Wall clock time and date at job start Mon Mar 30 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47505 * 2 1 4 4 H 1.09007 * 109.46944 * 55.79617 * 3 2 1 5 5 C 1.50699 * 109.47591 * 175.79504 * 3 2 1 6 6 H 1.07997 * 120.00476 * 119.99827 * 5 3 2 7 7 C 1.37880 * 119.99757 * 300.00252 * 5 3 2 8 8 N 1.31510 * 120.00088 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99752 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46853 * 59.99875 * 9 7 5 11 11 H 1.48498 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47004 * 299.99976 * 9 7 5 13 13 N 1.46903 * 109.47139 * 295.79891 * 3 2 1 14 14 C 1.46903 * 111.00076 * 154.45055 * 13 3 2 15 15 H 1.09002 * 109.46845 * 37.26662 * 14 13 3 16 16 C 1.52997 * 109.46978 * 277.26676 * 14 13 3 17 17 C 1.52997 * 109.46935 * 157.26857 * 14 13 3 18 18 C 1.50702 * 109.47031 * 294.99706 * 17 14 13 19 19 C 1.38241 * 120.00128 * 269.73075 * 18 17 14 20 20 C 1.38236 * 119.99927 * 179.77003 * 19 18 17 21 21 C 1.38236 * 119.99940 * 0.49839 * 20 19 18 22 22 C 1.38231 * 120.00184 * 359.75457 * 21 20 19 23 23 C 1.38238 * 120.00016 * 90.00358 * 18 17 14 24 24 H 1.09004 * 109.47417 * 185.40392 * 1 2 3 25 25 H 1.08995 * 109.47155 * 305.41070 * 1 2 3 26 26 H 1.09004 * 109.46904 * 65.41249 * 1 2 3 27 27 H 1.09002 * 109.47653 * 239.99223 * 2 1 3 28 28 H 1.09001 * 109.46944 * 120.00230 * 2 1 3 29 29 H 0.96999 * 119.99899 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99490 * 278.40391 * 13 3 2 31 31 H 1.08999 * 109.47206 * 57.08374 * 16 14 13 32 32 H 1.09000 * 109.47135 * 297.08626 * 16 14 13 33 33 H 1.08994 * 109.47307 * 177.08892 * 16 14 13 34 34 H 1.08997 * 109.47581 * 54.99702 * 17 14 13 35 35 H 1.09002 * 109.46936 * 175.00084 * 17 14 13 36 36 H 1.08003 * 119.99552 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.99514 * 180.23296 * 20 19 18 38 38 H 1.08004 * 119.99570 * 179.72950 * 21 20 19 39 39 H 1.07994 * 120.00103 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.99841 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6165 1.9776 0.8500 5 6 3.5434 1.4437 0.1042 6 1 4.1386 1.8918 -0.6777 7 6 4.1591 0.8727 1.1977 8 7 3.4344 0.3273 2.1501 9 14 6.0227 0.8736 1.3265 10 1 6.5181 2.2735 1.3262 11 1 6.4321 0.2045 2.5874 12 1 6.5993 0.1442 0.1686 13 7 1.6350 2.1050 -1.2470 14 6 1.5459 3.5600 -1.0651 15 1 2.3441 3.8927 -0.4014 16 6 0.1905 3.9151 -0.4507 17 6 1.6884 4.2532 -2.4216 18 6 3.0695 4.0038 -2.9705 19 6 4.0976 4.8812 -2.6801 20 6 5.3655 4.6499 -3.1797 21 6 5.6032 3.5468 -3.9783 22 6 4.5740 2.6723 -4.2730 23 6 3.3072 2.9008 -3.7691 24 1 -0.3634 -1.0231 0.0968 25 1 -0.3633 0.5954 0.8375 26 1 -0.3633 0.4276 -0.9345 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8676 -0.0741 2.9196 30 1 2.2642 1.8727 -2.0007 31 1 0.0672 3.3806 0.4911 32 1 -0.6060 3.6291 -1.1378 33 1 0.1444 4.9887 -0.2680 34 1 0.9454 3.8553 -3.1128 35 1 1.5339 5.3253 -2.2997 36 1 3.9107 5.7456 -2.0601 37 1 6.1695 5.3334 -2.9497 38 1 6.5929 3.3685 -4.3722 39 1 4.7596 1.8108 -4.8972 40 1 2.5029 2.2180 -4.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062174453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:24 Heat of formation + Delta-G solvation = 2.611686 kcal Electronic energy + Delta-G solvation = -18559.632175 eV Core-core repulsion = 15952.179990 eV Total energy + Delta-G solvation = -2607.452185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14870 -36.69584 -33.98558 -31.69736 -30.80183 -30.58846 -28.95055 -26.11690 -25.72524 -22.75287 -22.26738 -21.24728 -19.61041 -19.30135 -16.58341 -16.44812 -15.24207 -14.96508 -14.61664 -14.38501 -13.73502 -13.47733 -13.08866 -12.87612 -12.72455 -12.27123 -11.89995 -11.68424 -11.55204 -11.38255 -11.21332 -11.04900 -10.79883 -10.67673 -10.65743 -10.49380 -10.21805 -9.98413 -9.51908 -9.42637 -8.96084 -8.58167 -8.32081 -8.28339 -7.16394 -5.93357 -4.04976 1.70344 1.73581 3.31301 3.35796 3.39521 4.11827 4.44756 5.11499 5.12754 5.28501 5.29842 5.37563 5.41149 5.65162 5.78556 5.82704 5.94817 6.00466 6.16978 6.30863 6.36014 6.37419 6.44122 6.51496 6.54614 6.74300 6.77009 6.78216 6.81829 6.93226 7.00785 7.19749 7.22059 7.34683 7.52682 7.66885 7.84667 8.16415 8.25733 8.42368 8.77539 9.08787 9.62226 11.06711 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.010055 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.428017 B = 2783.898456 C = 3932.471299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.092 3.908 15 H 0.046 0.954 16 C -0.134 4.134 17 C -0.082 4.082 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.112 4.112 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 6.815 -9.555 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.319 5.319 14 C -0.019 4.019 15 H 0.064 0.936 16 C -0.192 4.192 17 C -0.120 4.120 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.130 4.130 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.778 6.614 -9.259 11.517 hybrid contribution 2.225 0.117 0.321 2.251 sum 0.447 6.731 -8.938 11.198 Atomic orbital electron populations 1.21680 0.99046 0.98121 1.00332 1.21493 0.92027 0.99446 1.01522 1.19144 0.92509 0.90971 0.86588 0.95013 1.21847 0.92786 1.37464 1.05630 0.92936 1.24902 0.97632 0.95165 0.95736 1.69866 1.34786 1.38349 1.09569 0.86784 0.86592 0.78170 0.77244 1.20450 1.21328 1.20323 1.61056 1.55632 1.05365 1.09881 1.21288 0.96656 0.90416 0.93549 0.93602 1.21765 0.97218 0.99083 1.01142 1.20855 0.92828 1.00490 0.97839 1.19934 0.96014 0.94730 0.96402 1.20991 0.92915 0.99676 0.99853 1.21049 0.96721 0.97909 0.98166 1.21042 0.98755 0.95492 0.99591 1.21087 0.93243 0.98948 1.00165 1.21068 0.97215 0.97007 0.97735 0.95832 0.94502 0.93494 0.95313 0.89276 0.92976 0.85166 0.92436 0.92941 0.93921 0.90762 0.91371 0.86536 0.86670 0.86729 0.86427 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.73 37.15 0.36 -2.44 16 2 C -0.11 -2.58 5.44 -26.74 -0.15 -2.73 16 3 C 0.22 5.35 1.79 -68.87 -0.12 5.23 16 4 H 0.03 0.87 6.93 -51.93 -0.36 0.51 16 5 C -0.54 -14.69 8.28 -34.44 -0.29 -14.98 16 6 H 0.05 1.46 7.73 -52.49 -0.41 1.06 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.89 -25.36 11.30 55.43 0.63 -24.73 16 9 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.69 -14.35 5.57 -100.95 -0.56 -14.91 16 14 C 0.09 1.70 2.46 -67.71 -0.17 1.53 16 15 H 0.05 0.99 7.68 -51.93 -0.40 0.59 16 16 C -0.13 -2.24 9.39 37.16 0.35 -1.89 16 17 C -0.08 -1.26 4.99 -27.88 -0.14 -1.40 16 18 C -0.07 -1.14 4.83 -104.62 -0.50 -1.65 16 19 C -0.12 -1.82 9.70 -39.58 -0.38 -2.21 16 20 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 21 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 22 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.11 -1.78 8.02 -39.58 -0.32 -2.10 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.33 6.89 5.24 -39.29 -0.21 6.68 16 31 H 0.06 1.07 7.23 -51.93 -0.38 0.69 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.12 1.84 7.58 -52.49 -0.40 1.45 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -28.53 321.46 -9.40 -37.93 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.64 Total: 7.68 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -2.64 Total: -27.47 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.06 Total: -39.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.53 -9.40 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.537 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds