Wall clock time and date at job start Mon Mar 30 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47505 * 2 1 4 4 H 1.09007 * 109.46944 * 55.79617 * 3 2 1 5 5 C 1.50699 * 109.47591 * 175.79504 * 3 2 1 6 6 H 1.07997 * 120.00476 * 119.99827 * 5 3 2 7 7 C 1.37880 * 119.99757 * 300.00252 * 5 3 2 8 8 N 1.31510 * 120.00088 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99752 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46853 * 59.99875 * 9 7 5 11 11 H 1.48498 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47004 * 299.99976 * 9 7 5 13 13 N 1.46903 * 109.47139 * 295.79891 * 3 2 1 14 14 C 1.46903 * 111.00076 * 154.45055 * 13 3 2 15 15 H 1.09002 * 109.46845 * 37.26662 * 14 13 3 16 16 C 1.52997 * 109.46978 * 277.26676 * 14 13 3 17 17 C 1.52997 * 109.46935 * 157.26857 * 14 13 3 18 18 C 1.50702 * 109.47031 * 294.99706 * 17 14 13 19 19 C 1.38241 * 120.00128 * 269.73075 * 18 17 14 20 20 C 1.38236 * 119.99927 * 179.77003 * 19 18 17 21 21 C 1.38236 * 119.99940 * 0.49839 * 20 19 18 22 22 C 1.38231 * 120.00184 * 359.75457 * 21 20 19 23 23 C 1.38238 * 120.00016 * 90.00358 * 18 17 14 24 24 H 1.09004 * 109.47417 * 185.40392 * 1 2 3 25 25 H 1.08995 * 109.47155 * 305.41070 * 1 2 3 26 26 H 1.09004 * 109.46904 * 65.41249 * 1 2 3 27 27 H 1.09002 * 109.47653 * 239.99223 * 2 1 3 28 28 H 1.09001 * 109.46944 * 120.00230 * 2 1 3 29 29 H 0.96999 * 119.99899 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99490 * 278.40391 * 13 3 2 31 31 H 1.08999 * 109.47206 * 57.08374 * 16 14 13 32 32 H 1.09000 * 109.47135 * 297.08626 * 16 14 13 33 33 H 1.08994 * 109.47307 * 177.08892 * 16 14 13 34 34 H 1.08997 * 109.47581 * 54.99702 * 17 14 13 35 35 H 1.09002 * 109.46936 * 175.00084 * 17 14 13 36 36 H 1.08003 * 119.99552 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.99514 * 180.23296 * 20 19 18 38 38 H 1.08004 * 119.99570 * 179.72950 * 21 20 19 39 39 H 1.07994 * 120.00103 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.99841 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6165 1.9776 0.8500 5 6 3.5434 1.4437 0.1042 6 1 4.1386 1.8918 -0.6777 7 6 4.1591 0.8727 1.1977 8 7 3.4344 0.3273 2.1501 9 14 6.0227 0.8736 1.3265 10 1 6.5181 2.2735 1.3262 11 1 6.4321 0.2045 2.5874 12 1 6.5993 0.1442 0.1686 13 7 1.6350 2.1050 -1.2470 14 6 1.5459 3.5600 -1.0651 15 1 2.3441 3.8927 -0.4014 16 6 0.1905 3.9151 -0.4507 17 6 1.6884 4.2532 -2.4216 18 6 3.0695 4.0038 -2.9705 19 6 4.0976 4.8812 -2.6801 20 6 5.3655 4.6499 -3.1797 21 6 5.6032 3.5468 -3.9783 22 6 4.5740 2.6723 -4.2730 23 6 3.3072 2.9008 -3.7691 24 1 -0.3634 -1.0231 0.0968 25 1 -0.3633 0.5954 0.8375 26 1 -0.3633 0.4276 -0.9345 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8676 -0.0741 2.9196 30 1 2.2642 1.8727 -2.0007 31 1 0.0672 3.3806 0.4911 32 1 -0.6060 3.6291 -1.1378 33 1 0.1444 4.9887 -0.2680 34 1 0.9454 3.8553 -3.1128 35 1 1.5339 5.3253 -2.2997 36 1 3.9107 5.7456 -2.0601 37 1 6.1695 5.3334 -2.9497 38 1 6.5929 3.3685 -4.3722 39 1 4.7596 1.8108 -4.8972 40 1 2.5029 2.2180 -4.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062174453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:23 Heat of formation + Delta-G solvation = -11.923585 kcal Electronic energy + Delta-G solvation = -18560.262472 eV Core-core repulsion = 15952.179990 eV Total energy + Delta-G solvation = -2608.082482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36343 -38.31827 -35.69882 -33.62257 -32.23298 -31.73929 -30.57627 -27.82661 -27.23590 -24.64722 -23.43909 -22.52683 -21.27363 -20.96855 -18.64581 -17.60877 -16.90949 -16.45219 -16.13393 -15.78475 -15.41105 -14.95166 -14.65970 -14.25714 -14.20830 -13.74497 -13.32231 -13.23844 -13.12728 -13.04502 -12.82124 -12.75782 -12.49989 -12.43706 -12.06775 -11.94029 -11.73777 -11.54622 -11.41419 -11.30675 -10.91396 -10.43186 -9.75028 -9.49552 -8.97408 -8.03250 -6.23971 0.53067 0.56799 1.35120 1.35578 1.43254 2.39348 2.94179 3.15711 3.74149 3.92871 4.05624 4.21038 4.26681 4.32180 4.55906 4.59713 4.67061 4.69001 4.74904 4.78997 4.90086 4.93311 5.03487 5.08701 5.18062 5.22005 5.25655 5.34697 5.45415 5.47720 5.57392 5.63971 5.66590 5.68192 5.78628 5.83497 6.15986 6.20319 6.26841 6.46649 6.91074 7.09777 7.46775 8.92494 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.010055 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.428017 B = 2783.898456 C = 3932.471299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.225 3.775 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.042 0.958 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.091 3.909 15 H 0.010 0.990 16 C -0.128 4.128 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.128 4.128 24 H 0.042 0.958 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 7.376 -10.763 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.061 0.939 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.020 4.020 15 H 0.028 0.972 16 C -0.186 4.186 17 C -0.109 4.109 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.567 7.184 -10.478 12.801 hybrid contribution 2.175 -0.031 0.680 2.279 sum 0.608 7.153 -9.799 12.147 Atomic orbital electron populations 1.21528 0.96247 0.99386 1.00704 1.21362 0.94519 0.98581 0.99745 1.18881 0.91056 0.91267 0.87158 0.98240 1.22083 0.94190 1.37080 1.05343 0.93944 1.25576 1.01520 0.95074 0.95606 1.69989 1.36192 1.38911 1.09911 0.85893 0.81988 0.78093 0.77389 1.20303 1.20773 1.19858 1.61015 1.54929 1.06889 1.08049 1.21351 0.96498 0.89028 0.95108 0.97208 1.21708 0.96440 1.00459 0.99964 1.20768 0.92962 1.01442 0.95745 1.20114 0.96549 0.95239 0.97007 1.21267 0.93389 1.00199 1.00256 1.21402 0.97085 0.98465 0.97909 1.21413 0.99829 0.95157 0.99238 1.21419 0.93111 0.99736 1.00304 1.21261 0.97936 0.97203 0.98186 0.93912 0.95099 0.92236 0.95712 0.92291 0.93017 0.85090 0.95029 0.91410 0.91352 0.89553 0.89181 0.85553 0.84583 0.84367 0.84557 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.73 71.98 0.70 -4.24 16 2 C -0.10 -5.06 5.44 30.59 0.17 -4.89 16 3 C 0.23 11.38 1.79 44.17 0.08 11.46 16 4 H 0.00 -0.02 6.93 -2.38 -0.02 -0.04 16 5 C -0.55 -30.37 8.28 25.60 0.21 -30.16 16 6 H 0.04 2.39 7.73 -2.91 -0.02 2.37 16 7 C 0.02 1.23 5.29 84.66 0.45 1.68 16 8 N -0.91 -52.97 11.30 21.45 0.24 -52.73 16 9 Si 0.94 44.66 29.54 68.60 2.03 46.68 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.68 -28.19 5.57 -473.31 -2.63 -30.83 16 14 C 0.09 3.32 2.46 44.91 0.11 3.43 16 15 H 0.01 0.43 7.68 -2.39 -0.02 0.41 16 16 C -0.13 -4.13 9.39 71.98 0.68 -3.46 16 17 C -0.07 -2.08 4.99 29.85 0.15 -1.93 16 18 C -0.09 -2.78 4.83 -19.86 -0.10 -2.88 16 19 C -0.13 -4.03 9.70 22.27 0.22 -3.81 16 20 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 21 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 22 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 23 C -0.13 -3.93 8.02 22.27 0.18 -3.75 16 24 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 26 H 0.06 2.26 7.88 -2.38 -0.02 2.24 16 27 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 3.25 5.97 -2.39 -0.01 3.24 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.33 13.72 5.24 -89.69 -0.47 13.25 16 31 H 0.03 1.16 7.23 -2.39 -0.02 1.15 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 35 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 36 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 39 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 40 H 0.13 3.69 7.58 -2.91 -0.02 3.67 16 Total: -1.00 -61.32 321.46 3.67 -57.66 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.52 Total: 28.24 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 3.51 Total: -49.02 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.39 Total: -83.56 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.32 3.67 -57.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.734 kcal (2) G-P(sol) polarization free energy of solvation -61.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds