Wall clock time and date at job start Mon Mar 30 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47362 * 2 1 4 4 C 1.52998 * 109.46859 * 119.99719 * 2 1 3 5 5 N 1.46905 * 109.46807 * 65.00372 * 4 2 1 6 6 C 1.46894 * 111.00318 * 66.04497 * 5 4 2 7 7 C 1.46903 * 110.99853 * 189.99797 * 5 4 2 8 8 H 1.08998 * 109.47138 * 300.00294 * 7 5 4 9 9 C 1.50705 * 109.46904 * 59.99884 * 7 5 4 10 10 H 1.07992 * 119.99839 * 54.81916 * 9 7 5 11 11 C 1.37880 * 119.99763 * 234.81545 * 9 7 5 12 12 N 1.31516 * 119.99585 * 183.02532 * 11 9 7 13 13 Si 1.86803 * 120.00192 * 3.02238 * 11 9 7 14 14 H 1.48506 * 109.46536 * 85.65281 * 13 11 9 15 15 H 1.48499 * 109.47248 * 205.65075 * 13 11 9 16 16 H 1.48499 * 109.47183 * 325.65571 * 13 11 9 17 17 C 1.50699 * 109.47403 * 179.97438 * 7 5 4 18 18 C 1.38234 * 119.99653 * 313.05876 * 17 7 5 19 19 C 1.38242 * 120.00030 * 179.80636 * 18 17 7 20 20 C 1.38236 * 119.99708 * 0.39582 * 19 18 17 21 21 C 1.38234 * 119.99785 * 359.85494 * 20 19 18 22 22 C 1.38231 * 120.00123 * 133.32386 * 17 7 5 23 23 H 1.08999 * 109.46973 * 300.00129 * 1 2 3 24 24 H 1.09007 * 109.46639 * 60.00317 * 1 2 3 25 25 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47480 * 239.99870 * 2 1 3 27 27 H 1.08995 * 109.47045 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46961 * 300.00245 * 3 2 1 29 29 H 1.09001 * 109.46929 * 59.99533 * 3 2 1 30 30 H 1.08996 * 109.47762 * 305.00188 * 4 2 1 31 31 H 1.08998 * 109.47293 * 184.99618 * 4 2 1 32 32 H 1.08997 * 109.47657 * 183.95056 * 6 5 4 33 33 H 1.08998 * 109.47035 * 303.95594 * 6 5 4 34 34 H 1.09006 * 109.47046 * 63.95194 * 6 5 4 35 35 H 0.97004 * 119.99605 * 180.02562 * 12 11 9 36 36 H 1.08003 * 120.00104 * 359.97438 * 18 17 7 37 37 H 1.07997 * 120.00199 * 180.22831 * 19 18 17 38 38 H 1.07992 * 120.00331 * 179.83105 * 20 19 18 39 39 H 1.08006 * 120.00113 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00264 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 -2.1367 1.1904 6 6 2.3340 -2.8246 0.0866 7 6 1.9123 -2.8080 2.4707 8 1 2.9755 -2.7468 2.7029 9 6 1.1204 -2.1343 3.5617 10 1 0.0509 -2.0223 3.4620 11 6 1.7613 -1.6611 4.6871 12 7 1.0634 -1.1269 5.6654 13 14 3.6207 -1.7789 4.8220 14 1 4.2402 -0.6004 4.1642 15 1 4.0121 -1.8091 6.2542 16 1 4.0878 -3.0207 4.1549 17 6 1.5015 -4.2545 2.3725 18 6 0.2764 -4.5895 1.8268 19 6 -0.0988 -5.9167 1.7330 20 6 0.7477 -6.9084 2.1924 21 6 1.9705 -6.5730 2.7428 22 6 2.3474 -5.2461 2.8330 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1262 -0.6444 1.2952 32 1 1.9760 -3.8521 0.0219 33 1 2.1240 -2.3070 -0.8494 34 1 3.4089 -2.8252 0.2682 35 1 1.5143 -0.7937 6.4570 36 1 -0.3864 -3.8145 1.4713 37 1 -1.0543 -6.1787 1.3033 38 1 0.4535 -7.9451 2.1216 39 1 2.6318 -7.3477 3.1021 40 1 3.3029 -4.9841 3.2629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:19 Heat of formation + Delta-G solvation = 3.431572 kcal Electronic energy + Delta-G solvation = -18688.550270 eV Core-core repulsion = 16081.133638 eV Total energy + Delta-G solvation = -2607.416632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41327 -38.61934 -35.82090 -34.37598 -32.12259 -31.57099 -29.44469 -27.87184 -27.46105 -25.40008 -23.60940 -23.15128 -21.13115 -20.50424 -19.11422 -17.57211 -17.01004 -16.36164 -16.05348 -15.69371 -15.42915 -15.04094 -14.84242 -14.59556 -14.13396 -14.00694 -13.87048 -13.49945 -13.23038 -13.07579 -12.94830 -12.74750 -12.39364 -12.35719 -12.04294 -11.88207 -11.78772 -11.67719 -11.51484 -11.30620 -11.14901 -10.75282 -9.64119 -9.33845 -8.91043 -8.33557 -6.33966 0.66078 0.71925 1.23543 1.25075 1.33067 2.24914 2.88850 3.18461 3.38543 4.01049 4.15424 4.19694 4.26767 4.35447 4.37549 4.44356 4.51990 4.59679 4.69248 4.75065 4.85298 4.89612 4.90997 4.97004 5.07967 5.10027 5.13982 5.19321 5.28157 5.32565 5.36805 5.49312 5.58120 5.64805 5.74141 5.78597 6.00164 6.13673 6.31528 6.46516 6.67282 6.76801 7.29472 8.82868 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.010402 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.949750 B = 2691.122785 C = 3745.068969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.069 3.931 5 N -0.532 5.532 6 C 0.024 3.976 7 C 0.214 3.786 8 H 0.004 0.996 9 C -0.477 4.477 10 H 0.038 0.962 11 C 0.025 3.975 12 N -0.938 5.938 13 Si 0.920 3.080 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.250 1.250 17 C -0.055 4.055 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.155 4.155 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.008 0.992 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -4.963 -11.828 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C -0.200 4.200 4 C -0.059 4.059 5 N -0.256 5.256 6 C -0.125 4.125 7 C 0.107 3.893 8 H 0.022 0.978 9 C -0.515 4.515 10 H 0.057 0.943 11 C -0.174 4.174 12 N -0.577 5.577 13 Si 0.745 3.255 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.175 1.175 17 C -0.056 4.056 18 C -0.128 4.128 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.140 4.140 22 C -0.174 4.174 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.456 -4.892 -11.738 12.951 hybrid contribution 1.567 0.440 1.095 1.962 sum 4.023 -4.452 -10.642 12.217 Atomic orbital electron populations 1.21592 0.94783 1.01600 1.00420 1.21118 0.96653 0.95874 0.96825 1.21792 1.00754 0.95385 1.02043 1.22005 0.95653 0.89123 0.99160 1.62091 1.57726 1.01862 1.03920 1.22439 0.95107 0.99665 0.95243 1.18682 0.93436 0.88916 0.88227 0.97806 1.20812 0.94445 1.35335 1.00955 0.94335 1.25731 1.01832 0.94564 0.95288 1.70012 1.37446 1.42188 1.08099 0.86165 0.82021 0.79841 0.77469 1.19268 1.21040 1.17480 1.20204 0.94908 0.95145 0.95381 1.20954 0.95711 0.96542 0.99575 1.21417 1.00375 0.92348 1.00248 1.21334 0.94204 1.00155 0.99865 1.21288 0.97687 0.95253 0.99769 1.21141 0.99811 0.94003 1.02450 0.94967 0.91666 0.93001 0.90334 0.92777 0.90623 0.93837 0.92605 0.97396 0.91932 0.90027 0.97322 0.92472 0.87215 0.84241 0.83416 0.84187 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.08 71.98 0.65 -3.31 16 2 C -0.09 -2.66 2.84 -10.79 -0.03 -2.69 16 3 C -0.14 -3.78 9.19 71.98 0.66 -3.12 16 4 C 0.07 2.74 4.19 86.30 0.36 3.11 16 5 N -0.53 -21.79 3.62 -905.92 -3.28 -25.07 16 6 C 0.02 0.80 8.99 127.69 1.15 1.95 16 7 C 0.21 10.06 1.63 43.42 0.07 10.13 16 8 H 0.00 0.21 4.32 -2.39 -0.01 0.20 16 9 C -0.48 -26.80 7.40 25.60 0.19 -26.61 16 10 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 11 C 0.02 1.41 5.47 84.66 0.46 1.87 16 12 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 13 Si 0.92 44.26 27.21 68.60 1.87 46.12 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.25 -11.36 6.02 99.48 0.60 -10.76 16 17 C -0.06 -2.38 3.55 -19.87 -0.07 -2.45 16 18 C -0.11 -4.29 8.46 22.27 0.19 -4.10 16 19 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 20 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 21 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 22 C -0.16 -6.08 9.67 22.27 0.22 -5.87 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.05 1.76 7.75 -2.39 -0.02 1.74 16 26 H 0.08 2.17 6.26 -2.39 -0.01 2.15 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 2.67 6.77 -2.39 -0.02 2.66 16 31 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 32 H 0.06 2.12 6.43 -2.39 -0.02 2.10 16 33 H 0.08 2.34 6.21 -2.39 -0.01 2.32 16 34 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.11 4.53 7.93 -2.91 -0.02 4.51 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.10 4.03 7.59 -2.91 -0.02 4.01 16 Total: -1.00 -63.95 316.43 4.28 -59.67 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.88 Total: 19.06 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 4.52 Total: -42.22 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.98 Total: -82.63 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.87 Total: 46.12 kcal Total: -63.95 4.28 -59.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.100 kcal (2) G-P(sol) polarization free energy of solvation -63.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds