Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47129 * 2 1 4 4 C 1.53006 * 109.46665 * 240.00566 * 2 1 3 5 5 C 1.52993 * 109.47136 * 64.99792 * 4 2 1 6 6 N 1.46911 * 109.46779 * 179.97438 * 5 4 2 7 7 C 1.46902 * 110.99614 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47149 * 324.99463 * 7 6 5 9 9 C 1.52997 * 109.47094 * 85.00357 * 7 6 5 10 10 C 1.50706 * 109.46577 * 205.00147 * 7 6 5 11 11 H 1.07999 * 120.00196 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99394 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47347 * 59.99862 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.50700 * 109.47506 * 120.00522 * 2 1 3 19 19 C 1.38234 * 120.00116 * 59.72324 * 18 2 1 20 20 C 1.38233 * 119.99921 * 179.81300 * 19 18 2 21 21 C 1.38245 * 120.00009 * 0.39639 * 20 19 18 22 22 C 1.38235 * 119.99547 * 359.85609 * 21 20 19 23 23 C 1.38235 * 120.00462 * 359.95917 * 22 21 20 24 24 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46733 * 299.99667 * 1 2 3 26 26 H 1.08991 * 109.47664 * 59.99538 * 1 2 3 27 27 H 1.09000 * 109.47012 * 304.98912 * 4 2 1 28 28 H 1.09000 * 109.46532 * 184.99846 * 4 2 1 29 29 H 1.09000 * 109.47362 * 60.00214 * 5 4 2 30 30 H 1.09000 * 109.47454 * 299.99489 * 5 4 2 31 31 H 1.00897 * 110.99488 * 56.04576 * 6 5 4 32 32 H 1.09002 * 109.47153 * 299.99508 * 9 7 6 33 33 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47261 * 59.99681 * 9 7 6 35 35 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99801 * 359.97438 * 19 18 2 37 37 H 1.07994 * 120.00101 * 180.23134 * 20 19 18 38 38 H 1.07999 * 120.00063 * 179.83441 * 21 20 19 39 39 H 1.08003 * 119.99706 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.99932 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6350 0.0691 -2.4953 6 7 2.1252 -0.6231 -3.6948 7 6 1.7536 0.1084 -4.9134 8 1 0.7757 0.5697 -4.7763 9 6 2.7949 1.1936 -5.1943 10 6 1.6989 -0.8484 -6.0765 11 1 1.9186 -1.8950 -5.9256 12 6 1.3693 -0.3874 -7.3334 13 7 1.1033 0.8874 -7.5174 14 14 1.3008 -1.5734 -8.7749 15 1 0.2894 -2.6260 -8.5023 16 1 0.9265 -0.8338 -10.0071 17 1 2.6327 -2.2032 -8.9616 18 6 2.0324 -0.7105 1.2304 19 6 1.6938 -2.0323 1.4519 20 6 2.1579 -2.6851 2.5786 21 6 2.9539 -2.0137 3.4879 22 6 3.2881 -0.6904 3.2688 23 6 2.8272 -0.0386 2.1403 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 1.6054 -1.7198 -1.2953 28 1 3.1262 -0.7994 -1.2057 29 1 2.0697 1.0676 -2.4494 30 1 0.5487 0.1473 -2.5390 31 1 1.7880 -1.5735 -3.7269 32 1 2.8345 1.8856 -4.3531 33 1 2.5194 1.7360 -6.0987 34 1 3.7728 0.7320 -5.3315 35 1 0.8718 1.2117 -8.4018 36 1 1.0688 -2.5557 0.7434 37 1 1.8965 -3.7188 2.7498 38 1 3.3142 -2.5230 4.3694 39 1 3.9096 -0.1657 3.9794 40 1 3.0880 0.9954 1.9694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061910567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = -14.142848 kcal Electronic energy + Delta-G solvation = -17328.044996 eV Core-core repulsion = 14719.866280 eV Total energy + Delta-G solvation = -2608.178716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41590 -38.18978 -36.39851 -34.33541 -31.76766 -31.60061 -30.03346 -28.14239 -27.24744 -24.98251 -23.58307 -22.69499 -21.69888 -20.69771 -18.48909 -17.69607 -16.89471 -16.47022 -16.26864 -15.84765 -15.38447 -15.12499 -14.68500 -14.34072 -14.15777 -14.11638 -13.78853 -13.50020 -13.15681 -12.87419 -12.80956 -12.67379 -12.45771 -12.24224 -12.21078 -12.05175 -12.03751 -11.67051 -11.44947 -11.30663 -10.88134 -10.56924 -9.76180 -9.53407 -9.03138 -8.13751 -6.28508 0.51547 0.55827 1.42274 1.44618 1.52212 2.41394 2.93374 3.14481 3.55448 3.83888 3.88311 4.18831 4.22378 4.32798 4.35645 4.41780 4.52914 4.63177 4.68425 4.73230 4.77087 4.84375 5.00807 5.03901 5.06877 5.14167 5.21451 5.23075 5.23331 5.34373 5.40920 5.49362 5.64975 5.67148 5.67982 5.82327 5.85904 6.18816 6.21633 6.48085 6.78530 7.00849 7.42141 8.91900 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042588 B = 0.003697 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.305754 B = 7572.839297 C = 7785.751243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 H 0.078 0.922 4 C -0.091 4.091 5 C 0.063 3.937 6 N -0.690 5.690 7 C 0.215 3.785 8 H -0.032 1.032 9 C -0.113 4.113 10 C -0.541 4.541 11 H 0.060 0.940 12 C 0.012 3.988 13 N -0.919 5.919 14 Si 0.964 3.036 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.332 0.668 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -3.993 20.636 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 H 0.096 0.904 4 C -0.129 4.129 5 C -0.067 4.067 6 N -0.321 5.321 7 C 0.106 3.894 8 H -0.014 1.014 9 C -0.172 4.172 10 C -0.579 4.579 11 H 0.078 0.922 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.151 4.151 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.149 0.851 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.689 -3.572 20.524 20.901 hybrid contribution -1.037 -0.405 -1.130 1.586 sum 0.652 -3.977 19.394 19.808 Atomic orbital electron populations 1.21860 0.93984 1.02260 1.01786 1.20083 0.96261 0.98998 0.91199 0.90388 1.21468 1.00895 0.98615 0.91906 1.21993 0.96391 0.97911 0.90369 1.60650 1.63774 1.05546 1.02113 1.18912 0.91143 0.92273 0.87071 1.01405 1.21546 0.98232 0.97917 0.99479 1.21594 1.47202 0.95013 0.94118 0.92207 1.25767 0.94562 0.96870 1.01506 1.70021 1.47435 1.14919 1.23440 0.85518 0.78758 0.78750 0.78040 1.19436 1.20873 1.19622 1.19960 0.97658 0.94659 0.95882 1.21188 1.00687 0.94478 0.98241 1.21428 0.97982 1.00741 0.94377 1.21458 0.98625 0.95013 1.00115 1.21431 0.99997 0.95349 0.97594 1.21323 0.98291 1.00605 0.94858 0.92277 0.91920 0.92822 0.91833 0.92173 0.92761 0.96320 0.85114 0.96049 0.92403 0.95443 0.92788 0.85945 0.84473 0.84092 0.84204 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.76 71.98 0.63 -2.60 16 2 C -0.05 -1.12 2.56 -11.54 -0.03 -1.15 16 3 H 0.08 1.86 7.88 -2.39 -0.02 1.84 16 4 C -0.09 -2.61 4.69 30.59 0.14 -2.47 16 5 C 0.06 2.27 5.24 86.30 0.45 2.72 16 6 N -0.69 -30.25 6.30 -495.43 -3.12 -33.37 16 7 C 0.21 11.30 2.60 44.17 0.11 11.42 16 8 H -0.03 -1.83 7.80 -2.39 -0.02 -1.85 16 9 C -0.11 -5.87 9.19 71.98 0.66 -5.20 16 10 C -0.54 -30.38 8.59 25.60 0.22 -30.16 16 11 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 12 C 0.01 0.68 5.30 84.66 0.45 1.13 16 13 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 14 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.08 -1.86 4.78 -19.87 -0.09 -1.95 16 19 C -0.13 -2.77 8.76 22.27 0.20 -2.57 16 20 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 21 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.76 9.67 22.27 0.22 -2.54 16 24 H 0.06 1.29 7.37 -2.39 -0.02 1.27 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.33 6.56 -2.39 -0.02 1.32 16 27 H 0.06 1.76 7.59 -2.39 -0.02 1.74 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.03 7.44 -2.39 -0.02 2.01 16 30 H 0.02 0.69 6.48 -2.39 -0.02 0.68 16 31 H 0.33 14.10 8.22 -89.70 -0.74 13.37 16 32 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 33 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 34 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.12 2.52 7.16 -2.91 -0.02 2.49 16 37 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.13 2.34 7.95 -2.91 -0.02 2.32 16 Total: -1.00 -61.80 321.26 3.04 -58.76 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.26 Total: 21.92 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 3.63 Total: -39.63 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.88 Total: -86.91 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.80 3.04 -58.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.620 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds