Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.52996 * 109.47062 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.47338 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47149 * 305.00022 * 15 14 13 17 17 C 1.53006 * 109.47227 * 64.99831 * 15 14 13 18 18 C 1.50705 * 109.47352 * 184.99834 * 15 14 13 19 19 C 1.38233 * 119.99628 * 299.72787 * 18 15 14 20 20 C 1.38235 * 119.99688 * 179.80962 * 19 18 15 21 21 C 1.38231 * 120.00098 * 0.39519 * 20 19 18 22 22 C 1.38241 * 119.99965 * 359.85901 * 21 20 19 23 23 C 1.38224 * 119.99944 * 119.99833 * 18 15 14 24 24 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 25 25 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 26 26 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 27 27 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 28 28 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 29 29 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 30 30 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 31 31 H 1.09007 * 109.46822 * 300.00021 * 14 13 12 32 32 H 1.09000 * 109.47280 * 59.99408 * 14 13 12 33 33 H 1.09000 * 109.47121 * 180.02562 * 17 15 14 34 34 H 1.08998 * 109.46707 * 300.00313 * 17 15 14 35 35 H 1.09001 * 109.46899 * 60.00039 * 17 15 14 36 36 H 1.08003 * 120.00502 * 359.97438 * 19 18 15 37 37 H 1.08008 * 120.00215 * 180.22840 * 20 19 18 38 38 H 1.08004 * 120.00379 * 179.83197 * 21 20 19 39 39 H 1.08001 * 119.99687 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00566 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5962 -0.5325 3.5742 15 6 2.6610 0.4205 4.7694 16 1 3.2657 1.2892 4.5091 17 6 1.2469 0.8751 5.1365 18 6 3.2814 -0.2895 5.9450 19 6 2.6841 -1.4244 6.4608 20 6 3.2554 -2.0779 7.5367 21 6 4.4194 -1.5919 8.1019 22 6 5.0139 -0.4539 7.5894 23 6 4.4447 0.1974 6.5111 24 1 -0.3633 0.6094 0.8274 25 1 -0.3634 0.4118 -0.9415 26 1 -0.3633 -1.0214 0.1140 27 1 2.2478 -1.8381 -3.4691 28 1 2.9173 -1.1203 1.0288 29 1 2.7587 1.0465 2.1182 30 1 1.0870 0.6165 2.5525 31 1 1.9201 -1.3563 3.8031 32 1 3.5916 -0.9259 3.3684 33 1 1.2931 1.5544 5.9877 34 1 0.7981 1.3886 4.2862 35 1 0.6421 0.0064 5.3968 36 1 1.7726 -1.8021 6.0216 37 1 2.7907 -2.9668 7.9374 38 1 4.8643 -2.1009 8.9442 39 1 5.9232 -0.0739 8.0313 40 1 4.9093 1.0864 6.1106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061910569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = -16.435506 kcal Electronic energy + Delta-G solvation = -17393.900956 eV Core-core repulsion = 14785.622822 eV Total energy + Delta-G solvation = -2608.278133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43760 -38.29395 -36.44912 -34.46927 -32.03125 -31.74939 -30.22910 -28.22152 -26.79982 -24.96535 -23.59016 -22.65590 -21.56462 -20.69077 -19.60356 -17.75413 -16.95644 -16.42958 -15.99777 -15.82579 -15.50216 -15.10305 -14.78562 -14.64102 -14.29841 -14.12584 -13.88670 -13.54408 -13.30573 -13.17554 -12.97644 -12.60821 -12.35606 -12.28596 -12.12660 -11.94532 -11.77208 -11.53690 -11.47713 -11.26897 -11.00034 -10.42449 -9.78633 -9.55877 -9.19151 -8.75651 -6.39542 0.49219 0.53380 1.44708 1.51291 1.71228 2.46853 2.90771 3.04048 3.45187 3.76457 3.90537 4.14100 4.19084 4.28186 4.31132 4.43328 4.50025 4.55843 4.60486 4.66617 4.72429 4.75577 4.86107 4.95071 4.97986 5.06553 5.11048 5.12889 5.20919 5.21787 5.36712 5.39033 5.60637 5.62770 5.65879 5.78712 5.80746 6.00541 6.16496 6.28819 6.67819 6.77199 7.39298 8.61396 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.003894 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.415031 B = 7188.774872 C = 7303.452950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.189 3.811 3 H -0.004 1.004 4 C -0.610 4.610 5 H 0.021 0.979 6 C -0.020 4.020 7 N -0.937 5.937 8 Si 1.086 2.914 9 H -0.287 1.287 10 H -0.242 1.242 11 H -0.267 1.267 12 N -0.689 5.689 13 C 0.058 3.942 14 C -0.095 4.095 15 C -0.046 4.046 16 H 0.079 0.921 17 C -0.141 4.141 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.133 4.133 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.252 0.748 28 H 0.330 0.670 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 4.276 24.385 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.079 3.921 3 H 0.013 0.987 4 C -0.648 4.648 5 H 0.039 0.961 6 C -0.218 4.218 7 N -0.573 5.573 8 Si 0.907 3.093 9 H -0.213 1.213 10 H -0.166 1.166 11 H -0.193 1.193 12 N -0.319 5.319 13 C -0.071 4.071 14 C -0.132 4.132 15 C -0.065 4.065 16 H 0.097 0.903 17 C -0.198 4.198 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.146 0.854 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.283 5.158 23.459 24.053 hybrid contribution 1.512 -1.325 0.311 2.034 sum 2.795 3.834 23.770 24.239 Atomic orbital electron populations 1.22012 0.97026 1.00251 0.99686 1.19303 0.93079 0.91924 0.87805 0.98654 1.22355 1.39865 1.08919 0.93614 0.96054 1.27217 0.94224 1.08615 0.91770 1.70985 1.44169 1.09549 1.32585 0.83548 0.78875 0.70462 0.76425 1.21343 1.16591 1.19254 1.60554 1.32367 1.33618 1.05361 1.22111 1.00470 0.93792 0.90737 1.21489 1.00656 0.98161 0.92937 1.20097 0.97571 0.97298 0.91561 0.90276 1.21858 0.94832 1.01502 1.01623 1.19982 0.95586 0.95976 0.96686 1.21199 1.00543 0.95714 0.97132 1.21433 0.96494 1.00356 0.96337 1.21456 0.96126 0.96886 1.00792 1.21437 1.00519 0.95993 0.96497 1.21324 0.95794 1.00823 0.97171 0.93141 0.93673 0.94275 0.93927 0.85375 0.96350 0.90751 0.91535 0.93070 0.91968 0.92088 0.92357 0.85940 0.84559 0.84162 0.84241 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 9.05 71.98 0.65 -5.15 16 2 C 0.19 9.00 2.18 44.17 0.10 9.10 16 3 H 0.00 -0.19 6.46 -2.38 -0.02 -0.20 16 4 C -0.61 -35.27 8.83 25.60 0.23 -35.04 16 5 H 0.02 1.35 7.92 -2.91 -0.02 1.33 16 6 C -0.02 -1.17 5.29 84.65 0.45 -0.72 16 7 N -0.94 -59.46 13.70 21.45 0.29 -59.16 16 8 Si 1.09 50.11 26.29 68.60 1.80 51.92 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.24 -9.89 5.76 99.48 0.57 -9.31 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 N -0.69 -28.77 6.30 -495.45 -3.12 -31.89 16 13 C 0.06 1.89 5.24 86.30 0.45 2.34 16 14 C -0.09 -2.56 4.69 30.59 0.14 -2.41 16 15 C -0.05 -1.02 2.56 -11.54 -0.03 -1.05 16 16 H 0.08 1.69 7.88 -2.39 -0.02 1.67 16 17 C -0.14 -2.83 8.76 71.98 0.63 -2.20 16 18 C -0.08 -1.79 4.78 -19.87 -0.09 -1.88 16 19 C -0.13 -2.70 8.76 22.27 0.20 -2.50 16 20 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.65 9.67 22.27 0.22 -2.43 16 24 H 0.05 1.87 7.62 -2.39 -0.02 1.85 16 25 H 0.04 2.02 4.88 -2.39 -0.01 2.01 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.25 16.24 8.73 -92.71 -0.81 15.44 16 28 H 0.33 14.26 8.26 -89.69 -0.74 13.52 16 29 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 30 H 0.07 2.31 5.99 -2.39 -0.01 2.30 16 31 H 0.07 1.85 7.59 -2.38 -0.02 1.83 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.25 6.56 -2.39 -0.02 1.24 16 35 H 0.06 1.15 7.37 -2.39 -0.02 1.13 16 36 H 0.12 2.47 7.16 -2.91 -0.02 2.45 16 37 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.13 2.21 7.95 -2.91 -0.02 2.19 16 Total: -1.00 -65.74 317.22 2.67 -63.07 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.09 Total: 24.19 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 3.60 Total: -48.12 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -2.83 Total: -91.06 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 1.80 Total: 51.92 kcal Total: -65.74 2.67 -63.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.636 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds