4.6694 0.4855 37 1 8.2477 4.6037 0.2791 38 1 9.3421 2.6741 -0.7894 39 1 7.9841 0.8072 -1.6460 40 1 5.5318 0.8695 -1.4331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:36 Heat of formation + Delta-G solvation = 20.714645 kcal Electronic energy + Delta-G solvation = -19087.395812 eV Core-core repulsion = 16480.728630 eV Total energy + Delta-G solvation = -2606.667182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34891 -38.37834 -34.98234 -33.96960 -32.01252 -31.28611 -30.38028 -28.19844 -26.25434 -24.67138 -23.29455 -22.89139 -21.50404 -20.40310 -18.25087 -17.15321 -16.97436 -16.41769 -15.88488 -15.64884 -15.50784 -14.72441 -14.58127 -14.14120 -13.96368 -13.78552 -13.61394 -13.37906 -13.11174 -12.87158 -12.69577 -12.59002 -12.50012 -12.16963 -12.13008 -11.76739 -11.71154 -11.48037 -11.40021 -10.91283 -10.87518 -10.40322 -9.42345 -9.05232 -8.39308 -7.80181 -6.05570 0.85536 0.98277 1.39941 1.45627 1.51879 2.49256 3.22838 3.38575 3.68481 4.21427 4.34150 4.38087 4.39310 4.41495 4.52714 4.55302 4.66832 4.73858 4.76343 4.80335 4.95888 5.00292 5.09123 5.13885 5.18490 5.22110 5.27629 5.31956 5.47976 5.50617 5.61711 5.65287 5.70638 5.80086 5.90796 6.07324 6.25932 6.39651 6.58553 6.68319 7.04184 7.22763 7.60946 9.07346 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.011614 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.799527 B = 2410.338261 C = 3572.738760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.080 3.920 4 N -0.496 5.496 5 C 0.042 3.958 6 C -0.179 4.179 7 C 0.250 3.750 8 H -0.013 1.013 9 C -0.549 4.549 10 H 0.038 0.962 11 C 0.062 3.938 12 N -0.828 5.828 13 Si 0.920 3.080 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.282 1.282 17 C -0.046 4.046 18 C -0.154 4.154 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.088 4.088 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.008 0.992 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -2.330 6.117 6.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.048 4.048 4 N -0.218 5.218 5 C -0.086 4.086 6 C -0.238 4.238 7 C 0.144 3.856 8 H 0.004 0.996 9 C -0.587 4.587 10 H 0.056 0.944 11 C -0.145 4.145 12 N -0.461 5.461 13 Si 0.747 3.253 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.208 1.208 17 C -0.047 4.047 18 C -0.172 4.172 19 C -0.155 4.155 20 C -0.165 4.165 21 C -0.173 4.173 22 C -0.107 4.107 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.621 -2.778 5.565 6.428 hybrid contribution -0.530 1.208 -0.499 1.411 sum 1.091 -1.570 5.066 5.415 Atomic orbital electron populations 1.21665 0.94932 1.01848 1.01360 1.21422 0.95832 0.96314 1.01054 1.21722 0.89169 0.96209 0.97739 1.62205 1.03822 1.20163 1.35629 1.22251 0.99607 0.97859 0.88915 1.22308 1.01188 1.00702 0.99615 1.18099 0.88252 0.86178 0.93092 0.99584 1.20958 1.38163 1.05893 0.93701 0.94415 1.25237 0.94798 0.94748 0.99745 1.70177 1.42148 1.09004 1.24788 0.86136 0.77712 0.79146 0.82282 1.20394 1.21316 1.20775 1.20305 0.96289 0.93318 0.94771 1.21089 0.94661 0.98604 1.02876 1.21137 0.94016 0.99111 1.01258 1.21191 1.00026 0.94544 1.00783 1.21435 0.94499 0.99531 1.01800 1.21622 0.93736 0.99849 0.95485 0.92465 0.93794 0.91525 0.93306 0.92187 0.97417 0.93034 0.91287 0.92547 0.93031 0.91561 0.94199 0.93825 0.87606 0.84805 0.84693 0.86178 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.91 71.98 0.71 -3.32 16 2 C -0.11 -3.79 5.67 30.59 0.17 -3.62 16 3 C 0.08 3.33 4.61 86.30 0.40 3.72 16 4 N -0.50 -21.99 2.53 -879.78 -2.23 -24.22 16 5 C 0.04 1.62 5.33 86.30 0.46 2.08 16 6 C -0.18 -6.12 9.24 71.98 0.66 -5.46 16 7 C 0.25 12.12 1.38 43.42 0.06 12.18 16 8 H -0.01 -0.66 6.33 -2.38 -0.02 -0.68 16 9 C -0.55 -29.37 7.21 25.60 0.18 -29.19 16 10 H 0.04 2.08 7.83 -2.91 -0.02 2.06 16 11 C 0.06 3.25 5.17 84.65 0.44 3.68 16 12 N -0.83 -43.47 9.20 21.45 0.20 -43.27 16 13 Si 0.92 42.79 29.55 68.60 2.03 44.82 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 C -0.05 -2.11 3.86 -19.87 -0.08 -2.19 16 18 C -0.15 -6.42 9.69 22.27 0.22 -6.20 16 19 C -0.14 -4.91 10.05 22.27 0.22 -4.68 16 20 C -0.15 -5.13 10.05 22.27 0.22 -4.91 16 21 C -0.15 -6.05 10.05 22.27 0.22 -5.82 16 22 C -0.09 -4.02 6.41 22.27 0.14 -3.88 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.92 6.64 -2.38 -0.02 1.90 16 28 H 0.01 0.32 6.38 -2.39 -0.02 0.30 16 29 H 0.05 2.46 6.81 -2.39 -0.02 2.45 16 30 H 0.07 2.44 6.25 -2.39 -0.01 2.43 16 31 H 0.06 2.29 5.85 -2.39 -0.01 2.28 16 32 H 0.05 1.70 6.65 -2.39 -0.02 1.68 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.49 6.23 -2.39 -0.01 1.47 16 35 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 36 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 38 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.14 6.93 5.60 -2.91 -0.02 6.92 16 Total: -1.00 -55.55 307.05 5.04 -50.50 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.00 Total: 19.77 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 4.04 Total: -47.60 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -2.03 Total: -67.49 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -55.55 5.04 -50.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.219 kcal (2) G-P(sol) polarization free energy of solvation -55.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds