Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47043 * 2 1 4 4 H 1.08999 * 109.47612 * 304.99932 * 3 2 1 5 5 C 1.53004 * 109.47518 * 184.99922 * 3 2 1 6 6 N 1.46907 * 109.47138 * 64.99776 * 3 2 1 7 7 C 1.46897 * 110.99695 * 66.04979 * 6 3 2 8 8 C 1.46901 * 110.99779 * 190.00104 * 6 3 2 9 9 H 1.08997 * 109.47263 * 299.99837 * 8 6 3 10 10 C 1.50702 * 109.47203 * 60.00509 * 8 6 3 11 11 H 1.08009 * 119.99581 * 234.30147 * 10 8 6 12 12 C 1.37873 * 120.00324 * 54.57150 * 10 8 6 13 13 N 1.31512 * 119.99870 * 350.02142 * 12 10 8 14 14 Si 1.86797 * 120.00012 * 170.02385 * 12 10 8 15 15 H 1.48500 * 109.47207 * 89.99985 * 14 12 10 16 16 H 1.48499 * 109.47164 * 210.00159 * 14 12 10 17 17 H 1.48508 * 109.46934 * 329.99957 * 14 12 10 18 18 C 1.50709 * 109.46796 * 179.97438 * 8 6 3 19 19 C 1.38237 * 119.99635 * 145.39458 * 18 8 6 20 20 C 1.38234 * 119.99606 * 179.79073 * 19 18 8 21 21 C 1.38241 * 119.99854 * 0.43812 * 20 19 18 22 22 C 1.38231 * 120.00315 * 359.81186 * 21 20 19 23 23 C 1.38233 * 119.99795 * 325.66657 * 18 8 6 24 24 H 1.09004 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47634 * 300.00300 * 1 2 3 26 26 H 1.09001 * 109.47207 * 60.00625 * 1 2 3 27 27 H 1.08999 * 109.47276 * 240.00106 * 2 1 3 28 28 H 1.08998 * 109.47270 * 119.99904 * 2 1 3 29 29 H 1.09000 * 109.46870 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.46600 * 300.00043 * 5 3 2 31 31 H 1.08994 * 109.46951 * 60.00146 * 5 3 2 32 32 H 1.09004 * 109.46613 * 183.95422 * 7 6 3 33 33 H 1.08998 * 109.46862 * 303.94898 * 7 6 3 34 34 H 1.08993 * 109.47286 * 63.95501 * 7 6 3 35 35 H 0.97006 * 119.99967 * 179.97438 * 13 12 10 36 36 H 1.07995 * 120.00315 * 359.97438 * 19 18 8 37 37 H 1.07999 * 119.99964 * 180.27340 * 20 19 18 38 38 H 1.07998 * 119.99462 * 179.83825 * 21 20 19 39 39 H 1.07991 * 120.00533 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.00357 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6512 2.0993 1.2553 7 6 2.3340 1.4873 2.4029 8 6 1.9123 3.5437 1.1964 9 1 2.9755 3.7142 1.0274 10 6 1.1203 4.1517 0.0675 11 1 1.6212 4.7368 -0.6897 12 6 -0.2444 3.9659 0.0045 13 7 -0.8284 3.1039 0.8079 14 14 -1.2638 4.9384 -1.2220 15 1 -1.3524 4.1858 -2.4991 16 1 -2.6285 5.1482 -0.6754 17 1 -0.6209 6.2546 -1.4666 18 6 1.5013 4.1819 2.4983 19 6 2.2184 5.2519 3.0002 20 6 1.8389 5.8400 4.1922 21 6 0.7477 5.3524 4.8869 22 6 0.0338 4.2791 4.3877 23 6 0.4108 3.6937 3.1934 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9280 2.4721 -0.1252 30 1 3.9993 0.9054 0.7162 31 1 3.8531 0.9572 -1.0570 32 1 1.9758 1.9451 3.3251 33 1 2.1238 0.4179 2.4227 34 1 3.4087 1.6448 2.3127 35 1 -1.7887 2.9734 0.7638 36 1 3.0733 5.6302 2.4595 37 1 2.3964 6.6788 4.5821 38 1 0.4528 5.8103 5.8195 39 1 -0.8189 3.8984 4.9301 40 1 -0.1471 2.8552 2.8033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = 25.742412 kcal Electronic energy + Delta-G solvation = -19321.666202 eV Core-core repulsion = 16715.217041 eV Total energy + Delta-G solvation = -2606.449161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31668 -38.60260 -35.06629 -33.48152 -31.61509 -31.21461 -29.92071 -28.89830 -25.86109 -24.94593 -23.62167 -22.97040 -21.45050 -20.09174 -18.13912 -17.26591 -16.80743 -16.48866 -15.81521 -15.36486 -14.99529 -14.80003 -14.39105 -14.27526 -14.06100 -13.76468 -13.49778 -13.32362 -13.14545 -12.82598 -12.62930 -12.62475 -12.40631 -12.09703 -11.90279 -11.76911 -11.65210 -11.40161 -11.35667 -10.89413 -10.87542 -10.32739 -9.41645 -9.03907 -8.33834 -7.75538 -5.98720 0.86315 0.99419 1.42220 1.47553 1.52814 2.52426 3.26243 3.41095 3.72182 4.19431 4.36538 4.39478 4.46893 4.54580 4.62170 4.65989 4.71858 4.79885 4.84977 4.91527 4.99434 5.05413 5.10405 5.11901 5.26272 5.31048 5.32605 5.37362 5.52825 5.55099 5.68961 5.78755 5.83343 5.92397 5.98185 6.11114 6.30267 6.42036 6.60968 6.71687 7.08244 7.25127 7.66082 9.11343 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.011787 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.767267 B = 2375.018442 C = 3219.333729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.094 3.906 4 H 0.059 0.941 5 C -0.174 4.174 6 N -0.485 5.485 7 C 0.021 3.979 8 C 0.252 3.748 9 H -0.019 1.019 10 C -0.547 4.547 11 H 0.034 0.966 12 C 0.068 3.932 13 N -0.816 5.816 14 Si 0.914 3.086 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.050 4.050 19 C -0.156 4.156 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.086 4.086 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.006 0.994 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -3.157 3.961 6.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.138 4.138 3 C -0.015 4.015 4 H 0.077 0.923 5 C -0.233 4.233 6 N -0.208 5.208 7 C -0.127 4.127 8 C 0.145 3.855 9 H -0.001 1.001 10 C -0.585 4.585 11 H 0.052 0.948 12 C -0.140 4.140 13 N -0.448 5.448 14 Si 0.742 3.258 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.051 4.051 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.166 4.166 22 C -0.173 4.173 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.721 -3.326 4.081 5.926 hybrid contribution 0.222 1.059 -1.095 1.540 sum 2.943 -2.267 2.985 4.766 Atomic orbital electron populations 1.21453 0.95694 0.98954 1.02040 1.21469 0.96436 0.95150 1.00784 1.21413 0.91645 0.94576 0.93841 0.92289 1.22376 0.98840 1.00377 1.01688 1.62171 1.55420 1.02548 1.00623 1.22452 0.94972 0.99650 0.95661 1.18091 0.91060 0.85825 0.90529 1.00127 1.20805 0.93072 1.34781 1.09828 0.94788 1.25118 0.97939 0.94634 0.96295 1.70109 1.09010 1.30011 1.35675 0.86302 0.78969 0.79783 0.80778 1.20790 1.21187 1.21152 1.20367 0.95021 0.95320 0.94358 1.21110 1.00938 0.98104 0.97299 1.21128 0.98383 1.00640 0.95516 1.21189 0.96781 0.97823 1.00828 1.21448 1.00587 0.97988 0.97296 1.21705 0.95228 1.01041 0.92461 0.93670 0.91845 0.95704 0.92059 0.92192 0.94797 0.92446 0.91895 0.93220 0.91664 0.97531 0.93832 0.87726 0.84948 0.84799 0.86171 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.80 71.98 0.71 -3.85 16 2 C -0.10 -3.44 5.33 30.59 0.16 -3.28 16 3 C 0.09 3.76 2.15 44.91 0.10 3.86 16 4 H 0.06 2.78 6.76 -2.39 -0.02 2.76 16 5 C -0.17 -6.09 8.44 71.98 0.61 -5.48 16 6 N -0.49 -20.78 2.00 -880.59 -1.76 -22.54 16 7 C 0.02 0.81 8.20 127.69 1.05 1.85 16 8 C 0.25 11.99 1.75 43.43 0.08 12.07 16 9 H -0.02 -0.93 6.53 -2.39 -0.02 -0.94 16 10 C -0.55 -28.68 7.18 25.60 0.18 -28.50 16 11 H 0.03 1.86 7.83 -2.91 -0.02 1.84 16 12 C 0.07 3.48 5.17 84.65 0.44 3.91 16 13 N -0.82 -40.83 8.62 21.45 0.18 -40.64 16 14 Si 0.91 42.23 29.55 68.60 2.03 44.25 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 18 C -0.05 -2.27 3.83 -19.86 -0.08 -2.35 16 19 C -0.16 -6.51 9.68 22.27 0.22 -6.29 16 20 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 21 C -0.15 -5.14 10.05 22.27 0.22 -4.92 16 22 C -0.16 -5.99 10.05 22.27 0.22 -5.77 16 23 C -0.09 -3.83 6.49 22.27 0.14 -3.68 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 2.66 7.25 -2.39 -0.02 2.64 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.91 6.26 -2.39 -0.01 1.90 16 29 H 0.03 1.29 6.69 -2.39 -0.02 1.27 16 30 H 0.06 1.85 6.42 -2.39 -0.02 1.84 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.98 5.84 -2.38 -0.01 1.96 16 33 H 0.06 2.25 6.21 -2.39 -0.01 2.23 16 34 H 0.01 0.24 6.46 -2.39 -0.02 0.22 16 35 H 0.25 12.41 8.31 -92.70 -0.77 11.64 16 36 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 39 H 0.12 4.09 8.06 -2.92 -0.02 4.07 16 40 H 0.14 7.00 5.55 -2.91 -0.02 6.98 16 Total: -1.00 -53.12 304.57 5.73 -47.40 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.00 Total: 18.69 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 4.27 Total: -47.16 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -1.57 Total: -63.18 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -53.12 5.73 -47.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.140 kcal (2) G-P(sol) polarization free energy of solvation -53.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds