Wall clock time and date at job start Mon Mar 30 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 H 1.09007 * 109.46481 * 305.61694 * 3 2 1 5 5 C 1.50703 * 109.46961 * 185.62485 * 3 2 1 6 6 H 1.07994 * 119.99770 * 245.65802 * 5 3 2 7 7 C 1.37872 * 120.00221 * 65.66292 * 5 3 2 8 8 N 1.31512 * 120.00310 * 194.56841 * 7 5 3 9 9 Si 1.86807 * 120.00018 * 14.56805 * 7 5 3 10 10 H 1.48506 * 109.47155 * 87.22739 * 9 7 5 11 11 H 1.48504 * 109.46938 * 207.22503 * 9 7 5 12 12 H 1.48500 * 109.47302 * 327.22741 * 9 7 5 13 13 N 1.46898 * 109.47665 * 65.61977 * 3 2 1 14 14 C 1.46899 * 110.99961 * 256.42658 * 13 3 2 15 15 H 1.08997 * 109.47228 * 42.82445 * 14 13 3 16 16 C 1.53001 * 109.46934 * 282.82842 * 14 13 3 17 17 C 1.52997 * 109.47204 * 162.83132 * 14 13 3 18 18 C 1.50702 * 109.47107 * 294.99714 * 17 14 13 19 19 C 1.38234 * 119.99705 * 269.73033 * 18 17 14 20 20 C 1.38235 * 119.99711 * 179.76675 * 19 18 17 21 21 C 1.38240 * 120.00062 * 0.50115 * 20 19 18 22 22 C 1.38233 * 119.99719 * 359.74662 * 21 20 19 23 23 C 1.38231 * 120.00009 * 89.99779 * 18 17 14 24 24 H 1.08997 * 109.47099 * 176.11524 * 1 2 3 25 25 H 1.09002 * 109.47467 * 296.12178 * 1 2 3 26 26 H 1.09007 * 109.46460 * 56.11729 * 1 2 3 27 27 H 1.09003 * 109.46539 * 119.99127 * 2 1 3 28 28 H 1.08996 * 109.47343 * 239.98946 * 2 1 3 29 29 H 0.96997 * 120.00435 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99731 * 20.37264 * 13 3 2 31 31 H 1.08997 * 109.47132 * 59.99989 * 16 14 13 32 32 H 1.09000 * 109.47524 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.46939 * 300.00174 * 16 14 13 34 34 H 1.09006 * 109.47331 * 54.99202 * 17 14 13 35 35 H 1.08994 * 109.47283 * 174.99589 * 17 14 13 36 36 H 1.07996 * 120.00501 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.00263 * 180.22995 * 20 19 18 38 38 H 1.07995 * 120.00092 * 179.72891 * 21 20 19 39 39 H 1.08006 * 119.99536 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00571 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9845 -0.8355 5 6 3.5406 1.4447 -0.1393 6 1 4.1576 1.8029 0.6715 7 6 4.1258 0.9895 -1.3017 8 7 5.4126 0.7196 -1.3282 9 14 3.0907 0.7559 -2.8391 10 1 3.0302 2.0335 -3.5939 11 1 3.7018 -0.2946 -3.6924 12 1 1.7173 0.3434 -2.4533 13 7 1.6643 2.0948 1.2614 14 6 0.5278 3.0047 1.0654 15 1 -0.2129 2.5278 0.4236 16 6 1.0165 4.2967 0.4074 17 6 -0.1046 3.3299 2.4201 18 6 -0.6951 2.0765 3.0127 19 6 -2.0089 1.7387 2.7466 20 6 -2.5491 0.5864 3.2863 21 6 -1.7787 -0.2227 4.1004 22 6 -0.4665 0.1178 4.3706 23 6 0.0753 1.2674 3.8268 24 1 -0.3633 -1.0253 -0.0696 25 1 -0.3634 0.4525 0.9227 26 1 -0.3632 0.5730 -0.8532 27 1 1.8932 -0.5137 0.8901 28 1 1.8934 -0.5140 -0.8898 29 1 5.8243 0.3990 -2.1459 30 1 1.4614 1.4114 1.9754 31 1 1.4671 4.0650 -0.5576 32 1 0.1734 4.9721 0.2624 33 1 1.7574 4.7736 1.0492 34 1 0.6578 3.7250 3.0916 35 1 -0.8904 4.0731 2.2851 36 1 -2.6122 2.3732 2.1144 37 1 -3.5744 0.3204 3.0754 38 1 -2.2020 -1.1207 4.5256 39 1 0.1353 -0.5141 5.0070 40 1 1.1003 1.5338 4.0385 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062174457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:26 Heat of formation + Delta-G solvation = -5.765618 kcal Electronic energy + Delta-G solvation = -18634.936686 eV Core-core repulsion = 16027.121234 eV Total energy + Delta-G solvation = -2607.815452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49062 -38.62215 -35.64501 -33.98898 -32.33184 -31.72540 -30.47190 -28.64022 -27.24028 -24.39577 -23.42714 -22.57825 -21.52155 -21.09092 -18.76837 -17.58193 -17.11153 -16.57719 -16.05328 -16.00454 -15.53786 -14.99620 -14.69314 -14.54804 -14.19868 -14.11656 -13.60810 -13.40633 -13.28550 -12.93038 -12.79566 -12.74383 -12.60934 -12.33334 -12.19082 -11.95024 -11.74767 -11.68637 -11.48475 -11.25889 -11.21406 -10.53095 -9.74499 -9.49632 -8.87845 -8.24858 -6.20567 0.52496 0.57141 1.32574 1.35579 1.44326 2.36859 2.94687 3.08007 3.57854 3.89651 4.06774 4.18642 4.23870 4.29369 4.35348 4.37046 4.47075 4.50380 4.57965 4.67835 4.73273 4.83687 4.91596 4.98452 5.02440 5.07229 5.08793 5.19479 5.23736 5.27475 5.37048 5.49584 5.51452 5.65629 5.70010 5.77608 5.81574 6.15092 6.21021 6.79709 6.84929 6.91673 7.42560 8.92759 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.006951 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.528310 B = 4027.375645 C = 4291.854540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.202 3.798 4 H 0.020 0.980 5 C -0.499 4.499 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.228 1.228 13 N -0.682 5.682 14 C 0.086 3.914 15 H 0.036 0.964 16 C -0.137 4.137 17 C -0.075 4.075 18 C -0.089 4.089 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 1.058 8.113 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.186 4.186 3 C 0.092 3.908 4 H 0.038 0.962 5 C -0.537 4.537 6 H 0.049 0.951 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.746 3.254 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.151 1.151 13 N -0.315 5.315 14 C -0.024 4.024 15 H 0.054 0.946 16 C -0.195 4.195 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.151 4.151 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.383 1.505 7.959 20.088 hybrid contribution -0.004 -0.848 -0.960 1.281 sum -18.386 0.657 6.999 19.684 Atomic orbital electron populations 1.21845 0.95231 1.01555 1.01542 1.22449 0.95635 0.99878 1.00667 1.19297 0.93190 0.89515 0.88794 0.96223 1.21307 0.91848 1.40026 1.00551 0.95101 1.25727 0.95805 0.94844 1.01981 1.70113 1.13273 1.46964 1.28524 0.86277 0.81506 0.77937 0.79655 1.20283 1.21559 1.15118 1.60614 1.38135 1.23648 1.09138 1.21577 0.91010 0.94091 0.95687 0.94607 1.21792 1.01168 0.96723 0.99781 1.20752 1.00196 0.94951 0.95303 1.20016 0.94507 0.97063 0.97315 1.21261 0.94700 0.98013 1.00367 1.21419 1.00803 0.94571 0.97278 1.21413 0.94169 1.00411 0.98967 1.21384 0.96214 0.96800 1.00103 1.21248 0.99761 0.95817 0.98320 0.92305 0.91998 0.93479 0.93513 0.93614 0.92869 0.84540 0.94921 0.90312 0.92902 0.90769 0.88512 0.84852 0.84070 0.84290 0.85108 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.72 71.98 0.63 -4.26 16 2 C -0.15 -6.27 4.54 30.59 0.14 -6.13 16 3 C 0.20 9.43 1.42 44.17 0.06 9.49 16 4 H 0.02 0.94 5.41 -2.38 -0.01 0.93 16 5 C -0.50 -29.16 9.27 25.60 0.24 -28.92 16 6 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 7 C 0.01 0.78 5.34 84.65 0.45 1.23 16 8 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 9 Si 0.92 44.43 25.82 68.60 1.77 46.20 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.23 -9.94 5.48 99.48 0.54 -9.39 16 13 N -0.68 -27.54 5.86 -473.31 -2.77 -30.31 16 14 C 0.09 2.77 1.91 44.91 0.09 2.86 16 15 H 0.04 1.16 6.41 -2.39 -0.02 1.14 16 16 C -0.14 -4.38 9.31 71.98 0.67 -3.71 16 17 C -0.07 -1.90 5.01 29.85 0.15 -1.75 16 18 C -0.09 -2.23 3.87 -19.87 -0.08 -2.31 16 19 C -0.13 -2.72 9.29 22.27 0.21 -2.52 16 20 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 21 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 22 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 23 C -0.13 -3.51 8.00 22.27 0.18 -3.33 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.96 5.42 -2.39 -0.01 1.95 16 26 H 0.05 1.55 8.10 -2.38 -0.02 1.53 16 27 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 28 H 0.05 2.06 4.94 -2.39 -0.01 2.05 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.33 12.80 4.91 -89.69 -0.44 12.36 16 31 H 0.03 1.20 7.18 -2.39 -0.02 1.19 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.07 1.97 8.09 -2.38 -0.02 1.95 16 35 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.12 3.22 7.71 -2.91 -0.02 3.20 16 Total: -1.00 -67.41 309.45 3.10 -64.30 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.40 Total: 26.71 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.40 Total: -46.67 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.47 Total: -90.54 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.77 Total: 46.20 kcal Total: -67.41 3.10 -64.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062174457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.537 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds