Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46871 * 2 1 4 4 H 1.08998 * 109.47523 * 56.06900 * 3 2 1 5 5 C 1.53008 * 109.46759 * 176.06879 * 3 2 1 6 6 N 1.46902 * 109.47429 * 296.06043 * 3 2 1 7 7 C 1.46897 * 110.99880 * 320.98937 * 6 3 2 8 8 C 1.46904 * 110.99552 * 84.94042 * 6 3 2 9 9 H 1.09005 * 109.46843 * 297.67795 * 8 6 3 10 10 C 1.50699 * 109.47190 * 57.67265 * 8 6 3 11 11 H 1.07999 * 119.99640 * 32.76267 * 10 8 6 12 12 C 1.37872 * 120.00274 * 212.75598 * 10 8 6 13 13 N 1.31519 * 120.00078 * 4.72261 * 12 10 8 14 14 Si 1.86805 * 120.00263 * 184.71798 * 12 10 8 15 15 H 1.48505 * 109.46642 * 60.00539 * 14 12 10 16 16 H 1.48500 * 109.47140 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47018 * 300.00667 * 14 12 10 18 18 C 1.50694 * 109.47152 * 177.67526 * 8 6 3 19 19 C 1.38235 * 120.00115 * 313.77548 * 18 8 6 20 20 C 1.38232 * 119.99722 * 179.81132 * 19 18 8 21 21 C 1.38236 * 120.00610 * 0.39257 * 20 19 18 22 22 C 1.38234 * 119.99500 * 359.85675 * 21 20 19 23 23 C 1.38234 * 120.00338 * 359.95950 * 22 21 20 24 24 H 1.08998 * 109.47239 * 316.03399 * 1 2 3 25 25 H 1.08997 * 109.47200 * 76.03209 * 1 2 3 26 26 H 1.08997 * 109.47395 * 196.03359 * 1 2 3 27 27 H 1.08997 * 109.46887 * 239.99652 * 2 1 3 28 28 H 1.09005 * 109.46745 * 119.99891 * 2 1 3 29 29 H 1.08998 * 109.46924 * 303.71725 * 5 3 2 30 30 H 1.08997 * 109.47395 * 63.71993 * 5 3 2 31 31 H 1.09000 * 109.46724 * 183.72592 * 5 3 2 32 32 H 1.08999 * 109.47409 * 67.89220 * 7 6 3 33 33 H 1.09003 * 109.46878 * 187.88891 * 7 6 3 34 34 H 1.08994 * 109.47650 * 307.88992 * 7 6 3 35 35 H 0.96992 * 119.99767 * 179.97438 * 13 12 10 36 36 H 1.07998 * 119.99548 * 359.97438 * 19 18 8 37 37 H 1.08009 * 119.99673 * 180.22961 * 20 19 18 38 38 H 1.07993 * 120.00299 * 179.83627 * 21 20 19 39 39 H 1.08001 * 120.00033 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00352 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6202 1.9763 0.8526 5 6 3.5668 1.4436 0.0989 6 7 1.6295 2.1070 -1.2442 7 6 1.7316 1.1915 -2.3884 8 6 0.2706 2.6525 -1.1260 9 1 -0.4341 1.8385 -0.9557 10 6 0.2149 3.6156 0.0318 11 1 1.0818 4.2085 0.2832 12 6 -0.9429 3.7399 0.7700 13 7 -1.9675 2.9529 0.5237 14 14 -1.0564 5.0259 2.1201 15 1 -0.8572 6.3764 1.5352 16 1 -2.3952 4.9563 2.7588 17 1 -0.0072 4.7680 3.1388 18 6 -0.0932 3.3743 -2.3978 19 6 0.8044 4.2530 -2.9749 20 6 0.4721 4.9121 -4.1437 21 6 -0.7610 4.6989 -4.7310 22 6 -1.6606 3.8241 -4.1510 23 6 -1.3269 3.1620 -2.9843 24 1 -0.3633 0.7396 0.7134 25 1 -0.3633 0.2480 -0.9972 26 1 -0.3634 -0.9876 0.2838 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8737 0.8931 0.9882 30 1 3.9886 0.9679 -0.7864 31 1 3.9258 2.4706 0.1656 32 1 0.9852 0.4031 -2.2907 33 1 1.5580 1.7436 -3.3121 34 1 2.7271 0.7484 -2.4116 35 1 -2.7819 3.0401 1.0433 36 1 1.7663 4.4225 -2.5141 37 1 1.1749 5.5959 -4.5966 38 1 -1.0216 5.2158 -5.6426 39 1 -2.6242 3.6577 -4.6096 40 1 -2.0296 2.4783 -2.5315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = 28.451785 kcal Electronic energy + Delta-G solvation = -19124.960664 eV Core-core repulsion = 16518.628990 eV Total energy + Delta-G solvation = -2606.331674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.89100 -37.36036 -33.24708 -31.74643 -30.08556 -29.81989 -29.09812 -27.23077 -24.31013 -23.32330 -22.16325 -21.55838 -19.71440 -18.66414 -16.48076 -15.85016 -15.63687 -14.57690 -14.38625 -13.93252 -13.69722 -13.46028 -12.96092 -12.48320 -12.30722 -12.27847 -11.96111 -11.73450 -11.46268 -11.41888 -10.99690 -10.93311 -10.84836 -10.66860 -10.45697 -10.27564 -10.14629 -9.99907 -9.63675 -9.55776 -9.29048 -8.53989 -7.97492 -7.59198 -6.96466 -6.09894 -4.11567 2.36035 2.39537 3.29059 3.33600 3.37515 4.36144 4.75040 5.13248 5.25138 5.58161 5.70976 5.79372 5.84574 5.89182 5.91536 6.07787 6.18114 6.25977 6.31812 6.35798 6.40231 6.46707 6.50921 6.59643 6.61319 6.64278 6.76306 6.90796 6.97305 6.99851 7.15826 7.29246 7.38084 7.44341 7.52953 7.80894 7.85360 7.91658 8.14591 8.29686 8.61365 9.00989 9.51048 10.95482 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.012086 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.596224 B = 2316.153390 C = 3386.946618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.100 0.900 5 C -0.135 4.135 6 N -0.530 5.530 7 C 0.021 3.979 8 C 0.211 3.789 9 H 0.070 0.930 10 C -0.494 4.494 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.884 5.884 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.022 4.022 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.154 4.154 22 C -0.132 4.132 23 C -0.118 4.118 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -2.810 -4.265 6.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.025 4.025 4 H 0.118 0.882 5 C -0.193 4.193 6 N -0.253 5.253 7 C -0.128 4.128 8 C 0.106 3.894 9 H 0.087 0.913 10 C -0.532 4.532 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.521 5.521 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.023 4.023 19 C -0.122 4.122 20 C -0.155 4.155 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.136 4.136 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.447 -2.456 -4.274 6.639 hybrid contribution -0.826 0.185 0.775 1.148 sum 3.621 -2.270 -3.499 5.523 Atomic orbital electron populations 1.22057 0.95004 1.00614 1.03346 1.22204 0.97069 0.98925 1.00487 1.21658 0.93849 0.91736 0.95272 0.88178 1.21772 0.96608 1.01225 0.99676 1.62238 1.28687 1.32685 1.01719 1.22383 0.99213 0.95658 0.95508 1.19006 0.85607 0.95277 0.89513 0.91308 1.20891 0.98199 1.22609 1.11541 0.92048 1.24939 0.95920 0.95620 0.97043 1.69876 1.04198 1.37149 1.40862 0.86666 0.77087 0.82456 0.81909 1.20193 1.21384 1.20185 1.20579 0.92521 0.95131 0.94048 1.20990 1.00073 0.96355 0.94757 1.21006 0.96602 1.00664 0.97255 1.20788 0.95137 1.00938 1.00415 1.20950 0.98654 0.98428 0.96986 1.21077 0.97166 1.00580 0.94807 0.89805 0.92393 0.95060 0.92883 0.93204 0.93768 0.93872 0.92626 0.96063 0.92628 0.93325 0.92729 0.86345 0.87787 0.87934 0.87770 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.09 37.16 0.30 -2.68 16 2 C -0.15 -2.60 4.88 -26.73 -0.13 -2.73 16 3 C 0.08 1.60 2.35 -67.71 -0.16 1.44 16 4 H 0.10 2.20 6.33 -51.93 -0.33 1.88 16 5 C -0.13 -2.19 9.40 37.16 0.35 -1.84 16 6 N -0.53 -10.77 3.98 -229.69 -0.91 -11.68 16 7 C 0.02 0.39 7.71 60.06 0.46 0.85 16 8 C 0.21 4.86 1.33 -70.02 -0.09 4.77 16 9 H 0.07 1.68 3.13 -51.93 -0.16 1.52 16 10 C -0.49 -12.58 6.63 -34.44 -0.23 -12.80 16 11 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 12 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 13 N -0.88 -23.33 12.76 55.43 0.71 -22.62 16 14 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.02 -0.48 3.66 -104.62 -0.38 -0.87 16 19 C -0.10 -2.16 8.57 -39.58 -0.34 -2.50 16 20 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 21 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 22 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 23 C -0.12 -2.56 9.67 -39.58 -0.38 -2.94 16 24 H 0.08 1.89 7.54 -51.93 -0.39 1.49 16 25 H 0.06 1.20 4.81 -51.93 -0.25 0.95 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.88 6.18 -51.93 -0.32 0.56 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.66 7.03 -51.93 -0.36 0.29 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.39 5.21 -51.93 -0.27 0.12 16 33 H 0.05 1.04 6.70 -51.93 -0.35 0.69 16 34 H 0.05 0.80 6.77 -51.93 -0.35 0.45 16 35 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.12 2.49 7.91 -52.49 -0.42 2.08 16 37 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.12 2.60 7.99 -52.49 -0.42 2.18 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -25.71 307.94 -8.61 -34.32 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.13 Total: 6.40 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -1.89 Total: -26.70 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.21 Total: -34.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.71 -8.61 -34.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.774 kcal (2) G-P(sol) polarization free energy of solvation -25.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds