Wall clock time and date at job start Mon Mar 30 2020 06:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 H 1.09002 * 109.47128 * 305.09843 * 3 2 1 5 5 C 1.50706 * 109.47334 * 185.09874 * 3 2 1 6 6 H 1.07995 * 119.99807 * 240.00216 * 5 3 2 7 7 C 1.37871 * 119.99781 * 60.00057 * 5 3 2 8 8 N 1.31513 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47213 * 119.99867 * 9 7 5 12 12 H 1.48502 * 109.47028 * 239.99804 * 9 7 5 13 13 N 1.46896 * 109.47038 * 65.09851 * 3 2 1 14 14 C 1.46903 * 111.00213 * 206.08807 * 13 3 2 15 15 H 1.09004 * 109.47131 * 323.83400 * 14 13 3 16 16 C 1.53000 * 109.47121 * 83.83216 * 14 13 3 17 17 C 1.53000 * 109.47475 * 203.83269 * 14 13 3 18 18 C 1.50704 * 109.46819 * 64.99930 * 17 14 13 19 19 C 1.38233 * 119.99743 * 90.00591 * 18 17 14 20 20 C 1.38230 * 119.99740 * 179.72533 * 19 18 17 21 21 C 1.38240 * 120.00139 * 0.24909 * 20 19 18 22 22 C 1.38228 * 119.99918 * 0.02562 * 21 20 19 23 23 C 1.38236 * 119.99882 * 270.23418 * 18 17 14 24 24 H 1.08998 * 109.46813 * 303.94383 * 1 2 3 25 25 H 1.08998 * 109.46848 * 63.94236 * 1 2 3 26 26 H 1.08994 * 109.46891 * 183.94073 * 1 2 3 27 27 H 1.09002 * 109.46967 * 240.00534 * 2 1 3 28 28 H 1.08999 * 109.47477 * 119.99927 * 2 1 3 29 29 H 0.96999 * 119.99993 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00101 * 82.13301 * 13 3 2 31 31 H 1.08997 * 109.47141 * 294.98731 * 16 14 13 32 32 H 1.09004 * 109.46860 * 54.98420 * 16 14 13 33 33 H 1.08993 * 109.47464 * 174.98678 * 16 14 13 34 34 H 1.09004 * 109.46923 * 304.99846 * 17 14 13 35 35 H 1.08993 * 109.47299 * 184.99962 * 17 14 13 36 36 H 1.07998 * 119.99987 * 359.97438 * 19 18 17 37 37 H 1.08004 * 120.00420 * 180.27555 * 20 19 18 38 38 H 1.07998 * 119.99765 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00244 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00460 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9820 -0.8408 5 6 3.5418 1.4444 -0.1263 6 1 4.1482 1.8885 0.6491 7 6 4.1413 0.8792 -1.2317 8 7 3.4027 0.3388 -2.1762 9 14 6.0028 0.8810 -1.3879 10 1 6.5984 1.5455 -0.2010 11 1 6.4939 -0.5180 -1.4710 12 1 6.3957 1.6173 -2.6161 13 7 1.6534 2.0985 1.2562 14 6 1.5492 3.5532 1.0801 15 1 2.3196 3.8915 0.3871 16 6 0.1693 3.9014 0.5182 17 6 1.7391 4.2455 2.4313 18 6 3.1415 4.0034 2.9270 19 6 4.1538 4.8840 2.5944 20 6 5.4390 4.6650 3.0538 21 6 5.7130 3.5625 3.8415 22 6 4.7019 2.6788 4.1693 23 6 3.4165 2.8980 3.7103 24 1 -0.3633 0.5738 0.8525 25 1 -0.3633 0.4514 -0.9232 26 1 -0.3633 -1.0252 0.0706 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.8245 -0.0585 -2.9540 30 1 2.2986 1.8693 1.9973 31 1 0.0683 3.4820 -0.4827 32 1 -0.6023 3.4854 1.1661 33 1 0.0590 4.9847 0.4711 34 1 1.0251 3.8424 3.1496 35 1 1.5740 5.3168 2.3170 36 1 3.9397 5.7454 1.9791 37 1 6.2291 5.3555 2.7977 38 1 6.7171 3.3917 4.2007 39 1 4.9159 1.8177 4.7849 40 1 2.6265 2.2078 3.9667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062174450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:21 Heat of formation + Delta-G solvation = 2.879995 kcal Electronic energy + Delta-G solvation = -18572.765256 eV Core-core repulsion = 15965.324706 eV Total energy + Delta-G solvation = -2607.440550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14564 -36.69104 -33.98660 -31.69407 -30.79352 -30.58215 -28.95882 -26.10845 -25.72776 -22.75132 -22.26116 -21.24115 -19.61047 -19.30986 -16.58241 -16.44344 -15.23453 -14.96249 -14.61190 -14.37233 -13.72854 -13.47521 -13.08211 -12.88467 -12.73207 -12.26251 -11.90478 -11.68697 -11.55114 -11.38273 -11.23127 -11.06553 -10.76773 -10.69380 -10.65492 -10.45397 -10.21037 -9.98221 -9.52018 -9.41403 -8.94904 -8.57275 -8.32057 -8.27801 -7.16961 -5.93571 -4.05066 1.71243 1.74582 3.28406 3.36959 3.42236 4.12727 4.44891 5.11920 5.13148 5.28594 5.30306 5.37888 5.41767 5.64110 5.79161 5.83490 5.95024 6.00758 6.17166 6.30701 6.36721 6.38062 6.43192 6.51719 6.56627 6.73832 6.77435 6.78573 6.82667 6.93190 7.01064 7.19742 7.22814 7.35567 7.53058 7.67136 7.85023 8.16904 8.25418 8.42399 8.77630 9.09211 9.62311 11.06521 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.010178 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.312291 B = 2750.454090 C = 3920.998699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.536 4.536 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.687 5.687 14 C 0.092 3.908 15 H 0.046 0.954 16 C -0.134 4.134 17 C -0.083 4.083 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 6.848 9.572 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.711 3.289 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.319 5.319 14 C -0.019 4.019 15 H 0.064 0.936 16 C -0.192 4.192 17 C -0.121 4.121 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.134 4.134 23 C -0.130 4.130 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.585 6.649 9.298 11.540 hybrid contribution 2.207 0.099 -0.399 2.245 sum 0.622 6.748 8.899 11.186 Atomic orbital electron populations 1.21708 0.99088 0.98329 1.00343 1.21491 0.92048 0.99449 1.01481 1.19142 0.92702 0.91077 0.86352 0.95049 1.21922 0.92829 1.37482 1.05294 0.92780 1.24905 0.97597 0.95193 0.95812 1.69889 1.34518 1.38741 1.09426 0.86681 0.86632 0.77668 0.77955 1.19802 1.21057 1.21156 1.61054 1.54914 1.05629 1.10350 1.21296 0.96478 0.90413 0.93730 0.93569 1.21771 0.97195 0.98948 1.01314 1.20861 0.92506 1.00505 0.98178 1.19926 0.95964 0.94737 0.96493 1.20978 0.92892 0.99699 0.99810 1.21045 0.96544 0.97942 0.98318 1.21038 0.98814 0.95419 0.99549 1.21082 0.93248 0.98922 1.00195 1.21060 0.96947 0.96962 0.98019 0.93126 0.94621 0.95808 0.89272 0.95346 0.93104 0.85139 0.92676 0.92717 0.93891 0.90770 0.91367 0.86539 0.86687 0.86753 0.86437 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.85 37.16 0.37 -2.50 16 2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.34 1.78 -68.86 -0.12 5.21 16 4 H 0.03 0.87 7.07 -51.93 -0.37 0.50 16 5 C -0.54 -14.62 8.31 -34.44 -0.29 -14.91 16 6 H 0.05 1.51 7.72 -52.49 -0.41 1.11 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.37 11.29 55.43 0.63 -24.74 16 9 Si 0.88 21.66 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.69 -14.34 5.44 -100.95 -0.55 -14.89 16 14 C 0.09 1.69 2.45 -67.71 -0.17 1.53 16 15 H 0.05 0.99 7.69 -51.93 -0.40 0.60 16 16 C -0.13 -2.23 9.36 37.16 0.35 -1.89 16 17 C -0.08 -1.27 4.98 -27.88 -0.14 -1.40 16 18 C -0.07 -1.15 4.84 -104.62 -0.51 -1.66 16 19 C -0.12 -1.82 9.70 -39.59 -0.38 -2.21 16 20 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 21 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 22 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.11 -1.78 8.03 -39.58 -0.32 -2.10 16 24 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.88 5.17 -39.29 -0.20 6.68 16 31 H 0.05 1.01 7.43 -51.93 -0.39 0.62 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.12 1.85 7.54 -52.49 -0.40 1.45 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -28.63 321.42 -9.38 -38.01 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.64 Total: 7.71 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -2.64 Total: -27.57 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.08 Total: -39.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.63 -9.38 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.890 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds