Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47043 * 2 1 4 4 H 1.08999 * 109.47612 * 304.99932 * 3 2 1 5 5 C 1.53004 * 109.47518 * 184.99922 * 3 2 1 6 6 N 1.46907 * 109.47138 * 64.99776 * 3 2 1 7 7 C 1.46897 * 110.99695 * 66.04979 * 6 3 2 8 8 C 1.46901 * 110.99779 * 190.00104 * 6 3 2 9 9 H 1.08997 * 109.47263 * 299.99837 * 8 6 3 10 10 C 1.50702 * 109.47203 * 60.00509 * 8 6 3 11 11 H 1.08009 * 119.99581 * 234.30147 * 10 8 6 12 12 C 1.37873 * 120.00324 * 54.57150 * 10 8 6 13 13 N 1.31512 * 119.99870 * 350.02142 * 12 10 8 14 14 Si 1.86797 * 120.00012 * 170.02385 * 12 10 8 15 15 H 1.48500 * 109.47207 * 89.99985 * 14 12 10 16 16 H 1.48499 * 109.47164 * 210.00159 * 14 12 10 17 17 H 1.48508 * 109.46934 * 329.99957 * 14 12 10 18 18 C 1.50709 * 109.46796 * 179.97438 * 8 6 3 19 19 C 1.38237 * 119.99635 * 145.39458 * 18 8 6 20 20 C 1.38234 * 119.99606 * 179.79073 * 19 18 8 21 21 C 1.38241 * 119.99854 * 0.43812 * 20 19 18 22 22 C 1.38231 * 120.00315 * 359.81186 * 21 20 19 23 23 C 1.38233 * 119.99795 * 325.66657 * 18 8 6 24 24 H 1.09004 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47634 * 300.00300 * 1 2 3 26 26 H 1.09001 * 109.47207 * 60.00625 * 1 2 3 27 27 H 1.08999 * 109.47276 * 240.00106 * 2 1 3 28 28 H 1.08998 * 109.47270 * 119.99904 * 2 1 3 29 29 H 1.09000 * 109.46870 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.46600 * 300.00043 * 5 3 2 31 31 H 1.08994 * 109.46951 * 60.00146 * 5 3 2 32 32 H 1.09004 * 109.46613 * 183.95422 * 7 6 3 33 33 H 1.08998 * 109.46862 * 303.94898 * 7 6 3 34 34 H 1.08993 * 109.47286 * 63.95501 * 7 6 3 35 35 H 0.97006 * 119.99967 * 179.97438 * 13 12 10 36 36 H 1.07995 * 120.00315 * 359.97438 * 19 18 8 37 37 H 1.07999 * 119.99964 * 180.27340 * 20 19 18 38 38 H 1.07998 * 119.99462 * 179.83825 * 21 20 19 39 39 H 1.07991 * 120.00533 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.00357 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6512 2.0993 1.2553 7 6 2.3340 1.4873 2.4029 8 6 1.9123 3.5437 1.1964 9 1 2.9755 3.7142 1.0274 10 6 1.1203 4.1517 0.0675 11 1 1.6212 4.7368 -0.6897 12 6 -0.2444 3.9659 0.0045 13 7 -0.8284 3.1039 0.8079 14 14 -1.2638 4.9384 -1.2220 15 1 -1.3524 4.1858 -2.4991 16 1 -2.6285 5.1482 -0.6754 17 1 -0.6209 6.2546 -1.4666 18 6 1.5013 4.1819 2.4983 19 6 2.2184 5.2519 3.0002 20 6 1.8389 5.8400 4.1922 21 6 0.7477 5.3524 4.8869 22 6 0.0338 4.2791 4.3877 23 6 0.4108 3.6937 3.1934 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9280 2.4721 -0.1252 30 1 3.9993 0.9054 0.7162 31 1 3.8531 0.9572 -1.0570 32 1 1.9758 1.9451 3.3251 33 1 2.1238 0.4179 2.4227 34 1 3.4087 1.6448 2.3127 35 1 -1.7887 2.9734 0.7638 36 1 3.0733 5.6302 2.4595 37 1 2.3964 6.6788 4.5821 38 1 0.4528 5.8103 5.8195 39 1 -0.8189 3.8984 4.9301 40 1 -0.1471 2.8552 2.8033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = 35.343773 kcal Electronic energy + Delta-G solvation = -19321.249856 eV Core-core repulsion = 16715.217041 eV Total energy + Delta-G solvation = -2606.032815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.68310 -37.02514 -33.34460 -31.73340 -30.01901 -29.63620 -28.37838 -27.14615 -24.18954 -23.27147 -22.05381 -21.37683 -19.81630 -18.45245 -16.35005 -15.67514 -15.10006 -14.67626 -14.22643 -13.68117 -13.41340 -13.22737 -12.83929 -12.68112 -12.46057 -12.17947 -11.82531 -11.61935 -11.58889 -11.12367 -11.03365 -10.89016 -10.61203 -10.49736 -10.24178 -10.22130 -9.98961 -9.84487 -9.65138 -9.30075 -9.13020 -8.40914 -7.81221 -7.38620 -6.67940 -5.86230 -4.03758 2.47587 2.57944 3.30661 3.38779 3.43202 4.44271 4.94257 5.19167 5.42402 5.70042 5.80395 5.92870 5.98402 6.01505 6.12767 6.13649 6.29649 6.32903 6.39519 6.44606 6.50746 6.58855 6.63048 6.73086 6.80822 6.84608 6.91236 6.96319 7.10079 7.12861 7.29549 7.38227 7.51918 7.53747 7.70640 7.87191 8.00651 8.17515 8.29214 8.54563 8.74414 9.06311 9.61079 11.05764 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.011787 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.767267 B = 2375.018442 C = 3219.333729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C 0.097 3.903 4 H 0.094 0.906 5 C -0.184 4.184 6 N -0.479 5.479 7 C 0.014 3.986 8 C 0.246 3.754 9 H -0.002 1.002 10 C -0.528 4.528 11 H 0.054 0.946 12 C 0.092 3.908 13 N -0.818 5.818 14 Si 0.874 3.126 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.028 4.028 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.072 4.072 24 H 0.020 0.980 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.003 0.997 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -2.802 2.707 5.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C -0.012 4.012 4 H 0.112 0.888 5 C -0.243 4.243 6 N -0.201 5.201 7 C -0.135 4.135 8 C 0.141 3.859 9 H 0.016 0.984 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.116 4.116 13 N -0.451 5.451 14 Si 0.701 3.299 15 H -0.209 1.209 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.030 4.030 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.172 4.172 22 C -0.167 4.167 23 C -0.090 4.090 24 H 0.039 0.961 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.592 -2.961 2.826 4.845 hybrid contribution 0.244 0.932 -0.742 1.216 sum 2.836 -2.029 2.084 4.062 Atomic orbital electron populations 1.21580 0.94972 0.98125 1.04324 1.21516 0.97213 0.96540 0.99262 1.21442 0.90393 0.93814 0.95573 0.88759 1.22502 1.00500 1.01120 1.00150 1.62294 1.54782 1.03463 0.99594 1.22515 0.95054 0.99103 0.96825 1.18250 0.92497 0.84607 0.90596 0.98427 1.20763 0.92456 1.34237 1.09119 0.92734 1.24808 0.97558 0.94003 0.95252 1.70010 1.09334 1.30127 1.35605 0.86913 0.80049 0.81069 0.81827 1.20854 1.21245 1.20188 1.20351 0.94105 0.94356 0.94153 1.20905 1.00591 0.98089 0.96111 1.20758 0.98336 1.00331 0.96610 1.20794 0.97706 0.98783 0.99883 1.21189 0.99880 0.97671 0.97975 1.21885 0.95006 1.00892 0.91205 0.96106 0.89339 0.93743 0.94096 0.93426 0.92936 0.93656 0.93841 0.92307 0.93228 0.97914 0.93527 0.87985 0.88164 0.88356 0.88088 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.80 37.15 0.36 -2.12 16 2 C -0.11 -1.92 5.33 -26.74 -0.14 -2.06 16 3 C 0.10 1.93 2.15 -67.71 -0.15 1.79 16 4 H 0.09 2.16 6.76 -51.93 -0.35 1.80 16 5 C -0.18 -3.28 8.44 37.16 0.31 -2.96 16 6 N -0.48 -10.15 2.00 -229.69 -0.46 -10.61 16 7 C 0.01 0.27 8.20 60.06 0.49 0.76 16 8 C 0.25 5.72 1.75 -70.01 -0.12 5.60 16 9 H 0.00 -0.05 6.53 -51.93 -0.34 -0.38 16 10 C -0.53 -13.38 7.18 -34.44 -0.25 -13.62 16 11 H 0.05 1.42 7.83 -52.48 -0.41 1.01 16 12 C 0.09 2.30 5.17 -17.82 -0.09 2.21 16 13 N -0.82 -20.13 8.62 55.43 0.48 -19.65 16 14 Si 0.87 20.23 29.55 -169.99 -5.02 15.21 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.03 -0.65 3.83 -104.62 -0.40 -1.05 16 19 C -0.14 -2.93 9.68 -39.58 -0.38 -3.31 16 20 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 21 C -0.15 -2.90 10.05 -39.58 -0.40 -3.30 16 22 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 23 C -0.07 -1.60 6.49 -39.58 -0.26 -1.86 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 1.86 7.25 -51.93 -0.38 1.48 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.82 6.26 -51.93 -0.33 0.49 16 29 H 0.05 0.99 6.69 -51.93 -0.35 0.64 16 30 H 0.04 0.77 6.42 -51.93 -0.33 0.43 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.18 5.84 -51.93 -0.30 0.87 16 33 H 0.05 0.89 6.21 -51.93 -0.32 0.57 16 34 H 0.00 0.05 6.46 -51.93 -0.34 -0.29 16 35 H 0.25 6.19 8.31 -40.82 -0.34 5.85 16 36 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.17 3.93 5.55 -52.48 -0.29 3.64 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -24.63 304.57 -8.48 -33.12 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.25 Total: 3.81 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -1.81 Total: -26.46 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.02 Total: -30.26 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -24.63 -8.48 -33.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.460 kcal (2) G-P(sol) polarization free energy of solvation -24.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds