Wall clock time and date at job start Mon Mar 30 2020 06:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 H 1.09002 * 109.47128 * 305.09843 * 3 2 1 5 5 C 1.50706 * 109.47334 * 185.09874 * 3 2 1 6 6 H 1.07995 * 119.99807 * 240.00216 * 5 3 2 7 7 C 1.37871 * 119.99781 * 60.00057 * 5 3 2 8 8 N 1.31513 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47213 * 119.99867 * 9 7 5 12 12 H 1.48502 * 109.47028 * 239.99804 * 9 7 5 13 13 N 1.46896 * 109.47038 * 65.09851 * 3 2 1 14 14 C 1.46903 * 111.00213 * 206.08807 * 13 3 2 15 15 H 1.09004 * 109.47131 * 323.83400 * 14 13 3 16 16 C 1.53000 * 109.47121 * 83.83216 * 14 13 3 17 17 C 1.53000 * 109.47475 * 203.83269 * 14 13 3 18 18 C 1.50704 * 109.46819 * 64.99930 * 17 14 13 19 19 C 1.38233 * 119.99743 * 90.00591 * 18 17 14 20 20 C 1.38230 * 119.99740 * 179.72533 * 19 18 17 21 21 C 1.38240 * 120.00139 * 0.24909 * 20 19 18 22 22 C 1.38228 * 119.99918 * 0.02562 * 21 20 19 23 23 C 1.38236 * 119.99882 * 270.23418 * 18 17 14 24 24 H 1.08998 * 109.46813 * 303.94383 * 1 2 3 25 25 H 1.08998 * 109.46848 * 63.94236 * 1 2 3 26 26 H 1.08994 * 109.46891 * 183.94073 * 1 2 3 27 27 H 1.09002 * 109.46967 * 240.00534 * 2 1 3 28 28 H 1.08999 * 109.47477 * 119.99927 * 2 1 3 29 29 H 0.96999 * 119.99993 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00101 * 82.13301 * 13 3 2 31 31 H 1.08997 * 109.47141 * 294.98731 * 16 14 13 32 32 H 1.09004 * 109.46860 * 54.98420 * 16 14 13 33 33 H 1.08993 * 109.47464 * 174.98678 * 16 14 13 34 34 H 1.09004 * 109.46923 * 304.99846 * 17 14 13 35 35 H 1.08993 * 109.47299 * 184.99962 * 17 14 13 36 36 H 1.07998 * 119.99987 * 359.97438 * 19 18 17 37 37 H 1.08004 * 120.00420 * 180.27555 * 20 19 18 38 38 H 1.07998 * 119.99765 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00244 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00460 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9820 -0.8408 5 6 3.5418 1.4444 -0.1263 6 1 4.1482 1.8885 0.6491 7 6 4.1413 0.8792 -1.2317 8 7 3.4027 0.3388 -2.1762 9 14 6.0028 0.8810 -1.3879 10 1 6.5984 1.5455 -0.2010 11 1 6.4939 -0.5180 -1.4710 12 1 6.3957 1.6173 -2.6161 13 7 1.6534 2.0985 1.2562 14 6 1.5492 3.5532 1.0801 15 1 2.3196 3.8915 0.3871 16 6 0.1693 3.9014 0.5182 17 6 1.7391 4.2455 2.4313 18 6 3.1415 4.0034 2.9270 19 6 4.1538 4.8840 2.5944 20 6 5.4390 4.6650 3.0538 21 6 5.7130 3.5625 3.8415 22 6 4.7019 2.6788 4.1693 23 6 3.4165 2.8980 3.7103 24 1 -0.3633 0.5738 0.8525 25 1 -0.3633 0.4514 -0.9232 26 1 -0.3633 -1.0252 0.0706 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.8245 -0.0585 -2.9540 30 1 2.2986 1.8693 1.9973 31 1 0.0683 3.4820 -0.4827 32 1 -0.6023 3.4854 1.1661 33 1 0.0590 4.9847 0.4711 34 1 1.0251 3.8424 3.1496 35 1 1.5740 5.3168 2.3170 36 1 3.9397 5.7454 1.9791 37 1 6.2291 5.3555 2.7977 38 1 6.7171 3.3917 4.2007 39 1 4.9159 1.8177 4.7849 40 1 2.6265 2.2078 3.9667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062174450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:21 Heat of formation + Delta-G solvation = -11.691118 kcal Electronic energy + Delta-G solvation = -18573.397107 eV Core-core repulsion = 15965.324706 eV Total energy + Delta-G solvation = -2608.072401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36697 -38.31306 -35.70164 -33.62002 -32.22750 -31.74145 -30.58464 -27.82343 -27.23329 -24.64726 -23.44167 -22.52422 -21.27124 -20.98036 -18.64588 -17.61242 -16.90787 -16.44205 -16.13544 -15.77715 -15.40958 -14.96232 -14.65749 -14.26793 -14.21170 -13.74059 -13.32522 -13.25611 -13.13414 -13.04134 -12.84230 -12.74783 -12.50083 -12.41737 -12.05091 -11.93333 -11.73385 -11.54488 -11.42157 -11.29495 -10.90598 -10.43559 -9.74970 -9.49384 -8.97798 -8.03456 -6.24026 0.53069 0.56932 1.32465 1.35725 1.46076 2.39335 2.94214 3.15640 3.74453 3.92773 4.05490 4.20945 4.26097 4.31968 4.55987 4.59932 4.66678 4.69173 4.74657 4.80775 4.90355 4.93094 5.03798 5.08701 5.17836 5.22059 5.25569 5.34856 5.45640 5.48056 5.57942 5.63898 5.66605 5.68536 5.78785 5.83717 6.15998 6.20387 6.27042 6.46948 6.91304 7.10034 7.46874 8.92610 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.010178 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.312291 B = 2750.454090 C = 3920.998699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.043 0.957 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.677 5.677 14 C 0.090 3.910 15 H 0.010 0.990 16 C -0.128 4.128 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.128 4.128 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 7.419 10.753 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.061 0.939 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.309 5.309 14 C -0.020 4.020 15 H 0.029 0.971 16 C -0.186 4.186 17 C -0.110 4.110 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.393 7.227 10.489 12.814 hybrid contribution 2.165 -0.052 -0.751 2.292 sum 0.771 7.175 9.739 12.121 Atomic orbital electron populations 1.21559 0.96313 0.99824 1.00477 1.21361 0.94523 0.98598 0.99726 1.18875 0.91212 0.91342 0.86968 0.98313 1.22140 0.94191 1.37081 1.04989 0.93857 1.25579 1.01462 0.95119 0.95703 1.70007 1.35968 1.39315 1.09790 0.85775 0.82021 0.77736 0.77769 1.19749 1.20510 1.20821 1.61015 1.54249 1.07189 1.08464 1.21360 0.96496 0.88999 0.95150 0.97147 1.21714 0.96190 1.00799 0.99864 1.20779 0.92543 1.01498 0.96143 1.20113 0.96527 0.95206 0.97056 1.21262 0.93367 1.00240 1.00188 1.21399 0.96917 0.98499 0.98078 1.21410 0.99927 0.95136 0.99214 1.21416 0.93130 0.99714 1.00342 1.21258 0.97656 0.97178 0.98470 0.92028 0.95216 0.93747 0.92309 0.95679 0.93062 0.85056 0.95168 0.91537 0.91042 0.89541 0.89128 0.85494 0.84597 0.84449 0.84565 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.85 71.98 0.71 -4.37 16 2 C -0.10 -5.06 5.45 30.59 0.17 -4.89 16 3 C 0.23 11.35 1.78 44.17 0.08 11.43 16 4 H 0.00 -0.06 7.07 -2.39 -0.02 -0.08 16 5 C -0.54 -30.17 8.31 25.60 0.21 -29.96 16 6 H 0.04 2.45 7.72 -2.91 -0.02 2.42 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -53.01 11.29 21.44 0.24 -52.77 16 9 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.68 -28.15 5.44 -473.29 -2.58 -30.73 16 14 C 0.09 3.30 2.45 44.91 0.11 3.41 16 15 H 0.01 0.46 7.69 -2.39 -0.02 0.44 16 16 C -0.13 -4.10 9.36 71.98 0.67 -3.43 16 17 C -0.07 -2.09 4.98 29.85 0.15 -1.94 16 18 C -0.09 -2.79 4.84 -19.86 -0.10 -2.89 16 19 C -0.13 -4.03 9.70 22.27 0.22 -3.82 16 20 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 21 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 22 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 23 C -0.13 -3.95 8.03 22.27 0.18 -3.77 16 24 H 0.06 2.36 7.65 -2.39 -0.02 2.34 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 3.25 5.95 -2.39 -0.01 3.24 16 28 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.33 13.70 5.17 -89.69 -0.46 13.23 16 31 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 32 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.09 2.29 8.09 -2.38 -0.02 2.28 16 35 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 36 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 38 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.13 3.71 7.54 -2.91 -0.02 3.69 16 Total: -1.00 -61.52 321.42 3.74 -57.78 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.53 Total: 28.23 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.52 Total: -49.24 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.33 Total: -83.49 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.52 3.74 -57.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.088 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds