Wall clock time and date at job start Mon Mar 30 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47407 * 2 1 4 4 C 1.50696 * 109.47391 * 240.00068 * 2 1 3 5 5 H 1.08007 * 120.00013 * 240.00817 * 4 2 1 6 6 C 1.37878 * 120.00166 * 59.99652 * 4 2 1 7 7 N 1.31508 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47167 * 90.00086 * 8 6 4 10 10 H 1.48499 * 109.46980 * 209.99961 * 8 6 4 11 11 H 1.48498 * 109.47217 * 330.00293 * 8 6 4 12 12 N 1.46900 * 109.47139 * 119.99514 * 2 1 3 13 13 C 1.46896 * 111.00330 * 275.00103 * 12 2 1 14 14 C 1.52999 * 109.47091 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.46811 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.46884 * 55.00564 * 15 14 13 17 17 C 1.52997 * 109.47127 * 294.99812 * 15 14 13 18 18 C 1.50708 * 109.46735 * 175.00023 * 15 14 13 19 19 C 1.38231 * 119.99923 * 59.72871 * 18 15 14 20 20 C 1.38237 * 119.99759 * 179.78984 * 19 18 15 21 21 C 1.38230 * 119.99997 * 0.43515 * 20 19 18 22 22 C 1.38237 * 120.00148 * 359.81434 * 21 20 19 23 23 C 1.38233 * 119.99625 * 239.99580 * 18 15 14 24 24 H 1.09005 * 109.46884 * 60.00070 * 1 2 3 25 25 H 1.08996 * 109.46962 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47499 * 300.00508 * 1 2 3 27 27 H 0.97000 * 120.00016 * 180.02562 * 7 6 4 28 28 H 1.00905 * 110.99854 * 38.95828 * 12 2 1 29 29 H 1.09001 * 109.47084 * 59.99718 * 13 12 2 30 30 H 1.08998 * 109.46914 * 300.00312 * 13 12 2 31 31 H 1.09001 * 109.47273 * 59.99972 * 14 13 12 32 32 H 1.09000 * 109.47001 * 299.99592 * 14 13 12 33 33 H 1.09002 * 109.47153 * 180.02562 * 17 15 14 34 34 H 1.09001 * 109.46832 * 60.00321 * 17 15 14 35 35 H 1.09004 * 109.47261 * 300.00303 * 17 15 14 36 36 H 1.08004 * 120.00196 * 359.97438 * 19 18 15 37 37 H 1.07999 * 119.99735 * 180.27963 * 20 19 18 38 38 H 1.08003 * 120.00266 * 179.84067 * 21 20 19 39 39 H 1.07993 * 120.00255 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00573 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5950 -0.5330 3.5745 15 6 2.6598 0.4200 4.7697 16 1 1.6838 0.8815 4.9197 17 6 3.7020 1.5070 4.4993 18 6 3.0465 -0.3503 6.0060 19 6 4.2497 -1.0296 6.0489 20 6 4.6064 -1.7326 7.1845 21 6 3.7558 -1.7637 8.2737 22 6 2.5503 -1.0887 8.2288 23 6 2.1956 -0.3821 7.0948 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7089 1.1612 -3.4844 28 1 1.4496 -1.4979 1.4101 29 1 1.0871 0.6165 2.5525 30 1 2.7588 1.0463 2.1181 31 1 3.5904 -0.9271 3.3692 32 1 1.9182 -1.3563 3.8030 33 1 3.7484 2.1857 5.3510 34 1 3.4222 2.0641 3.6052 35 1 4.6780 1.0454 4.3493 36 1 4.9124 -1.0086 5.1963 37 1 5.5484 -2.2595 7.2197 38 1 4.0333 -2.3151 9.1600 39 1 1.8856 -1.1133 9.0796 40 1 1.2538 0.1453 7.0599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061910568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:05 Heat of formation + Delta-G solvation = -13.214096 kcal Electronic energy + Delta-G solvation = -17327.835462 eV Core-core repulsion = 14719.697019 eV Total energy + Delta-G solvation = -2608.138442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41509 -38.24303 -36.41210 -34.33883 -31.77058 -31.60431 -29.99515 -27.94121 -27.22417 -24.97142 -23.57154 -22.65377 -22.10897 -20.67203 -18.35391 -17.71855 -16.79631 -16.52445 -16.10022 -15.86281 -15.34622 -15.22190 -14.58288 -14.36526 -14.29636 -14.08548 -13.65005 -13.36448 -13.15250 -13.07232 -12.86921 -12.63133 -12.53470 -12.29375 -12.18256 -12.06027 -11.97444 -11.71777 -11.48087 -11.25135 -10.98775 -10.48784 -9.76233 -9.53503 -8.94941 -8.09525 -6.21022 0.51472 0.55758 1.43366 1.43832 1.55335 2.44534 2.93368 3.18523 3.55997 3.80846 3.95450 4.17254 4.21669 4.32086 4.33907 4.47081 4.52034 4.64059 4.67259 4.70675 4.74526 4.82008 4.87931 5.00222 5.06803 5.09357 5.17608 5.22605 5.22925 5.35840 5.39255 5.46505 5.65120 5.68133 5.69291 5.82128 5.83541 6.18787 6.27808 6.66264 6.84805 6.95157 7.49226 8.96122 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042500 B = 0.003696 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.668222 B = 7574.578533 C = 7782.742318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.690 5.690 13 C 0.063 3.937 14 C -0.092 4.092 15 C -0.046 4.046 16 H 0.078 0.922 17 C -0.142 4.142 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.132 4.132 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.261 0.739 28 H 0.330 0.670 29 H 0.016 0.984 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -2.553 20.785 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.066 4.066 14 C -0.130 4.130 15 C -0.065 4.065 16 H 0.096 0.904 17 C -0.199 4.199 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.150 4.150 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.599 -2.347 20.480 21.121 hybrid contribution -0.860 -0.041 -0.936 1.272 sum 3.738 -2.388 19.544 20.041 Atomic orbital electron populations 1.22237 1.00058 0.99215 1.00029 1.18938 0.90018 0.92689 0.87769 0.98151 1.21484 1.30452 1.12470 0.91147 0.92742 1.25746 0.95476 0.95883 1.01970 1.70010 1.38116 1.24273 1.24004 0.85495 0.78811 0.78208 0.78721 1.20040 1.20911 1.19488 1.60677 1.57777 1.09739 1.03783 1.21977 0.98182 0.95726 0.90760 1.21483 1.01640 0.97528 0.92341 1.20087 0.99920 0.95058 0.91428 0.90351 1.21854 0.98538 0.97970 1.01522 1.19961 0.94931 0.97927 0.95350 1.21195 0.96723 0.97915 0.98756 1.21425 1.00521 0.99197 0.93402 1.21454 0.94574 0.99937 0.99214 1.21432 0.97352 0.97227 0.98352 1.21317 0.99852 1.00355 0.93501 0.91947 0.94943 0.95708 0.92987 0.85321 0.96601 0.92471 0.91640 0.92376 0.91925 0.92719 0.92405 0.86089 0.84545 0.84093 0.84168 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.94 71.98 0.64 -7.04 16 2 C 0.21 11.16 2.57 44.17 0.11 11.28 16 3 H 0.00 0.03 7.80 -2.39 -0.02 0.01 16 4 C -0.52 -29.42 8.84 25.60 0.23 -29.20 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.86 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.69 -29.95 6.23 -495.47 -3.09 -33.04 16 13 C 0.06 2.25 5.24 86.30 0.45 2.71 16 14 C -0.09 -2.63 4.68 30.60 0.14 -2.48 16 15 C -0.05 -1.10 2.56 -11.54 -0.03 -1.13 16 16 H 0.08 1.82 7.88 -2.39 -0.02 1.80 16 17 C -0.14 -3.28 8.76 71.98 0.63 -2.65 16 18 C -0.08 -1.85 4.78 -19.86 -0.09 -1.95 16 19 C -0.13 -2.81 8.76 22.27 0.20 -2.61 16 20 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 21 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.69 9.67 22.27 0.22 -2.48 16 24 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 25 H 0.03 1.51 8.13 -2.39 -0.02 1.50 16 26 H 0.02 1.07 7.45 -2.39 -0.02 1.06 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.33 13.51 8.47 -89.69 -0.76 12.75 16 29 H 0.02 0.57 7.44 -2.39 -0.02 0.55 16 30 H 0.06 2.14 6.48 -2.39 -0.02 2.13 16 31 H 0.06 1.94 7.56 -2.39 -0.02 1.92 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.37 6.57 -2.39 -0.02 1.35 16 35 H 0.06 1.32 7.41 -2.38 -0.02 1.30 16 36 H 0.12 2.60 7.17 -2.91 -0.02 2.58 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.13 2.27 7.95 -2.91 -0.02 2.25 16 Total: -1.00 -61.93 321.60 3.04 -58.89 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.24 Total: 22.32 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.62 Total: -40.91 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.85 Total: -86.90 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.93 3.04 -58.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.675 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds