Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.52996 * 109.47062 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.47338 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47149 * 305.00022 * 15 14 13 17 17 C 1.53006 * 109.47227 * 64.99831 * 15 14 13 18 18 C 1.50705 * 109.47352 * 184.99834 * 15 14 13 19 19 C 1.38233 * 119.99628 * 299.72787 * 18 15 14 20 20 C 1.38235 * 119.99688 * 179.80962 * 19 18 15 21 21 C 1.38231 * 120.00098 * 0.39519 * 20 19 18 22 22 C 1.38241 * 119.99965 * 359.85901 * 21 20 19 23 23 C 1.38224 * 119.99944 * 119.99833 * 18 15 14 24 24 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 25 25 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 26 26 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 27 27 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 28 28 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 29 29 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 30 30 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 31 31 H 1.09007 * 109.46822 * 300.00021 * 14 13 12 32 32 H 1.09000 * 109.47280 * 59.99408 * 14 13 12 33 33 H 1.09000 * 109.47121 * 180.02562 * 17 15 14 34 34 H 1.08998 * 109.46707 * 300.00313 * 17 15 14 35 35 H 1.09001 * 109.46899 * 60.00039 * 17 15 14 36 36 H 1.08003 * 120.00502 * 359.97438 * 19 18 15 37 37 H 1.08008 * 120.00215 * 180.22840 * 20 19 18 38 38 H 1.08004 * 120.00379 * 179.83197 * 21 20 19 39 39 H 1.08001 * 119.99687 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00566 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5962 -0.5325 3.5742 15 6 2.6610 0.4205 4.7694 16 1 3.2657 1.2892 4.5091 17 6 1.2469 0.8751 5.1365 18 6 3.2814 -0.2895 5.9450 19 6 2.6841 -1.4244 6.4608 20 6 3.2554 -2.0779 7.5367 21 6 4.4194 -1.5919 8.1019 22 6 5.0139 -0.4539 7.5894 23 6 4.4447 0.1974 6.5111 24 1 -0.3633 0.6094 0.8274 25 1 -0.3634 0.4118 -0.9415 26 1 -0.3633 -1.0214 0.1140 27 1 2.2478 -1.8381 -3.4691 28 1 2.9173 -1.1203 1.0288 29 1 2.7587 1.0465 2.1182 30 1 1.0870 0.6165 2.5525 31 1 1.9201 -1.3563 3.8031 32 1 3.5916 -0.9259 3.3684 33 1 1.2931 1.5544 5.9877 34 1 0.7981 1.3886 4.2862 35 1 0.6421 0.0064 5.3968 36 1 1.7726 -1.8021 6.0216 37 1 2.7907 -2.9668 7.9374 38 1 4.8643 -2.1009 8.9442 39 1 5.9232 -0.0739 8.0313 40 1 4.9093 1.0864 6.1106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061910569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = 1.566105 kcal Electronic energy + Delta-G solvation = -17393.120347 eV Core-core repulsion = 14785.622822 eV Total energy + Delta-G solvation = -2607.497525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62136 -36.84643 -35.07928 -32.50459 -31.01401 -30.53011 -29.10719 -26.90360 -24.82582 -23.81315 -22.75068 -21.53495 -19.88712 -19.46893 -17.47686 -16.94964 -15.62487 -15.33023 -14.87508 -14.42792 -14.10376 -13.72282 -13.58692 -13.38416 -13.27654 -12.81445 -12.43789 -12.27543 -11.81651 -11.77416 -11.62924 -11.34471 -11.21576 -10.94859 -10.75770 -10.48790 -10.36443 -10.22797 -9.89330 -9.65317 -9.01650 -8.87546 -8.75393 -8.22004 -7.46575 -6.45616 -4.06661 1.27550 1.30451 3.38779 3.41611 3.60289 3.69470 4.48309 4.57275 4.70761 4.88287 4.97824 5.01418 5.14752 5.27402 5.34812 5.38168 5.44793 5.49186 5.70136 5.73088 5.85994 5.93769 5.97030 6.04280 6.12469 6.16578 6.36827 6.38664 6.42374 6.48463 6.54143 6.65966 6.72808 6.84077 6.91700 6.96642 7.50203 7.78340 8.16242 8.40264 8.53536 8.96489 9.62262 10.94327 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.003894 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.415031 B = 7188.774872 C = 7303.452950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.188 3.812 3 H -0.008 1.008 4 C -0.605 4.605 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.906 5.906 8 Si 1.048 2.952 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.682 5.682 13 C 0.056 3.944 14 C -0.106 4.106 15 C -0.054 4.054 16 H 0.076 0.924 17 C -0.144 4.144 18 C -0.067 4.067 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.017 0.983 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.268 0.732 28 H 0.335 0.665 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 2.681 22.133 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.079 3.921 3 H 0.009 0.991 4 C -0.643 4.643 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.876 3.124 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.313 5.313 13 C -0.074 4.074 14 C -0.144 4.144 15 C -0.073 4.073 16 H 0.094 0.906 17 C -0.201 4.201 18 C -0.067 4.067 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.590 3.578 21.167 21.527 hybrid contribution 1.339 -0.720 0.929 1.782 sum 2.930 2.858 22.097 22.472 Atomic orbital electron populations 1.22117 0.98395 1.00229 0.98699 1.19405 0.92087 0.92297 0.88334 0.99051 1.22108 1.40677 1.10172 0.91332 0.92239 1.25732 0.94640 1.05020 0.92072 1.70852 1.41766 1.09949 1.31446 0.83998 0.77099 0.75301 0.75964 1.21107 1.19995 1.21231 1.60575 1.32576 1.32783 1.05357 1.22021 0.99769 0.94202 0.91373 1.21621 1.01497 0.98072 0.93219 1.20197 0.96815 0.97868 0.92401 0.90594 1.21882 0.95503 1.01309 1.01387 1.19964 0.94915 0.95454 0.96402 1.21063 1.00188 0.95409 0.96436 1.21148 0.96183 0.99821 0.96635 1.21108 0.96422 0.96975 1.00374 1.21118 0.99859 0.96043 0.96871 1.21103 0.95869 1.00211 0.96653 0.96433 0.93015 0.93191 0.92226 0.84758 0.96433 0.91583 0.91159 0.92265 0.93000 0.91754 0.92419 0.85939 0.86259 0.86439 0.86340 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.05 37.16 0.34 -2.81 16 2 C 0.19 4.59 2.18 -68.87 -0.15 4.44 16 3 H -0.01 -0.20 6.46 -51.92 -0.34 -0.53 16 4 C -0.60 -17.23 8.83 -34.44 -0.30 -17.53 16 5 H 0.06 1.82 7.92 -52.49 -0.42 1.40 16 6 C 0.03 0.89 5.29 -17.82 -0.09 0.80 16 7 N -0.91 -28.05 13.70 55.43 0.76 -27.29 16 8 Si 1.05 25.49 26.29 -169.99 -4.47 21.02 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 10 H -0.27 -6.18 5.76 56.52 0.33 -5.86 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -14.46 6.30 -107.95 -0.68 -15.14 16 13 C 0.06 0.96 5.24 -3.83 -0.02 0.94 16 14 C -0.11 -1.49 4.69 -26.73 -0.13 -1.62 16 15 C -0.05 -0.64 2.56 -91.77 -0.24 -0.87 16 16 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 17 C -0.14 -1.58 8.76 37.16 0.33 -1.26 16 18 C -0.07 -0.78 4.78 -104.63 -0.50 -1.28 16 19 C -0.11 -1.26 8.76 -39.58 -0.35 -1.61 16 20 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 21 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.30 9.67 -39.59 -0.38 -1.68 16 24 H 0.02 0.34 7.62 -51.93 -0.40 -0.05 16 25 H 0.05 1.23 4.88 -51.93 -0.25 0.97 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.27 8.26 8.73 -40.82 -0.36 7.91 16 28 H 0.33 7.17 8.26 -39.29 -0.32 6.85 16 29 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 30 H 0.07 1.11 5.99 -51.93 -0.31 0.80 16 31 H 0.07 1.01 7.59 -51.92 -0.39 0.62 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.74 6.56 -51.93 -0.34 0.39 16 35 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 36 H 0.12 1.29 7.16 -52.48 -0.38 0.91 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.13 7.95 -52.49 -0.42 0.71 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -30.45 317.22 -8.84 -39.29 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.54 Total: 4.68 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -2.69 Total: -27.33 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.08 Total: -42.44 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.47 Total: 21.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.45 -8.84 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.854 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds