Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47279 * 2 1 4 4 C 1.53000 * 109.46882 * 119.99566 * 2 1 3 5 5 N 1.46903 * 109.46964 * 60.14755 * 4 2 1 6 6 C 1.46905 * 110.99731 * 201.62507 * 5 4 2 7 7 C 1.46905 * 111.00158 * 77.67308 * 5 4 2 8 8 H 1.09003 * 109.46803 * 51.46481 * 7 5 4 9 9 C 1.50698 * 109.46960 * 291.46205 * 7 5 4 10 10 H 1.08002 * 120.00141 * 330.26720 * 9 7 5 11 11 C 1.37880 * 119.99926 * 150.26179 * 9 7 5 12 12 N 1.31516 * 120.00107 * 6.60232 * 11 9 7 13 13 Si 1.86801 * 119.99994 * 186.59570 * 11 9 7 14 14 H 1.48503 * 109.46932 * 270.00113 * 13 11 9 15 15 H 1.48497 * 109.47322 * 30.00563 * 13 11 9 16 16 H 1.48499 * 109.46800 * 150.00416 * 13 11 9 17 17 C 1.50698 * 109.46841 * 171.46226 * 7 5 4 18 18 C 1.38235 * 119.99891 * 48.55825 * 17 7 5 19 19 C 1.38242 * 119.99467 * 179.78720 * 18 17 7 20 20 C 1.38236 * 120.00248 * 0.43391 * 19 18 17 21 21 C 1.38244 * 119.99669 * 359.81790 * 20 19 18 22 22 C 1.38232 * 120.00159 * 359.97239 * 21 20 19 23 23 H 1.08999 * 109.47267 * 304.45648 * 1 2 3 24 24 H 1.09003 * 109.46934 * 64.45905 * 1 2 3 25 25 H 1.09001 * 109.47005 * 184.45663 * 1 2 3 26 26 H 1.08997 * 109.47256 * 240.00023 * 2 1 3 27 27 H 1.09000 * 109.47790 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46734 * 299.99940 * 3 2 1 29 29 H 1.09000 * 109.47622 * 59.99510 * 3 2 1 30 30 H 1.08996 * 109.47402 * 300.14416 * 4 2 1 31 31 H 1.08997 * 109.47104 * 180.14549 * 4 2 1 32 32 H 1.09000 * 109.47215 * 297.31859 * 6 5 4 33 33 H 1.09003 * 109.46955 * 57.32360 * 6 5 4 34 34 H 1.09003 * 109.46834 * 177.31928 * 6 5 4 35 35 H 0.97008 * 119.99586 * 355.08181 * 12 11 9 36 36 H 1.07986 * 120.00410 * 359.97438 * 18 17 7 37 37 H 1.08001 * 119.99555 * 180.27402 * 19 18 17 38 38 H 1.07996 * 119.99958 * 179.83993 * 20 19 18 39 39 H 1.07994 * 119.99455 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.99664 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5532 -2.1072 1.2476 6 6 1.5655 -2.6711 2.6040 7 6 2.3365 -2.9392 0.3244 8 1 3.3985 -2.8169 0.5373 9 6 2.0565 -2.5155 -1.0944 10 1 1.0941 -2.0995 -1.3538 11 6 3.0288 -2.6588 -2.0614 12 7 4.1515 -3.2824 -1.7777 13 14 2.7517 -1.9672 -3.7744 14 1 2.1044 -2.9978 -4.6254 15 1 1.8740 -0.7724 -3.6898 16 1 4.0564 -1.5819 -4.3696 17 6 1.9518 -4.3854 0.5021 18 6 0.6181 -4.7486 0.5200 19 6 0.2654 -6.0758 0.6785 20 6 1.2460 -7.0385 0.8282 21 6 2.5796 -6.6745 0.8154 22 6 2.9325 -5.3479 0.6525 23 1 -0.3634 0.5814 0.8473 24 1 -0.3633 0.4431 -0.9273 25 1 -0.3633 -1.0246 0.0799 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6746 -0.2088 2.1392 31 1 3.1300 -0.7189 1.2507 32 1 2.5899 -2.7027 2.9751 33 1 0.9597 -2.0481 3.2620 34 1 1.1560 -3.6811 2.5813 35 1 4.3258 -3.5787 -0.8706 36 1 -0.1481 -3.9960 0.4071 37 1 -0.7765 -6.3601 0.6881 38 1 0.9703 -8.0750 0.9546 39 1 3.3457 -7.4267 0.9319 40 1 3.9743 -5.0637 0.6422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = 19.323482 kcal Electronic energy + Delta-G solvation = -18978.725933 eV Core-core repulsion = 16371.998426 eV Total energy + Delta-G solvation = -2606.727507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.91379 -37.02001 -33.95417 -32.80797 -30.21742 -30.06750 -27.06926 -26.38540 -25.82095 -23.58737 -21.99112 -21.52462 -19.95649 -18.96203 -16.98936 -16.04166 -14.95902 -14.76650 -14.15563 -14.08224 -13.76050 -13.55369 -13.15911 -12.76161 -12.46924 -12.38996 -12.28749 -11.67942 -11.61954 -11.55153 -11.25055 -11.06044 -10.87075 -10.59165 -10.27163 -10.22589 -10.13703 -10.04134 -9.85879 -9.43130 -8.95468 -8.40934 -8.10643 -7.64648 -7.28737 -6.41432 -4.08460 2.21165 2.25202 3.40760 3.42830 3.57844 4.43994 4.60257 5.00205 5.27680 5.60249 5.62523 5.68175 5.76213 5.80926 5.90954 6.00482 6.08413 6.11785 6.17122 6.27987 6.34183 6.38793 6.42689 6.46611 6.47982 6.59688 6.67961 6.77698 6.83121 6.92728 6.99250 7.20163 7.24636 7.29224 7.53598 7.61662 7.75994 7.92785 8.04101 8.30135 8.55036 8.78957 9.55347 10.93552 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.010458 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.908303 B = 2676.685467 C = 3625.926911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.085 3.915 5 N -0.529 5.529 6 C 0.021 3.979 7 C 0.229 3.771 8 H 0.012 0.988 9 C -0.564 4.564 10 H 0.070 0.930 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 1.062 2.938 14 H -0.287 1.287 15 H -0.283 1.283 16 H -0.285 1.285 17 C -0.029 4.029 18 C -0.099 4.099 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.125 4.125 22 C -0.127 4.127 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.126 0.874 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.008 0.992 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.271 0.729 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 1.062 5.372 7.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.132 4.132 3 C -0.202 4.202 4 C -0.043 4.043 5 N -0.253 5.253 6 C -0.128 4.128 7 C 0.123 3.877 8 H 0.030 0.970 9 C -0.602 4.602 10 H 0.088 0.912 11 C -0.185 4.185 12 N -0.539 5.539 13 Si 0.890 3.110 14 H -0.214 1.214 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.030 4.030 18 C -0.117 4.117 19 C -0.151 4.151 20 C -0.170 4.170 21 C -0.143 4.143 22 C -0.146 4.146 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.484 1.185 3.704 5.936 hybrid contribution 0.255 -0.276 1.794 1.833 sum -4.230 0.908 5.498 6.996 Atomic orbital electron populations 1.21599 0.96082 1.02012 0.98636 1.21679 0.95688 0.93834 1.01990 1.21844 1.00431 0.97691 1.00205 1.21790 0.96358 0.89078 0.97047 1.62095 1.55605 1.01901 1.05692 1.22409 0.98435 1.00547 0.91387 1.18597 0.91049 0.85074 0.93010 0.97024 1.21797 1.02320 1.43926 0.92194 0.91232 1.25799 0.93458 0.94707 1.04501 1.70769 1.26411 1.34150 1.22555 0.83636 0.75914 0.76417 0.74993 1.21411 1.20906 1.21038 1.20558 0.92758 0.97736 0.91940 1.20911 0.96485 0.95008 0.99337 1.21028 0.98286 0.93701 1.02122 1.20822 0.93269 0.98352 1.04544 1.20929 0.95762 0.95937 1.01714 1.21010 0.99121 0.92945 1.01504 0.95123 0.94657 0.91261 0.85698 0.93500 0.93393 0.94244 0.93645 0.96041 0.97300 0.93074 0.91548 0.91745 0.86193 0.87470 0.87633 0.87517 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.69 37.16 0.32 -1.91 16 2 C -0.11 -2.18 2.44 -90.62 -0.22 -2.40 16 3 C -0.14 -2.36 9.19 37.16 0.34 -2.01 16 4 C 0.09 1.66 4.43 -3.82 -0.02 1.65 16 5 N -0.53 -10.84 3.45 -237.68 -0.82 -11.66 16 6 C 0.02 0.38 8.97 60.07 0.54 0.92 16 7 C 0.23 5.35 1.42 -70.02 -0.10 5.25 16 8 H 0.01 0.32 6.25 -51.93 -0.32 -0.01 16 9 C -0.56 -14.27 5.25 -34.44 -0.18 -14.45 16 10 H 0.07 1.78 6.33 -52.49 -0.33 1.45 16 11 C 0.02 0.56 5.45 -17.82 -0.10 0.47 16 12 N -0.90 -25.65 13.63 55.43 0.76 -24.89 16 13 Si 1.06 24.17 29.91 -169.99 -5.08 19.09 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.03 -0.64 3.47 -104.62 -0.36 -1.00 16 18 C -0.10 -2.04 7.87 -39.58 -0.31 -2.35 16 19 C -0.13 -2.43 10.05 -39.58 -0.40 -2.82 16 20 C -0.15 -2.68 10.05 -39.58 -0.40 -3.07 16 21 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.13 -2.73 9.22 -39.58 -0.36 -3.10 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.33 7.24 -51.93 -0.38 0.96 16 26 H 0.13 2.82 4.65 -51.93 -0.24 2.58 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 31 H 0.02 0.45 7.80 -51.93 -0.40 0.04 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.05 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.07 1.23 5.77 -51.93 -0.30 0.93 16 35 H 0.27 7.62 5.42 -40.82 -0.22 7.40 16 36 H 0.12 2.48 7.98 -52.49 -0.42 2.06 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.11 2.40 7.21 -52.49 -0.38 2.02 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -27.03 312.31 -8.50 -35.53 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.42 Total: 4.81 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -1.64 Total: -27.59 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.06 Total: -36.55 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.03 -8.50 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.853 kcal (2) G-P(sol) polarization free energy of solvation -27.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds