Wall clock time and date at job start Mon Mar 30 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47331 * 2 1 4 4 C 1.53003 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46785 * 180.02562 * 4 3 2 6 6 C 1.46904 * 111.00271 * 293.95415 * 5 4 3 7 7 C 1.46900 * 110.99949 * 170.00381 * 5 4 3 8 8 C 1.50697 * 109.47214 * 189.99848 * 7 5 4 9 9 C 1.38656 * 119.87733 * 270.24664 * 8 7 5 10 10 C 1.38611 * 120.50290 * 180.29866 * 9 8 7 11 11 C 1.37646 * 120.24720 * 359.45638 * 10 9 8 12 12 C 1.40700 * 119.74049 * 0.26612 * 11 10 9 13 13 C 1.41394 * 120.23887 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99918 * 204.39256 * 13 12 11 15 15 C 1.39939 * 120.00458 * 24.38628 * 13 12 11 16 16 N 1.30826 * 119.99815 * 17.86380 * 15 13 12 17 17 Si 1.86807 * 120.00442 * 197.86044 * 15 13 12 18 18 H 1.48504 * 109.46582 * 94.69503 * 17 15 13 19 19 H 1.48499 * 109.47234 * 214.69507 * 17 15 13 20 20 H 1.48502 * 109.46792 * 334.69880 * 17 15 13 21 21 C 1.37595 * 119.87433 * 90.00220 * 8 7 5 22 22 H 1.08997 * 109.47037 * 299.99624 * 1 2 3 23 23 H 1.09000 * 109.46578 * 59.99917 * 1 2 3 24 24 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47207 * 239.99533 * 2 1 3 26 26 H 1.09004 * 109.47036 * 120.00249 * 2 1 3 27 27 H 1.09009 * 109.46970 * 59.99902 * 3 2 1 28 28 H 1.08995 * 109.47132 * 300.00300 * 3 2 1 29 29 H 1.08997 * 109.46866 * 60.00604 * 4 3 2 30 30 H 1.09000 * 109.46951 * 300.00188 * 4 3 2 31 31 H 1.09001 * 109.46837 * 296.05401 * 6 5 4 32 32 H 1.08999 * 109.46831 * 56.04853 * 6 5 4 33 33 H 1.08994 * 109.47376 * 176.05042 * 6 5 4 34 34 H 1.09001 * 109.46944 * 69.99817 * 7 5 4 35 35 H 1.09007 * 109.47049 * 310.00032 * 7 5 4 36 36 H 1.08005 * 119.75084 * 0.05290 * 9 8 7 37 37 H 1.07994 * 119.87907 * 179.72408 * 10 9 8 38 38 H 1.07991 * 120.12819 * 180.25140 * 11 10 9 39 39 H 0.97002 * 120.00124 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.13108 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.7108 3.5098 -1.2520 7 6 5.5085 2.8735 0.2399 8 6 5.9333 4.2996 0.4779 9 6 6.3129 5.0950 -0.5926 10 6 6.7118 6.4066 -0.3879 11 6 6.7245 6.9373 0.8820 12 6 6.3359 6.1412 1.9751 13 6 6.3455 6.6755 3.2842 14 1 6.4389 6.0173 4.1354 15 6 6.2340 8.0570 3.4770 16 7 5.7780 8.8171 2.5147 17 14 6.7364 8.8161 5.1083 18 1 8.1401 9.2927 5.0210 19 1 5.8431 9.9614 5.4173 20 1 6.6254 7.7975 6.1832 21 6 5.9382 4.8091 1.7560 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9285 -0.8891 30 1 3.9330 0.9287 0.8908 31 1 4.2178 3.0220 -2.0846 32 1 2.6326 3.4608 -1.4043 33 1 4.0230 4.5526 -1.1970 34 1 6.0328 2.4785 -0.6302 35 1 5.7519 2.2710 1.1152 36 1 6.3014 4.6882 -1.5931 37 1 7.0097 7.0157 -1.2285 38 1 7.0318 7.9606 1.0388 39 1 5.7004 9.7747 2.6485 40 1 5.6380 4.1893 2.5879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:35 Heat of formation + Delta-G solvation = -14.181080 kcal Electronic energy + Delta-G solvation = -17489.228984 eV Core-core repulsion = 14881.048610 eV Total energy + Delta-G solvation = -2608.180374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91546 -38.38028 -35.89794 -35.10046 -32.08309 -31.71707 -29.59348 -27.97927 -27.17603 -25.31051 -22.75800 -22.52802 -21.62719 -21.49703 -18.79148 -17.22342 -16.80118 -16.54140 -16.35994 -15.84937 -15.72752 -15.02407 -14.94507 -14.24292 -14.17397 -13.81449 -13.51706 -13.39341 -13.25797 -12.97057 -12.71663 -12.64243 -12.48815 -12.34038 -12.13852 -12.10326 -11.84753 -11.77635 -11.36161 -11.29939 -11.17557 -11.00048 -9.34322 -9.27721 -9.03288 -8.61001 -6.31588 1.00191 1.10484 1.38095 1.51953 1.53145 2.22204 2.70859 3.15920 3.81196 3.96399 4.09332 4.14582 4.29034 4.32882 4.43501 4.50788 4.54914 4.65254 4.70984 4.75318 4.79063 4.82983 4.96925 5.01593 5.08662 5.11239 5.14134 5.16572 5.31047 5.34664 5.42330 5.51139 5.53578 5.73034 6.06010 6.13027 6.13618 6.21870 6.32050 6.44059 6.73783 6.97766 7.08010 8.36430 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.004557 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.687327 B = 6142.868785 C = 6725.994634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.112 4.112 4 C 0.056 3.944 5 N -0.554 5.554 6 C 0.027 3.973 7 C 0.110 3.890 8 C -0.055 4.055 9 C -0.225 4.225 10 C -0.112 4.112 11 C -0.192 4.192 12 C 0.078 3.922 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.035 3.965 16 N -0.828 5.828 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.216 4.216 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.287 0.713 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -11.857 -4.888 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.150 4.150 4 C -0.071 4.071 5 N -0.278 5.278 6 C -0.121 4.121 7 C -0.017 4.017 8 C -0.056 4.056 9 C -0.245 4.245 10 C -0.130 4.130 11 C -0.212 4.212 12 C 0.076 3.924 13 C -0.534 4.534 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.454 5.454 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.236 4.236 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.732 -11.389 -4.566 13.543 hybrid contribution 0.608 0.422 0.047 0.742 sum -5.124 -10.967 -4.519 12.921 Atomic orbital electron populations 1.21760 0.95277 1.02068 1.01754 1.21462 0.96345 0.95489 1.02350 1.21597 0.93841 0.97576 1.02013 1.22200 0.96207 0.87771 1.00925 1.61904 1.13405 1.16714 1.35769 1.22401 1.01274 0.99193 0.89211 1.20894 0.87463 0.92994 1.00313 1.19456 0.97973 0.95271 0.92863 1.20504 1.12029 0.94681 0.97249 1.20934 1.00240 0.95729 0.96089 1.21276 1.06849 1.00152 0.92946 1.17956 0.88584 0.92002 0.93902 1.19817 1.47090 0.93045 0.93404 0.90972 1.26744 0.91566 0.97335 1.02291 1.69894 1.32591 1.07189 1.35751 0.85203 0.79096 0.78122 0.77318 1.18676 1.19207 1.18267 1.20935 1.10031 0.96763 0.95896 0.93127 0.92731 0.91747 0.91436 0.91766 0.92687 0.92013 0.94228 0.90883 0.95033 0.90591 0.92827 0.93778 0.90588 0.87169 0.87410 0.88359 0.90280 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.12 -2.04 5.93 30.59 0.18 -1.86 16 3 C -0.11 -2.50 5.14 30.59 0.16 -2.34 16 4 C 0.06 1.41 4.96 86.30 0.43 1.84 16 5 N -0.55 -18.04 4.75 -927.05 -4.41 -22.44 16 6 C 0.03 0.83 8.92 127.69 1.14 1.97 16 7 C 0.11 3.86 5.11 85.56 0.44 4.30 16 8 C -0.06 -2.43 4.88 -19.92 -0.10 -2.53 16 9 C -0.23 -9.82 7.95 22.46 0.18 -9.64 16 10 C -0.11 -5.33 10.02 22.22 0.22 -5.11 16 11 C -0.19 -10.54 8.70 22.73 0.20 -10.34 16 12 C 0.08 4.37 5.58 -21.29 -0.12 4.25 16 13 C -0.50 -28.38 9.05 23.46 0.21 -28.17 16 14 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 15 C 0.03 1.83 5.14 85.25 0.44 2.27 16 16 N -0.83 -44.95 10.95 21.82 0.24 -44.71 16 17 Si 0.98 39.56 29.60 68.60 2.03 41.59 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C -0.22 -11.05 9.44 22.73 0.21 -10.83 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.06 1.36 6.47 -2.39 -0.02 1.34 16 29 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.07 1.78 7.93 -2.39 -0.02 1.76 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 2.05 6.30 -2.39 -0.02 2.04 16 33 H 0.05 1.94 6.15 -2.39 -0.01 1.93 16 34 H 0.04 1.40 8.07 -2.39 -0.02 1.38 16 35 H 0.08 2.55 7.87 -2.38 -0.02 2.53 16 36 H 0.11 4.16 8.01 -2.91 -0.02 4.13 16 37 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.10 5.63 6.15 -2.92 -0.02 5.61 16 39 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 40 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -60.55 321.75 3.15 -57.40 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.98 Total: 26.01 kcal Atomic # 6 Polarization: -62.15 SS G_CDS: 4.31 Total: -57.85 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -4.17 Total: -67.15 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.55 3.15 -57.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.220 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds