Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47129 * 2 1 4 4 C 1.53006 * 109.46665 * 240.00566 * 2 1 3 5 5 C 1.52993 * 109.47136 * 64.99792 * 4 2 1 6 6 N 1.46911 * 109.46779 * 179.97438 * 5 4 2 7 7 C 1.46902 * 110.99614 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47149 * 324.99463 * 7 6 5 9 9 C 1.52997 * 109.47094 * 85.00357 * 7 6 5 10 10 C 1.50706 * 109.46577 * 205.00147 * 7 6 5 11 11 H 1.07999 * 120.00196 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99394 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47347 * 59.99862 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.50700 * 109.47506 * 120.00522 * 2 1 3 19 19 C 1.38234 * 120.00116 * 59.72324 * 18 2 1 20 20 C 1.38233 * 119.99921 * 179.81300 * 19 18 2 21 21 C 1.38245 * 120.00009 * 0.39639 * 20 19 18 22 22 C 1.38235 * 119.99547 * 359.85609 * 21 20 19 23 23 C 1.38235 * 120.00462 * 359.95917 * 22 21 20 24 24 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46733 * 299.99667 * 1 2 3 26 26 H 1.08991 * 109.47664 * 59.99538 * 1 2 3 27 27 H 1.09000 * 109.47012 * 304.98912 * 4 2 1 28 28 H 1.09000 * 109.46532 * 184.99846 * 4 2 1 29 29 H 1.09000 * 109.47362 * 60.00214 * 5 4 2 30 30 H 1.09000 * 109.47454 * 299.99489 * 5 4 2 31 31 H 1.00897 * 110.99488 * 56.04576 * 6 5 4 32 32 H 1.09002 * 109.47153 * 299.99508 * 9 7 6 33 33 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47261 * 59.99681 * 9 7 6 35 35 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99801 * 359.97438 * 19 18 2 37 37 H 1.07994 * 120.00101 * 180.23134 * 20 19 18 38 38 H 1.07999 * 120.00063 * 179.83441 * 21 20 19 39 39 H 1.08003 * 119.99706 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.99932 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6350 0.0691 -2.4953 6 7 2.1252 -0.6231 -3.6948 7 6 1.7536 0.1084 -4.9134 8 1 0.7757 0.5697 -4.7763 9 6 2.7949 1.1936 -5.1943 10 6 1.6989 -0.8484 -6.0765 11 1 1.9186 -1.8950 -5.9256 12 6 1.3693 -0.3874 -7.3334 13 7 1.1033 0.8874 -7.5174 14 14 1.3008 -1.5734 -8.7749 15 1 0.2894 -2.6260 -8.5023 16 1 0.9265 -0.8338 -10.0071 17 1 2.6327 -2.2032 -8.9616 18 6 2.0324 -0.7105 1.2304 19 6 1.6938 -2.0323 1.4519 20 6 2.1579 -2.6851 2.5786 21 6 2.9539 -2.0137 3.4879 22 6 3.2881 -0.6904 3.2688 23 6 2.8272 -0.0386 2.1403 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 1.6054 -1.7198 -1.2953 28 1 3.1262 -0.7994 -1.2057 29 1 2.0697 1.0676 -2.4494 30 1 0.5487 0.1473 -2.5390 31 1 1.7880 -1.5735 -3.7269 32 1 2.8345 1.8856 -4.3531 33 1 2.5194 1.7360 -6.0987 34 1 3.7728 0.7320 -5.3315 35 1 0.8718 1.2117 -8.4018 36 1 1.0688 -2.5557 0.7434 37 1 1.8965 -3.7188 2.7498 38 1 3.3142 -2.5230 4.3694 39 1 3.9096 -0.1657 3.9794 40 1 3.0880 0.9954 1.9694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061910567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = 1.436222 kcal Electronic energy + Delta-G solvation = -17327.369437 eV Core-core repulsion = 14719.866280 eV Total energy + Delta-G solvation = -2607.503157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56432 -36.69541 -34.93474 -32.47087 -30.96433 -30.20809 -28.75122 -26.64056 -25.17008 -23.83728 -22.71084 -21.51251 -19.82368 -19.58146 -16.90985 -16.40423 -15.41814 -15.22811 -14.93825 -14.51960 -14.06334 -13.80134 -13.39928 -13.24480 -13.06362 -12.68269 -12.46741 -12.11583 -11.78631 -11.53169 -11.30026 -11.00615 -10.99013 -10.82539 -10.63238 -10.61063 -10.39720 -10.12408 -10.03322 -9.79233 -8.96970 -8.81454 -8.68056 -8.45019 -7.20360 -6.00735 -4.07218 1.32618 1.35128 3.32104 3.36390 3.39322 3.74440 4.41310 4.65361 4.76939 4.92753 5.05376 5.09822 5.21572 5.30637 5.43091 5.46787 5.50474 5.64158 5.69484 5.91790 5.94497 6.01503 6.07846 6.13434 6.16853 6.26751 6.43738 6.45989 6.56043 6.66897 6.71354 6.92364 6.96711 7.17311 7.27379 7.54643 7.80210 7.93294 8.30555 8.43663 8.72041 9.04079 9.58665 11.05602 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042588 B = 0.003697 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.305754 B = 7572.839297 C = 7785.751243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 H 0.077 0.923 4 C -0.105 4.105 5 C 0.060 3.940 6 N -0.690 5.690 7 C 0.211 3.789 8 H 0.000 1.000 9 C -0.124 4.124 10 C -0.519 4.519 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.066 4.066 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.329 0.671 32 H 0.003 0.997 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -2.883 19.425 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.070 4.070 6 N -0.321 5.321 7 C 0.104 3.896 8 H 0.017 0.983 9 C -0.182 4.182 10 C -0.557 4.557 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.066 4.066 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.145 0.855 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.325 -2.456 19.291 19.492 hybrid contribution -0.933 -0.765 -0.839 1.469 sum 0.391 -3.221 18.453 18.736 Atomic orbital electron populations 1.21895 0.94413 1.02038 1.01858 1.20198 0.95950 0.99223 0.91910 0.90435 1.21624 1.01443 0.98699 0.92569 1.21951 0.96624 0.97983 0.90432 1.60721 1.63652 1.05460 1.02297 1.19089 0.92649 0.92257 0.85634 0.98275 1.21711 0.98781 0.97890 0.99858 1.21254 1.46826 0.94607 0.93059 0.92295 1.24926 0.95107 0.95210 0.98792 1.69890 1.47044 1.13259 1.22778 0.86583 0.78519 0.80864 0.81555 1.20333 1.21307 1.20187 1.19989 0.96572 0.94227 0.95799 1.21049 1.00178 0.94451 0.97491 1.21137 0.98186 0.99743 0.94752 1.21098 0.99337 0.94973 0.99554 1.21114 1.00128 0.94995 0.97645 1.21112 0.98248 0.99970 0.94452 0.92623 0.93034 0.91645 0.92300 0.91377 0.92088 0.96136 0.85452 0.97766 0.90157 0.95028 0.92893 0.86047 0.86322 0.86486 0.86363 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.76 37.16 0.33 -1.38 16 2 C -0.05 -0.67 2.56 -91.77 -0.24 -0.90 16 3 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 4 C -0.11 -1.54 4.69 -26.73 -0.13 -1.67 16 5 C 0.06 1.08 5.24 -3.82 -0.02 1.06 16 6 N -0.69 -15.07 6.30 -107.95 -0.68 -15.75 16 7 C 0.21 5.48 2.60 -68.86 -0.18 5.30 16 8 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 9 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 10 C -0.52 -14.48 8.59 -34.44 -0.30 -14.78 16 11 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 12 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 13 N -0.89 -25.79 11.32 55.43 0.63 -25.16 16 14 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.07 -0.79 4.78 -104.62 -0.50 -1.29 16 19 C -0.11 -1.30 8.76 -39.58 -0.35 -1.65 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.34 9.67 -39.58 -0.38 -1.72 16 24 H 0.05 0.63 7.37 -51.93 -0.38 0.25 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 27 H 0.06 0.84 7.59 -51.93 -0.39 0.44 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.14 7.44 -51.93 -0.39 0.75 16 30 H 0.02 0.38 6.48 -51.93 -0.34 0.04 16 31 H 0.33 6.98 8.22 -39.29 -0.32 6.66 16 32 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 33 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.12 1.31 7.16 -52.48 -0.38 0.93 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 1.18 7.95 -52.48 -0.42 0.76 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -29.26 321.26 -9.48 -38.74 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.54 Total: 4.07 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.71 Total: -23.17 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.05 Total: -40.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.26 -9.48 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.178 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds