Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47239 * 2 1 4 4 C 1.53001 * 109.46975 * 120.00352 * 2 1 3 5 5 C 1.50706 * 109.46607 * 184.99806 * 4 2 1 6 6 C 1.38238 * 119.99744 * 90.00198 * 5 4 2 7 7 C 1.38234 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00173 * 269.97579 * 5 4 2 11 11 N 1.46905 * 109.46842 * 240.00171 * 2 1 3 12 12 C 1.46896 * 110.99972 * 85.00032 * 11 2 1 13 13 C 1.52998 * 109.47197 * 179.97438 * 12 11 2 14 14 C 1.52998 * 109.47096 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00578 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00226 * 179.97438 * 15 14 13 18 18 N 1.31524 * 119.99816 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00389 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46937 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46953 * 120.00177 * 19 17 15 22 22 H 1.48504 * 109.47117 * 240.00082 * 19 17 15 23 23 H 1.08998 * 109.47202 * 60.00041 * 1 2 3 24 24 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46830 * 299.99440 * 1 2 3 26 26 H 1.08997 * 109.47212 * 65.00509 * 4 2 1 27 27 H 1.08995 * 109.47163 * 304.99920 * 4 2 1 28 28 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 32 32 H 1.07999 * 120.00025 * 0.02562 * 10 5 4 33 33 H 1.00901 * 110.99479 * 208.95500 * 11 2 1 34 34 H 1.08997 * 109.47283 * 299.99711 * 12 11 2 35 35 H 1.09003 * 109.47430 * 59.99792 * 12 11 2 36 36 H 1.09006 * 109.46865 * 299.99848 * 13 12 11 37 37 H 1.09001 * 109.47265 * 60.00115 * 13 12 11 38 38 H 1.08997 * 109.47209 * 299.99739 * 14 13 12 39 39 H 1.08996 * 109.47676 * 60.00268 * 14 13 12 40 40 H 0.96997 * 119.99800 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1324 0.4492 1.9682 7 6 5.5101 0.5465 2.0268 8 6 6.2973 -0.4207 1.4303 9 6 5.7068 -1.4822 0.7705 10 6 4.3292 -1.5819 0.7156 11 7 2.0196 -0.6925 -1.1995 12 6 2.0824 0.2226 -2.3469 13 6 2.5961 -0.5328 -3.5742 14 6 2.6621 0.4205 -4.7691 15 6 3.1686 -0.3234 -5.9778 16 1 3.4190 -1.3713 -5.9014 17 6 3.3126 0.3336 -7.1814 18 7 3.0083 1.6097 -7.2745 19 14 3.9412 -0.5884 -8.6795 20 1 4.2104 -2.0021 -8.3137 21 1 2.9179 -0.5420 -9.7546 22 1 5.1945 0.0461 -9.1613 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.7517 -1.7716 1.2055 27 1 1.6054 -0.2619 2.1369 28 1 3.5174 1.2046 2.4346 29 1 5.9714 1.3781 2.5386 30 1 7.3736 -0.3444 1.4757 31 1 6.3218 -2.2355 0.3006 32 1 3.8678 -2.4133 0.2035 33 1 2.9173 -1.1205 -1.0288 34 1 1.0870 0.6163 -2.5525 35 1 2.7588 1.0462 -2.1183 36 1 3.5916 -0.9262 -3.3683 37 1 1.9200 -1.3566 -3.8031 38 1 1.6668 0.8142 -4.9752 39 1 3.3384 1.2440 -4.5401 40 1 3.1099 2.0720 -8.1211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062185736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -5.403061 kcal Electronic energy + Delta-G solvation = -17365.798742 eV Core-core repulsion = 14757.999012 eV Total energy + Delta-G solvation = -2607.799730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60037 -37.11432 -34.25417 -32.58182 -31.19246 -30.99066 -29.42884 -26.58330 -25.75458 -22.78661 -22.51760 -21.49597 -20.42809 -19.77794 -16.86892 -16.28455 -15.86108 -15.40713 -15.25589 -14.55762 -14.34145 -13.98529 -13.74153 -13.47999 -12.87267 -12.52476 -12.39861 -12.15492 -11.99930 -11.84051 -11.68479 -11.29236 -11.05946 -10.97903 -10.81123 -10.67419 -10.47788 -10.39581 -9.63903 -9.28985 -9.00650 -8.99525 -8.74592 -8.30729 -8.08362 -5.95760 -3.97546 1.27227 1.32099 3.33765 3.40922 3.45689 3.69788 4.41911 4.52641 4.64708 4.79015 4.92564 5.01669 5.05561 5.29635 5.37344 5.40072 5.42863 5.51848 5.66372 5.80681 5.82615 5.90407 5.93435 5.98221 6.02314 6.13172 6.32740 6.39028 6.44139 6.45364 6.53859 6.78688 6.85539 6.93444 7.19660 7.44865 7.72730 7.74866 7.89401 8.05229 8.48767 9.09944 9.66241 11.15822 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.004429 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.295471 B = 6319.922227 C = 7078.643432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.042 0.958 4 C -0.084 4.084 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.119 4.119 11 N -0.689 5.689 12 C 0.060 3.940 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.338 0.662 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -3.509 20.493 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.060 0.940 4 C -0.122 4.122 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.132 4.132 10 C -0.137 4.137 11 N -0.322 5.322 12 C -0.069 4.069 13 C -0.144 4.144 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.602 -3.613 20.204 20.533 hybrid contribution 1.218 0.244 -0.735 1.444 sum 1.821 -3.369 19.469 19.842 Atomic orbital electron populations 1.21787 0.94479 1.02257 1.01149 1.21478 0.95728 0.95883 0.89315 0.94044 1.20857 0.90660 1.02410 0.98283 1.19975 0.95859 0.94980 0.97633 1.21043 0.94877 0.97844 0.99971 1.21133 0.93853 0.98876 0.99872 1.21155 0.99816 0.94953 0.98503 1.21196 0.94945 0.98318 0.98780 1.21165 0.93792 0.99203 0.99542 1.60737 1.33560 1.33814 1.04119 1.22144 1.00309 0.93725 0.90720 1.21613 0.99170 0.99444 0.94202 1.19067 0.97073 0.94236 0.91209 1.21304 1.43215 0.96428 0.94553 0.92638 1.25034 0.95688 0.94879 0.98947 1.69985 1.49113 1.09006 1.25564 0.86548 0.78487 0.80062 0.82989 1.19724 1.21023 1.21070 0.92376 0.92037 0.93023 0.90066 0.90529 0.86282 0.86253 0.86231 0.85921 0.85531 0.84179 0.91539 0.95995 0.93835 0.92597 0.96588 0.96868 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.41 37.16 0.35 -1.28 16 2 C 0.09 1.10 2.64 -67.71 -0.18 0.93 16 3 H 0.04 0.57 7.80 -51.93 -0.40 0.17 16 4 C -0.08 -0.90 4.98 -27.88 -0.14 -1.04 16 5 C -0.08 -0.97 4.84 -104.62 -0.51 -1.48 16 6 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 7 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 8 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 9 C -0.11 -1.27 10.05 -39.58 -0.40 -1.67 16 10 C -0.12 -1.38 8.04 -39.58 -0.32 -1.70 16 11 N -0.69 -10.66 6.31 -106.73 -0.67 -11.33 16 12 C 0.06 1.10 5.48 -3.83 -0.02 1.08 16 13 C -0.11 -2.31 5.41 -26.73 -0.14 -2.46 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.38 7.53 -52.49 -0.40 0.98 16 33 H 0.34 5.08 5.50 -39.29 -0.22 4.87 16 34 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 35 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -31.20 327.72 -9.92 -41.12 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.82 Total: 1.17 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -3.08 Total: -26.13 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.06 Total: -38.17 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.20 -9.92 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062185736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.718 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds