Wall clock time and date at job start Mon Mar 30 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47362 * 2 1 4 4 C 1.52998 * 109.46859 * 119.99719 * 2 1 3 5 5 N 1.46905 * 109.46807 * 65.00372 * 4 2 1 6 6 C 1.46894 * 111.00318 * 66.04497 * 5 4 2 7 7 C 1.46903 * 110.99853 * 189.99797 * 5 4 2 8 8 H 1.08998 * 109.47138 * 300.00294 * 7 5 4 9 9 C 1.50705 * 109.46904 * 59.99884 * 7 5 4 10 10 H 1.07992 * 119.99839 * 54.81916 * 9 7 5 11 11 C 1.37880 * 119.99763 * 234.81545 * 9 7 5 12 12 N 1.31516 * 119.99585 * 183.02532 * 11 9 7 13 13 Si 1.86803 * 120.00192 * 3.02238 * 11 9 7 14 14 H 1.48506 * 109.46536 * 85.65281 * 13 11 9 15 15 H 1.48499 * 109.47248 * 205.65075 * 13 11 9 16 16 H 1.48499 * 109.47183 * 325.65571 * 13 11 9 17 17 C 1.50699 * 109.47403 * 179.97438 * 7 5 4 18 18 C 1.38234 * 119.99653 * 313.05876 * 17 7 5 19 19 C 1.38242 * 120.00030 * 179.80636 * 18 17 7 20 20 C 1.38236 * 119.99708 * 0.39582 * 19 18 17 21 21 C 1.38234 * 119.99785 * 359.85494 * 20 19 18 22 22 C 1.38231 * 120.00123 * 133.32386 * 17 7 5 23 23 H 1.08999 * 109.46973 * 300.00129 * 1 2 3 24 24 H 1.09007 * 109.46639 * 60.00317 * 1 2 3 25 25 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47480 * 239.99870 * 2 1 3 27 27 H 1.08995 * 109.47045 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46961 * 300.00245 * 3 2 1 29 29 H 1.09001 * 109.46929 * 59.99533 * 3 2 1 30 30 H 1.08996 * 109.47762 * 305.00188 * 4 2 1 31 31 H 1.08998 * 109.47293 * 184.99618 * 4 2 1 32 32 H 1.08997 * 109.47657 * 183.95056 * 6 5 4 33 33 H 1.08998 * 109.47035 * 303.95594 * 6 5 4 34 34 H 1.09006 * 109.47046 * 63.95194 * 6 5 4 35 35 H 0.97004 * 119.99605 * 180.02562 * 12 11 9 36 36 H 1.08003 * 120.00104 * 359.97438 * 18 17 7 37 37 H 1.07997 * 120.00199 * 180.22831 * 19 18 17 38 38 H 1.07992 * 120.00331 * 179.83105 * 20 19 18 39 39 H 1.08006 * 120.00113 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00264 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 -2.1367 1.1904 6 6 2.3340 -2.8246 0.0866 7 6 1.9123 -2.8080 2.4707 8 1 2.9755 -2.7468 2.7029 9 6 1.1204 -2.1343 3.5617 10 1 0.0509 -2.0223 3.4620 11 6 1.7613 -1.6611 4.6871 12 7 1.0634 -1.1269 5.6654 13 14 3.6207 -1.7789 4.8220 14 1 4.2402 -0.6004 4.1642 15 1 4.0121 -1.8091 6.2542 16 1 4.0878 -3.0207 4.1549 17 6 1.5015 -4.2545 2.3725 18 6 0.2764 -4.5895 1.8268 19 6 -0.0988 -5.9167 1.7330 20 6 0.7477 -6.9084 2.1924 21 6 1.9705 -6.5730 2.7428 22 6 2.3474 -5.2461 2.8330 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1262 -0.6444 1.2952 32 1 1.9760 -3.8521 0.0219 33 1 2.1240 -2.3070 -0.8494 34 1 3.4089 -2.8252 0.2682 35 1 1.5143 -0.7937 6.4570 36 1 -0.3864 -3.8145 1.4713 37 1 -1.0543 -6.1787 1.3033 38 1 0.4535 -7.9451 2.1216 39 1 2.6318 -7.3477 3.1021 40 1 3.3029 -4.9841 3.2629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:19 Heat of formation + Delta-G solvation = 18.479285 kcal Electronic energy + Delta-G solvation = -18687.897752 eV Core-core repulsion = 16081.133638 eV Total energy + Delta-G solvation = -2606.764114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.87935 -37.13659 -34.30455 -32.40034 -30.59219 -30.13411 -27.68161 -26.63316 -25.94477 -23.60525 -22.11720 -21.70511 -19.56306 -19.01913 -17.05644 -16.11508 -15.41112 -14.68323 -14.52580 -14.21495 -13.86662 -13.53363 -13.25760 -12.75209 -12.68435 -12.62033 -12.34606 -11.95630 -11.80239 -11.75514 -11.36407 -11.09935 -10.88636 -10.80248 -10.48288 -10.44791 -10.27295 -9.93996 -9.84121 -9.71697 -9.46637 -8.67591 -8.20090 -7.82082 -7.26455 -6.19981 -4.17862 2.11637 2.16721 3.17590 3.25228 3.27446 4.28380 4.50287 4.86783 5.18641 5.38369 5.47808 5.53941 5.58863 5.68847 5.74315 5.93853 5.98351 6.03837 6.05954 6.14526 6.19236 6.27983 6.31522 6.35625 6.47092 6.49553 6.52680 6.64970 6.66741 6.76152 6.83965 6.95387 7.05770 7.16390 7.24715 7.42541 7.53316 7.78128 8.04766 8.12907 8.55110 8.92396 9.42091 10.92128 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.010402 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.949750 B = 2691.122785 C = 3745.068969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.067 3.933 5 N -0.528 5.528 6 C 0.018 3.982 7 C 0.207 3.793 8 H 0.017 0.983 9 C -0.487 4.487 10 H 0.084 0.916 11 C 0.077 3.923 12 N -0.887 5.887 13 Si 0.865 3.135 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.265 1.265 17 C -0.027 4.027 18 C -0.094 4.094 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.125 4.125 22 C -0.136 4.136 23 H 0.052 0.948 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -3.051 -9.645 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.061 4.061 5 N -0.252 5.252 6 C -0.131 4.131 7 C 0.101 3.899 8 H 0.034 0.966 9 C -0.525 4.525 10 H 0.102 0.898 11 C -0.127 4.127 12 N -0.524 5.524 13 Si 0.693 3.307 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.028 4.028 18 C -0.112 4.112 19 C -0.148 4.148 20 C -0.167 4.167 21 C -0.144 4.144 22 C -0.154 4.154 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.536 -2.971 -9.526 10.096 hybrid contribution 1.962 -0.065 0.504 2.027 sum 3.498 -3.035 -9.022 10.141 Atomic orbital electron populations 1.21653 0.94754 1.02475 1.00033 1.21139 0.96765 0.94871 0.98347 1.21816 1.00331 0.96808 1.01369 1.22022 0.96163 0.89201 0.98738 1.62219 1.57058 1.01577 1.04322 1.22432 0.95483 0.99609 0.95560 1.18889 0.95085 0.87669 0.88214 0.96567 1.20771 0.96278 1.35707 0.99750 0.89800 1.25056 0.97569 0.94544 0.95541 1.69875 1.35621 1.39765 1.07135 0.87052 0.87084 0.79124 0.77426 1.19980 1.21205 1.18990 1.20305 0.93541 0.95998 0.92980 1.20975 0.96300 0.95276 0.98666 1.21074 0.99043 0.93510 1.01142 1.20857 0.95267 0.98389 1.02146 1.20916 0.96781 0.95875 1.00779 1.21027 0.99930 0.92726 1.01735 0.92841 0.94647 0.91482 0.92178 0.93431 0.93269 0.92533 0.88554 0.97007 0.91993 0.92523 0.97356 0.92392 0.85740 0.87223 0.87454 0.87370 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.08 37.16 0.34 -1.75 16 2 C -0.09 -1.48 2.84 -90.62 -0.26 -1.74 16 3 C -0.15 -2.05 9.19 37.16 0.34 -1.71 16 4 C 0.07 1.31 4.19 -3.82 -0.02 1.29 16 5 N -0.53 -10.66 3.62 -237.69 -0.86 -11.52 16 6 C 0.02 0.31 8.99 60.06 0.54 0.85 16 7 C 0.21 4.75 1.63 -70.01 -0.11 4.63 16 8 H 0.02 0.40 4.32 -51.93 -0.22 0.18 16 9 C -0.49 -12.95 7.40 -34.44 -0.25 -13.21 16 10 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 11 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.89 -25.99 13.96 55.43 0.77 -25.21 16 13 Si 0.87 20.88 27.21 -169.99 -4.63 16.26 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.26 -6.16 6.02 56.52 0.34 -5.82 16 17 C -0.03 -0.58 3.55 -104.63 -0.37 -0.95 16 18 C -0.09 -1.86 8.46 -39.58 -0.33 -2.19 16 19 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 20 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.14 -2.73 9.67 -39.58 -0.38 -3.11 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 1.14 7.75 -51.93 -0.40 0.73 16 26 H 0.06 0.91 6.26 -51.93 -0.33 0.59 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 2.18 6.77 -51.93 -0.35 1.83 16 31 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 32 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 33 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 34 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.50 7.93 -52.48 -0.42 2.08 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.11 2.18 7.59 -52.48 -0.40 1.79 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -27.86 316.43 -8.37 -36.23 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.62 Total: 3.39 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.80 Total: -23.92 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.09 Total: -36.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.63 Total: 16.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.86 -8.37 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.707 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds