Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47226 * 2 1 4 4 H 1.08995 * 109.46913 * 184.22684 * 3 2 1 5 5 C 1.50694 * 109.46907 * 304.23104 * 3 2 1 6 6 H 1.08005 * 120.00581 * 120.00098 * 5 3 2 7 7 C 1.37878 * 119.99902 * 299.99665 * 5 3 2 8 8 N 1.31518 * 119.99957 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00248 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46884 * 89.99667 * 9 7 5 11 11 H 1.48494 * 109.47634 * 210.00196 * 9 7 5 12 12 H 1.48506 * 109.46751 * 330.00275 * 9 7 5 13 13 N 1.46907 * 109.46782 * 64.22617 * 3 2 1 14 14 C 1.46903 * 110.99482 * 87.11428 * 13 3 2 15 15 H 1.08995 * 109.47067 * 322.64430 * 14 13 3 16 16 C 1.52995 * 109.47328 * 82.64755 * 14 13 3 17 17 C 1.53000 * 109.46603 * 202.64628 * 14 13 3 18 18 C 1.50701 * 109.47615 * 64.99772 * 17 14 13 19 19 C 1.38233 * 120.00016 * 269.73012 * 18 17 14 20 20 C 1.38234 * 119.99674 * 179.76138 * 19 18 17 21 21 C 1.38236 * 120.00077 * 0.50548 * 20 19 18 22 22 C 1.38235 * 119.99822 * 359.74995 * 21 20 19 23 23 C 1.38226 * 120.00080 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47335 * 55.89044 * 1 2 3 25 25 H 1.08999 * 109.47420 * 295.88402 * 1 2 3 26 26 H 1.09004 * 109.47302 * 175.88502 * 1 2 3 27 27 H 1.09003 * 109.47093 * 119.99837 * 2 1 3 28 28 H 1.08997 * 109.47386 * 240.00004 * 2 1 3 29 29 H 0.96998 * 119.99687 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99612 * 211.06443 * 13 3 2 31 31 H 1.09001 * 109.47433 * 179.97438 * 16 14 13 32 32 H 1.08998 * 109.47147 * 299.99590 * 16 14 13 33 33 H 1.09004 * 109.47500 * 59.99609 * 16 14 13 34 34 H 1.09000 * 109.47387 * 185.00080 * 17 14 13 35 35 H 1.09005 * 109.47370 * 304.99714 * 17 14 13 36 36 H 1.08000 * 119.99874 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.99703 * 180.22606 * 20 19 18 38 38 H 1.08001 * 119.99924 * 179.71784 * 21 20 19 39 39 H 1.08003 * 119.99538 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00159 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 -0.0757 5 6 1.4539 2.1825 -1.1747 6 1 0.8421 3.0574 -1.0112 7 6 1.6987 1.7426 -2.4583 8 7 1.1876 2.3887 -3.4835 9 14 2.7563 0.2291 -2.7412 10 1 1.8951 -0.9806 -2.7567 11 1 3.4596 0.3529 -4.0432 12 1 3.7550 0.1118 -1.6484 13 7 1.6354 2.1049 1.2473 14 6 2.6222 1.8730 2.3105 15 1 3.0104 0.8576 2.2307 16 6 3.7723 2.8715 2.1655 17 6 1.9549 2.0582 3.6748 18 6 0.9034 0.9960 3.8681 19 6 -0.3977 1.2300 3.4643 20 6 -1.3611 0.2538 3.6372 21 6 -1.0256 -0.9523 4.2234 22 6 0.2745 -1.1842 4.6320 23 6 1.2391 -0.2102 4.4540 24 1 -0.3634 0.5763 -0.8509 25 1 -0.3634 0.4486 0.9245 26 1 -0.3634 -1.0250 -0.0737 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.3602 2.0795 -4.3865 30 1 1.4870 3.0921 1.1007 31 1 4.5043 2.6997 2.9547 32 1 4.2477 2.7396 1.1936 33 1 3.3842 3.8870 2.2453 34 1 2.7054 1.9738 4.4608 35 1 1.4895 3.0428 3.7210 36 1 -0.6608 2.1741 3.0106 37 1 -2.3769 0.4352 3.3184 38 1 -1.7793 -1.7132 4.3626 39 1 0.5365 -2.1264 5.0904 40 1 2.2547 -0.3912 4.7736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062174447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = -3.073641 kcal Electronic energy + Delta-G solvation = -18670.694171 eV Core-core repulsion = 16062.995452 eV Total energy + Delta-G solvation = -2607.698719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17663 -38.58868 -35.83782 -33.81338 -32.45429 -31.56104 -30.27953 -28.00462 -27.19178 -25.00028 -23.23828 -22.75171 -21.62698 -20.72154 -18.54222 -17.56342 -17.22209 -16.20988 -15.98617 -15.64973 -15.33977 -14.98859 -14.76148 -14.55616 -14.35130 -14.06542 -13.77112 -13.50208 -13.22850 -12.94064 -12.77288 -12.67351 -12.46602 -12.21854 -12.03006 -11.83833 -11.67007 -11.58080 -11.52356 -11.19439 -10.90225 -10.68639 -9.58228 -9.34519 -8.92111 -8.28042 -6.27886 0.68546 0.74295 1.29065 1.31850 1.40973 2.31158 3.08711 3.09734 3.57105 4.00200 4.17745 4.26155 4.34126 4.39323 4.43020 4.46086 4.56291 4.59152 4.70700 4.75077 4.85063 4.87961 4.97859 5.03092 5.07894 5.17183 5.21168 5.34932 5.38483 5.39269 5.41647 5.52392 5.67767 5.77054 5.79461 5.82863 5.98890 6.10690 6.35704 6.60044 6.74609 6.95507 7.37334 8.88308 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.007558 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.140905 B = 3704.027850 C = 4169.580463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C 0.196 3.804 4 H -0.010 1.010 5 C -0.500 4.500 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.946 5.946 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.255 1.255 13 N -0.662 5.662 14 C 0.087 3.913 15 H 0.060 0.940 16 C -0.175 4.175 17 C -0.061 4.061 18 C -0.070 4.070 19 C -0.101 4.101 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.132 4.132 23 C -0.134 4.134 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.334 0.666 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -5.259 17.450 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.145 4.145 3 C 0.086 3.914 4 H 0.008 0.992 5 C -0.538 4.538 6 H 0.062 0.938 7 C -0.176 4.176 8 N -0.587 5.587 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.228 1.228 12 H -0.180 1.180 13 N -0.292 5.292 14 C -0.024 4.024 15 H 0.079 0.921 16 C -0.234 4.234 17 C -0.099 4.099 18 C -0.070 4.070 19 C -0.119 4.119 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.152 4.152 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.637 -5.769 17.474 18.412 hybrid contribution 0.985 0.086 -1.349 1.672 sum 1.622 -5.683 16.125 17.174 Atomic orbital electron populations 1.21388 0.95202 0.98615 1.02085 1.21645 0.97686 0.97545 0.97639 1.19299 0.92348 0.91775 0.87959 0.99247 1.21272 1.30346 1.11837 0.90371 0.93822 1.25584 0.96754 0.99294 0.96008 1.70022 1.47181 1.42332 0.99131 0.86020 0.79888 0.80829 0.76641 1.19831 1.22841 1.17985 1.60531 1.45483 1.16729 1.06456 1.21588 0.90568 0.98334 0.91879 0.92138 1.22439 0.99486 1.00040 1.01395 1.20599 0.96335 0.97230 0.95722 1.19859 0.94528 0.95665 0.96922 1.21046 0.93172 0.99590 0.98078 1.21319 0.99805 0.94380 0.99764 1.21304 0.97140 0.97397 0.99740 1.21312 0.93372 0.99576 1.00692 1.21230 0.99908 0.93583 1.00494 0.94753 0.91317 0.94845 0.93253 0.95809 0.92762 0.84808 0.90500 0.94684 0.92070 0.89275 0.90904 0.86918 0.85863 0.84999 0.84714 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.52 71.98 0.69 -4.25 16 2 C -0.11 -4.66 5.26 30.59 0.16 -4.50 16 3 C 0.20 8.87 1.70 44.17 0.07 8.95 16 4 H -0.01 -0.47 6.00 -2.39 -0.01 -0.49 16 5 C -0.50 -27.46 7.64 25.60 0.20 -27.26 16 6 H 0.04 2.64 7.83 -2.91 -0.02 2.62 16 7 C 0.02 1.22 5.45 84.65 0.46 1.68 16 8 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 9 Si 0.94 45.83 24.33 68.60 1.67 47.50 16 10 H -0.27 -12.95 6.91 99.48 0.69 -12.27 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 12 H -0.26 -11.77 6.53 99.48 0.65 -11.13 16 13 N -0.66 -24.65 4.94 -473.31 -2.34 -26.99 16 14 C 0.09 2.59 2.39 44.91 0.11 2.70 16 15 H 0.06 1.95 7.26 -2.39 -0.02 1.93 16 16 C -0.17 -4.78 9.14 71.98 0.66 -4.12 16 17 C -0.06 -1.49 5.03 29.85 0.15 -1.34 16 18 C -0.07 -1.87 4.95 -19.87 -0.10 -1.97 16 19 C -0.10 -2.88 8.27 22.27 0.18 -2.69 16 20 C -0.13 -3.57 10.04 22.27 0.22 -3.34 16 21 C -0.14 -3.30 10.05 22.27 0.22 -3.07 16 22 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 23 C -0.13 -3.28 9.70 22.27 0.22 -3.07 16 24 H 0.03 1.67 6.94 -2.39 -0.02 1.65 16 25 H 0.07 2.77 6.75 -2.39 -0.02 2.75 16 26 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.05 1.96 7.52 -2.39 -0.02 1.94 16 28 H 0.02 1.09 3.39 -2.39 -0.01 1.08 16 29 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.33 12.87 7.96 -89.69 -0.71 12.16 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.12 7.28 -2.39 -0.02 1.10 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 35 H 0.07 1.74 8.08 -2.38 -0.02 1.72 16 36 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -62.44 313.06 3.31 -59.13 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.21 Total: 23.79 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 3.47 Total: -45.11 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.04 Total: -85.30 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Total: -62.44 3.31 -59.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.052 kcal (2) G-P(sol) polarization free energy of solvation -62.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds