Wall clock time and date at job start Mon Mar 30 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47331 * 2 1 4 4 C 1.53003 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46785 * 180.02562 * 4 3 2 6 6 C 1.46904 * 111.00271 * 293.95415 * 5 4 3 7 7 C 1.46900 * 110.99949 * 170.00381 * 5 4 3 8 8 C 1.50697 * 109.47214 * 189.99848 * 7 5 4 9 9 C 1.38656 * 119.87733 * 270.24664 * 8 7 5 10 10 C 1.38611 * 120.50290 * 180.29866 * 9 8 7 11 11 C 1.37646 * 120.24720 * 359.45638 * 10 9 8 12 12 C 1.40700 * 119.74049 * 0.26612 * 11 10 9 13 13 C 1.41394 * 120.23887 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99918 * 204.39256 * 13 12 11 15 15 C 1.39939 * 120.00458 * 24.38628 * 13 12 11 16 16 N 1.30826 * 119.99815 * 17.86380 * 15 13 12 17 17 Si 1.86807 * 120.00442 * 197.86044 * 15 13 12 18 18 H 1.48504 * 109.46582 * 94.69503 * 17 15 13 19 19 H 1.48499 * 109.47234 * 214.69507 * 17 15 13 20 20 H 1.48502 * 109.46792 * 334.69880 * 17 15 13 21 21 C 1.37595 * 119.87433 * 90.00220 * 8 7 5 22 22 H 1.08997 * 109.47037 * 299.99624 * 1 2 3 23 23 H 1.09000 * 109.46578 * 59.99917 * 1 2 3 24 24 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47207 * 239.99533 * 2 1 3 26 26 H 1.09004 * 109.47036 * 120.00249 * 2 1 3 27 27 H 1.09009 * 109.46970 * 59.99902 * 3 2 1 28 28 H 1.08995 * 109.47132 * 300.00300 * 3 2 1 29 29 H 1.08997 * 109.46866 * 60.00604 * 4 3 2 30 30 H 1.09000 * 109.46951 * 300.00188 * 4 3 2 31 31 H 1.09001 * 109.46837 * 296.05401 * 6 5 4 32 32 H 1.08999 * 109.46831 * 56.04853 * 6 5 4 33 33 H 1.08994 * 109.47376 * 176.05042 * 6 5 4 34 34 H 1.09001 * 109.46944 * 69.99817 * 7 5 4 35 35 H 1.09007 * 109.47049 * 310.00032 * 7 5 4 36 36 H 1.08005 * 119.75084 * 0.05290 * 9 8 7 37 37 H 1.07994 * 119.87907 * 179.72408 * 10 9 8 38 38 H 1.07991 * 120.12819 * 180.25140 * 11 10 9 39 39 H 0.97002 * 120.00124 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.13108 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.7108 3.5098 -1.2520 7 6 5.5085 2.8735 0.2399 8 6 5.9333 4.2996 0.4779 9 6 6.3129 5.0950 -0.5926 10 6 6.7118 6.4066 -0.3879 11 6 6.7245 6.9373 0.8820 12 6 6.3359 6.1412 1.9751 13 6 6.3455 6.6755 3.2842 14 1 6.4389 6.0173 4.1354 15 6 6.2340 8.0570 3.4770 16 7 5.7780 8.8171 2.5147 17 14 6.7364 8.8161 5.1083 18 1 8.1401 9.2927 5.0210 19 1 5.8431 9.9614 5.4173 20 1 6.6254 7.7975 6.1832 21 6 5.9382 4.8091 1.7560 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9285 -0.8891 30 1 3.9330 0.9287 0.8908 31 1 4.2178 3.0220 -2.0846 32 1 2.6326 3.4608 -1.4043 33 1 4.0230 4.5526 -1.1970 34 1 6.0328 2.4785 -0.6302 35 1 5.7519 2.2710 1.1152 36 1 6.3014 4.6882 -1.5931 37 1 7.0097 7.0157 -1.2285 38 1 7.0318 7.9606 1.0388 39 1 5.7004 9.7747 2.6485 40 1 5.6380 4.1893 2.5879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057661339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:35 Heat of formation + Delta-G solvation = -0.278736 kcal Electronic energy + Delta-G solvation = -17488.626133 eV Core-core repulsion = 14881.048610 eV Total energy + Delta-G solvation = -2607.577523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.30764 -36.88236 -34.62789 -33.46230 -30.49517 -29.77867 -28.46432 -26.55099 -25.23372 -24.02925 -21.62160 -20.69389 -20.49626 -19.76889 -16.87975 -15.76872 -15.31092 -15.21379 -14.67675 -14.50970 -14.33651 -13.53808 -13.35042 -13.13113 -12.72451 -12.46900 -12.29051 -11.82571 -11.61375 -11.40594 -11.30036 -11.20271 -11.06059 -10.96187 -10.78122 -10.76298 -10.47465 -10.43683 -10.30358 -9.52232 -9.31542 -9.08557 -7.90987 -7.39058 -7.20463 -6.69258 -4.28488 2.82178 3.01038 3.10928 3.15028 3.26180 3.98261 4.33572 4.72859 4.90169 4.99698 5.11082 5.32478 5.53218 5.57920 5.67989 5.74842 5.75985 5.81091 5.84437 5.93564 5.96372 6.05812 6.06830 6.19056 6.29197 6.37721 6.44951 6.51523 6.54505 7.02788 7.12244 7.30348 7.38038 7.50305 7.51709 7.68740 7.98591 8.11984 8.16839 8.36270 8.70963 8.96667 9.04973 10.25808 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.004557 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.687327 B = 6142.868785 C = 6725.994634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.117 4.117 4 C 0.054 3.946 5 N -0.533 5.533 6 C 0.024 3.976 7 C 0.105 3.895 8 C -0.061 4.061 9 C -0.232 4.232 10 C -0.108 4.108 11 C -0.164 4.164 12 C 0.107 3.893 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.796 5.796 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.196 4.196 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 -10.483 -4.251 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.074 4.074 5 N -0.256 5.256 6 C -0.124 4.124 7 C -0.022 4.022 8 C -0.062 4.062 9 C -0.252 4.252 10 C -0.126 4.126 11 C -0.184 4.184 12 C 0.105 3.895 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.421 5.421 17 Si 0.731 3.269 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.217 4.217 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.331 -9.997 -3.911 11.986 hybrid contribution 0.531 0.080 -0.031 0.538 sum -4.800 -9.917 -3.943 11.702 Atomic orbital electron populations 1.21760 0.95954 1.01236 1.01912 1.21497 0.95783 0.97129 1.01713 1.21638 0.94938 0.96094 1.02838 1.22134 0.95358 0.89748 1.00122 1.61977 1.14414 1.14307 1.34943 1.22464 1.00077 1.00908 0.88995 1.20982 0.86201 0.95795 0.99209 1.19051 0.99950 0.93154 0.94018 1.20170 1.13818 0.95366 0.95881 1.20633 1.00931 0.94679 0.96400 1.21320 1.04725 1.00612 0.91711 1.17601 0.87753 0.90763 0.93358 1.19569 1.44791 0.91762 0.93298 0.90546 1.25881 0.92362 0.97490 0.98347 1.69839 1.32100 1.06571 1.33616 0.86337 0.79262 0.79013 0.82299 1.19444 1.20368 1.18611 1.20798 1.09075 0.97220 0.94558 0.92612 0.92874 0.93052 0.92430 0.92064 0.91013 0.92037 0.95672 0.91193 0.96636 0.92142 0.89921 0.95515 0.91225 0.90064 0.89669 0.86597 0.91043 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.12 -1.42 5.14 -26.73 -0.14 -1.56 16 4 C 0.05 0.75 4.96 -3.82 -0.02 0.73 16 5 N -0.53 -9.18 4.75 -244.37 -1.16 -10.34 16 6 C 0.02 0.39 8.92 60.07 0.54 0.92 16 7 C 0.10 1.94 5.11 -4.98 -0.03 1.91 16 8 C -0.06 -1.37 4.88 -104.70 -0.51 -1.88 16 9 C -0.23 -5.22 7.95 -39.29 -0.31 -5.53 16 10 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 11 C -0.16 -4.35 8.70 -38.87 -0.34 -4.69 16 12 C 0.11 2.92 5.58 -106.82 -0.60 2.33 16 13 C -0.46 -12.58 9.05 -37.75 -0.34 -12.93 16 14 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 15 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 16 N -0.80 -21.00 10.95 55.55 0.61 -20.39 16 17 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 C -0.20 -4.91 9.44 -38.87 -0.37 -5.28 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 29 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 33 H 0.08 1.56 6.15 -51.93 -0.32 1.24 16 34 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.07 1.22 7.87 -51.92 -0.41 0.82 16 36 H 0.08 1.65 8.01 -52.48 -0.42 1.23 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 3.17 6.15 -52.49 -0.32 2.85 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -27.58 321.75 -9.87 -37.45 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.74 Total: 3.89 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -2.39 Total: -29.44 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: -0.55 Total: -30.73 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.58 -9.87 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.169 kcal (2) G-P(sol) polarization free energy of solvation -27.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds