Wall clock time and date at job start Mon Mar 30 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47279 * 2 1 4 4 C 1.53000 * 109.46882 * 119.99566 * 2 1 3 5 5 N 1.46903 * 109.46964 * 60.14755 * 4 2 1 6 6 C 1.46905 * 110.99731 * 201.62507 * 5 4 2 7 7 C 1.46905 * 111.00158 * 77.67308 * 5 4 2 8 8 H 1.09003 * 109.46803 * 51.46481 * 7 5 4 9 9 C 1.50698 * 109.46960 * 291.46205 * 7 5 4 10 10 H 1.08002 * 120.00141 * 330.26720 * 9 7 5 11 11 C 1.37880 * 119.99926 * 150.26179 * 9 7 5 12 12 N 1.31516 * 120.00107 * 6.60232 * 11 9 7 13 13 Si 1.86801 * 119.99994 * 186.59570 * 11 9 7 14 14 H 1.48503 * 109.46932 * 270.00113 * 13 11 9 15 15 H 1.48497 * 109.47322 * 30.00563 * 13 11 9 16 16 H 1.48499 * 109.46800 * 150.00416 * 13 11 9 17 17 C 1.50698 * 109.46841 * 171.46226 * 7 5 4 18 18 C 1.38235 * 119.99891 * 48.55825 * 17 7 5 19 19 C 1.38242 * 119.99467 * 179.78720 * 18 17 7 20 20 C 1.38236 * 120.00248 * 0.43391 * 19 18 17 21 21 C 1.38244 * 119.99669 * 359.81790 * 20 19 18 22 22 C 1.38232 * 120.00159 * 359.97239 * 21 20 19 23 23 H 1.08999 * 109.47267 * 304.45648 * 1 2 3 24 24 H 1.09003 * 109.46934 * 64.45905 * 1 2 3 25 25 H 1.09001 * 109.47005 * 184.45663 * 1 2 3 26 26 H 1.08997 * 109.47256 * 240.00023 * 2 1 3 27 27 H 1.09000 * 109.47790 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46734 * 299.99940 * 3 2 1 29 29 H 1.09000 * 109.47622 * 59.99510 * 3 2 1 30 30 H 1.08996 * 109.47402 * 300.14416 * 4 2 1 31 31 H 1.08997 * 109.47104 * 180.14549 * 4 2 1 32 32 H 1.09000 * 109.47215 * 297.31859 * 6 5 4 33 33 H 1.09003 * 109.46955 * 57.32360 * 6 5 4 34 34 H 1.09003 * 109.46834 * 177.31928 * 6 5 4 35 35 H 0.97008 * 119.99586 * 355.08181 * 12 11 9 36 36 H 1.07986 * 120.00410 * 359.97438 * 18 17 7 37 37 H 1.08001 * 119.99555 * 180.27402 * 19 18 17 38 38 H 1.07996 * 119.99958 * 179.83993 * 20 19 18 39 39 H 1.07994 * 119.99455 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.99664 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5532 -2.1072 1.2476 6 6 1.5655 -2.6711 2.6040 7 6 2.3365 -2.9392 0.3244 8 1 3.3985 -2.8169 0.5373 9 6 2.0565 -2.5155 -1.0944 10 1 1.0941 -2.0995 -1.3538 11 6 3.0288 -2.6588 -2.0614 12 7 4.1515 -3.2824 -1.7777 13 14 2.7517 -1.9672 -3.7744 14 1 2.1044 -2.9978 -4.6254 15 1 1.8740 -0.7724 -3.6898 16 1 4.0564 -1.5819 -4.3696 17 6 1.9518 -4.3854 0.5021 18 6 0.6181 -4.7486 0.5200 19 6 0.2654 -6.0758 0.6785 20 6 1.2460 -7.0385 0.8282 21 6 2.5796 -6.6745 0.8154 22 6 2.9325 -5.3479 0.6525 23 1 -0.3634 0.5814 0.8473 24 1 -0.3633 0.4431 -0.9273 25 1 -0.3633 -1.0246 0.0799 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6746 -0.2088 2.1392 31 1 3.1300 -0.7189 1.2507 32 1 2.5899 -2.7027 2.9751 33 1 0.9597 -2.0481 3.2620 34 1 1.1560 -3.6811 2.5813 35 1 4.3258 -3.5787 -0.8706 36 1 -0.1481 -3.9960 0.4071 37 1 -0.7765 -6.3601 0.6881 38 1 0.9703 -8.0750 0.9546 39 1 3.3457 -7.4267 0.9319 40 1 3.9743 -5.0637 0.6422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:21 Heat of formation + Delta-G solvation = 6.088062 kcal Electronic energy + Delta-G solvation = -18979.299864 eV Core-core repulsion = 16371.998426 eV Total energy + Delta-G solvation = -2607.301438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53341 -38.59101 -35.55418 -34.65407 -31.83534 -31.60871 -28.79839 -27.78219 -27.40215 -25.44618 -23.55100 -23.08147 -21.62186 -20.52516 -18.88393 -17.58726 -16.53540 -16.43138 -15.79317 -15.69313 -15.53507 -15.10366 -14.70353 -14.38419 -14.04027 -13.93571 -13.83618 -13.27019 -13.09361 -13.01493 -12.84409 -12.64747 -12.58733 -12.26071 -11.95470 -11.77319 -11.73816 -11.57142 -11.41189 -11.04767 -10.85086 -10.34448 -9.65559 -9.29549 -9.01572 -8.47372 -6.14137 0.65371 0.70976 1.53527 1.60656 1.76788 2.57427 3.01528 3.29312 3.38441 4.10707 4.15835 4.24670 4.29905 4.37564 4.42051 4.45657 4.53628 4.60954 4.72569 4.78814 4.82790 4.86339 4.93726 4.97861 5.01587 5.11461 5.18600 5.27756 5.28558 5.34488 5.45411 5.71768 5.72639 5.75897 5.91889 5.96770 6.03210 6.16269 6.32221 6.54155 6.60407 6.78907 7.55844 8.86345 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.010458 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.908303 B = 2676.685467 C = 3625.926911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C -0.138 4.138 4 C 0.085 3.915 5 N -0.528 5.528 6 C 0.025 3.975 7 C 0.237 3.763 8 H -0.031 1.031 9 C -0.549 4.549 10 H 0.064 0.936 11 C -0.028 4.028 12 N -0.939 5.939 13 Si 1.099 2.901 14 H -0.282 1.282 15 H -0.262 1.262 16 H -0.290 1.290 17 C -0.051 4.051 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.142 4.142 21 C -0.127 4.127 22 C -0.152 4.152 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.072 0.928 31 H -0.005 1.005 32 H 0.000 1.000 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.259 0.741 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 0.749 5.995 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.196 4.196 4 C -0.043 4.043 5 N -0.251 5.251 6 C -0.124 4.124 7 C 0.130 3.870 8 H -0.013 1.013 9 C -0.587 4.587 10 H 0.082 0.918 11 C -0.227 4.227 12 N -0.578 5.578 13 Si 0.922 3.078 14 H -0.208 1.208 15 H -0.187 1.187 16 H -0.216 1.216 17 C -0.052 4.052 18 C -0.130 4.130 19 C -0.144 4.144 20 C -0.160 4.160 21 C -0.145 4.145 22 C -0.171 4.171 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.019 0.981 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.872 0.881 4.345 8.178 hybrid contribution 0.942 -0.219 1.720 1.974 sum -5.930 0.662 6.065 8.508 Atomic orbital electron populations 1.21491 0.94618 1.01254 1.00054 1.21562 0.96878 0.95144 0.99855 1.21772 0.99944 0.95961 1.01885 1.21866 0.94877 0.88950 0.98586 1.62081 1.54470 1.02076 1.06508 1.22431 0.98470 1.00981 0.90502 1.18365 0.88951 0.86827 0.92888 1.01315 1.21911 1.01476 1.42295 0.93054 0.91761 1.26895 0.93265 0.94879 1.07668 1.70861 1.27884 1.37011 1.22004 0.83174 0.75915 0.76795 0.71867 1.20820 1.18664 1.21628 1.20431 0.93928 0.96772 0.94040 1.20934 0.95307 0.96439 1.00274 1.21420 1.00391 0.92488 1.00128 1.21287 0.92223 1.00283 1.02181 1.21247 0.97525 0.95046 1.00661 1.21027 0.98071 0.94586 1.03395 0.92891 0.93844 0.93213 0.89536 0.94304 0.92294 0.91932 0.91007 0.98652 0.98096 0.90268 0.91781 0.93027 0.86708 0.83916 0.83528 0.85042 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.69 71.98 0.63 -3.31 16 2 C -0.12 -4.37 2.44 -10.79 -0.03 -4.40 16 3 C -0.14 -4.30 9.19 71.98 0.66 -3.64 16 4 C 0.09 3.33 4.43 86.30 0.38 3.71 16 5 N -0.53 -21.89 3.45 -905.89 -3.12 -25.01 16 6 C 0.02 0.89 8.97 127.69 1.15 2.03 16 7 C 0.24 11.56 1.42 43.42 0.06 11.62 16 8 H -0.03 -1.73 6.25 -2.39 -0.01 -1.75 16 9 C -0.55 -28.71 5.25 25.60 0.13 -28.57 16 10 H 0.06 3.37 6.33 -2.91 -0.02 3.35 16 11 C -0.03 -1.55 5.45 84.65 0.46 -1.08 16 12 N -0.94 -56.14 13.63 21.45 0.29 -55.85 16 13 Si 1.10 49.73 29.91 68.60 2.05 51.78 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 C -0.05 -2.30 3.47 -19.87 -0.07 -2.37 16 18 C -0.11 -4.48 7.87 22.27 0.18 -4.31 16 19 C -0.13 -4.22 10.05 22.27 0.22 -3.99 16 20 C -0.14 -4.51 10.05 22.27 0.22 -4.28 16 21 C -0.13 -4.61 10.05 22.27 0.22 -4.38 16 22 C -0.15 -6.73 9.22 22.27 0.21 -6.52 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.86 7.24 -2.39 -0.02 1.84 16 26 H 0.09 3.98 4.65 -2.39 -0.01 3.97 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 2.40 7.81 -2.39 -0.02 2.38 16 31 H 0.00 -0.21 7.80 -2.39 -0.02 -0.23 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.08 2.40 8.00 -2.39 -0.02 2.38 16 34 H 0.06 2.34 5.77 -2.39 -0.01 2.33 16 35 H 0.26 15.65 5.42 -92.70 -0.50 15.15 16 36 H 0.11 4.67 7.98 -2.92 -0.02 4.65 16 37 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 39 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 40 H 0.09 4.13 7.21 -2.91 -0.02 4.11 16 Total: -1.00 -61.07 312.31 4.91 -56.17 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 1.25 Total: 22.41 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 4.43 Total: -49.50 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -2.83 Total: -80.86 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.05 Total: 51.78 kcal Total: -61.07 4.91 -56.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.256 kcal (2) G-P(sol) polarization free energy of solvation -61.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds