Wall clock time and date at job start Mon Mar 30 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 H 1.09007 * 109.46481 * 305.61694 * 3 2 1 5 5 C 1.50703 * 109.46961 * 185.62485 * 3 2 1 6 6 H 1.07994 * 119.99770 * 245.65802 * 5 3 2 7 7 C 1.37872 * 120.00221 * 65.66292 * 5 3 2 8 8 N 1.31512 * 120.00310 * 194.56841 * 7 5 3 9 9 Si 1.86807 * 120.00018 * 14.56805 * 7 5 3 10 10 H 1.48506 * 109.47155 * 87.22739 * 9 7 5 11 11 H 1.48504 * 109.46938 * 207.22503 * 9 7 5 12 12 H 1.48500 * 109.47302 * 327.22741 * 9 7 5 13 13 N 1.46898 * 109.47665 * 65.61977 * 3 2 1 14 14 C 1.46899 * 110.99961 * 256.42658 * 13 3 2 15 15 H 1.08997 * 109.47228 * 42.82445 * 14 13 3 16 16 C 1.53001 * 109.46934 * 282.82842 * 14 13 3 17 17 C 1.52997 * 109.47204 * 162.83132 * 14 13 3 18 18 C 1.50702 * 109.47107 * 294.99714 * 17 14 13 19 19 C 1.38234 * 119.99705 * 269.73033 * 18 17 14 20 20 C 1.38235 * 119.99711 * 179.76675 * 19 18 17 21 21 C 1.38240 * 120.00062 * 0.50115 * 20 19 18 22 22 C 1.38233 * 119.99719 * 359.74662 * 21 20 19 23 23 C 1.38231 * 120.00009 * 89.99779 * 18 17 14 24 24 H 1.08997 * 109.47099 * 176.11524 * 1 2 3 25 25 H 1.09002 * 109.47467 * 296.12178 * 1 2 3 26 26 H 1.09007 * 109.46460 * 56.11729 * 1 2 3 27 27 H 1.09003 * 109.46539 * 119.99127 * 2 1 3 28 28 H 1.08996 * 109.47343 * 239.98946 * 2 1 3 29 29 H 0.96997 * 120.00435 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99731 * 20.37264 * 13 3 2 31 31 H 1.08997 * 109.47132 * 59.99989 * 16 14 13 32 32 H 1.09000 * 109.47524 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.46939 * 300.00174 * 16 14 13 34 34 H 1.09006 * 109.47331 * 54.99202 * 17 14 13 35 35 H 1.08994 * 109.47283 * 174.99589 * 17 14 13 36 36 H 1.07996 * 120.00501 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.00263 * 180.22995 * 20 19 18 38 38 H 1.07995 * 120.00092 * 179.72891 * 21 20 19 39 39 H 1.08006 * 119.99536 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00571 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9845 -0.8355 5 6 3.5406 1.4447 -0.1393 6 1 4.1576 1.8029 0.6715 7 6 4.1258 0.9895 -1.3017 8 7 5.4126 0.7196 -1.3282 9 14 3.0907 0.7559 -2.8391 10 1 3.0302 2.0335 -3.5939 11 1 3.7018 -0.2946 -3.6924 12 1 1.7173 0.3434 -2.4533 13 7 1.6643 2.0948 1.2614 14 6 0.5278 3.0047 1.0654 15 1 -0.2129 2.5278 0.4236 16 6 1.0165 4.2967 0.4074 17 6 -0.1046 3.3299 2.4201 18 6 -0.6951 2.0765 3.0127 19 6 -2.0089 1.7387 2.7466 20 6 -2.5491 0.5864 3.2863 21 6 -1.7787 -0.2227 4.1004 22 6 -0.4665 0.1178 4.3706 23 6 0.0753 1.2674 3.8268 24 1 -0.3633 -1.0253 -0.0696 25 1 -0.3634 0.4525 0.9227 26 1 -0.3632 0.5730 -0.8532 27 1 1.8932 -0.5137 0.8901 28 1 1.8934 -0.5140 -0.8898 29 1 5.8243 0.3990 -2.1459 30 1 1.4614 1.4114 1.9754 31 1 1.4671 4.0650 -0.5576 32 1 0.1734 4.9721 0.2624 33 1 1.7574 4.7736 1.0492 34 1 0.6578 3.7250 3.0916 35 1 -0.8904 4.0731 2.2851 36 1 -2.6122 2.3732 2.1144 37 1 -3.5744 0.3204 3.0754 38 1 -2.2020 -1.1207 4.5256 39 1 0.1353 -0.5141 5.0070 40 1 1.1003 1.5338 4.0385 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062174457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:26 Heat of formation + Delta-G solvation = 12.399836 kcal Electronic energy + Delta-G solvation = -18634.148972 eV Core-core repulsion = 16027.121234 eV Total energy + Delta-G solvation = -2607.027739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.44663 -37.15605 -34.10591 -31.93810 -31.13884 -30.80481 -28.95448 -26.78298 -26.08608 -22.55380 -22.49170 -21.47742 -19.91260 -19.63827 -16.77608 -16.54639 -15.58967 -15.13778 -14.88808 -14.64772 -13.91165 -13.57956 -13.33429 -13.29147 -12.72251 -12.65005 -12.32954 -11.87197 -11.82200 -11.63910 -11.50508 -11.32851 -10.91698 -10.80655 -10.72950 -10.56829 -10.51360 -10.13407 -9.83736 -9.39231 -9.21705 -8.80764 -8.52993 -8.31909 -7.24999 -6.00050 -3.91252 1.46432 1.50031 3.31358 3.40222 3.42592 3.88788 4.48572 4.90339 4.92064 5.07026 5.11119 5.21897 5.27218 5.46968 5.57889 5.62349 5.74317 5.80358 5.88202 5.93637 6.00335 6.11247 6.15669 6.16701 6.23905 6.31571 6.53014 6.55264 6.59709 6.61234 6.66472 6.77722 6.84915 6.88975 6.99732 7.12039 7.26750 7.85511 8.05152 8.46856 8.80761 9.17293 9.67225 11.13637 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.006951 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.528310 B = 4027.375645 C = 4291.854540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.494 4.494 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.255 1.255 13 N -0.669 5.669 14 C 0.087 3.913 15 H 0.034 0.966 16 C -0.138 4.138 17 C -0.084 4.084 18 C -0.075 4.075 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.114 4.114 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 1.351 8.346 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.084 3.916 4 H 0.040 0.960 5 C -0.532 4.532 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.179 1.179 13 N -0.302 5.302 14 C -0.024 4.024 15 H 0.052 0.948 16 C -0.196 4.196 17 C -0.121 4.121 18 C -0.075 4.075 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.134 4.134 23 C -0.132 4.132 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.728 1.788 8.168 16.936 hybrid contribution -1.178 -0.966 -1.171 1.922 sum -15.906 0.822 6.997 17.397 Atomic orbital electron populations 1.21963 0.98513 1.00015 1.00778 1.22592 0.92774 1.01702 1.01772 1.19561 0.96544 0.88101 0.87346 0.96011 1.21011 0.89230 1.41028 1.01950 0.90252 1.24898 0.94664 0.94956 0.98554 1.69959 1.11053 1.45059 1.27549 0.87349 0.82050 0.77965 0.84311 1.20681 1.21623 1.17911 1.60784 1.35642 1.23301 1.10433 1.21498 0.92177 0.95092 0.93630 0.94836 1.21783 1.00111 0.96041 1.01620 1.20852 0.99834 0.94003 0.97441 1.19998 0.93757 0.97072 0.96658 1.21019 0.95140 0.97410 1.00239 1.21069 0.99638 0.95148 0.98061 1.21081 0.94644 0.99673 0.99386 1.21159 0.95350 0.96996 0.99919 1.21200 0.99992 0.94805 0.97222 0.94289 0.93032 0.93944 0.92687 0.92111 0.92904 0.85159 0.92084 0.93874 0.92048 0.90111 0.91092 0.86500 0.86582 0.86578 0.86188 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.72 37.16 0.32 -2.55 16 2 C -0.15 -3.27 4.54 -26.73 -0.12 -3.39 16 3 C 0.19 4.53 1.42 -68.86 -0.10 4.43 16 4 H 0.02 0.53 5.41 -51.93 -0.28 0.25 16 5 C -0.49 -13.94 9.27 -34.44 -0.32 -14.26 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.04 5.34 -17.82 -0.10 1.94 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 9 Si 0.86 21.39 25.82 -169.99 -4.39 17.00 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.25 -5.99 5.48 56.52 0.31 -5.68 16 13 N -0.67 -13.51 5.86 -100.95 -0.59 -14.10 16 14 C 0.09 1.46 1.91 -67.71 -0.13 1.33 16 15 H 0.03 0.59 6.41 -51.93 -0.33 0.26 16 16 C -0.14 -2.29 9.31 37.16 0.35 -1.94 16 17 C -0.08 -1.15 5.01 -27.88 -0.14 -1.29 16 18 C -0.07 -1.02 3.87 -104.62 -0.41 -1.42 16 19 C -0.12 -1.51 9.29 -39.58 -0.37 -1.88 16 20 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.11 -1.56 8.00 -39.58 -0.32 -1.87 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.90 5.42 -51.93 -0.28 0.62 16 26 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.05 1.21 8.03 -51.93 -0.42 0.79 16 28 H 0.06 1.42 4.94 -51.93 -0.26 1.17 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 30 H 0.33 6.30 4.91 -39.29 -0.19 6.10 16 31 H 0.06 1.15 7.18 -51.93 -0.37 0.78 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.13 1.74 7.71 -52.49 -0.40 1.34 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -30.31 309.45 -8.47 -38.78 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.41 Total: 6.99 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.52 Total: -26.46 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.18 Total: -40.97 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.39 Total: 17.00 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.31 -8.47 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.182 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds