Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47239 * 2 1 4 4 C 1.53001 * 109.46975 * 120.00352 * 2 1 3 5 5 C 1.50706 * 109.46607 * 184.99806 * 4 2 1 6 6 C 1.38238 * 119.99744 * 90.00198 * 5 4 2 7 7 C 1.38234 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00173 * 269.97579 * 5 4 2 11 11 N 1.46905 * 109.46842 * 240.00171 * 2 1 3 12 12 C 1.46896 * 110.99972 * 85.00032 * 11 2 1 13 13 C 1.52998 * 109.47197 * 179.97438 * 12 11 2 14 14 C 1.52998 * 109.47096 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00578 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00226 * 179.97438 * 15 14 13 18 18 N 1.31524 * 119.99816 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00389 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46937 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46953 * 120.00177 * 19 17 15 22 22 H 1.48504 * 109.47117 * 240.00082 * 19 17 15 23 23 H 1.08998 * 109.47202 * 60.00041 * 1 2 3 24 24 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46830 * 299.99440 * 1 2 3 26 26 H 1.08997 * 109.47212 * 65.00509 * 4 2 1 27 27 H 1.08995 * 109.47163 * 304.99920 * 4 2 1 28 28 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 32 32 H 1.07999 * 120.00025 * 0.02562 * 10 5 4 33 33 H 1.00901 * 110.99479 * 208.95500 * 11 2 1 34 34 H 1.08997 * 109.47283 * 299.99711 * 12 11 2 35 35 H 1.09003 * 109.47430 * 59.99792 * 12 11 2 36 36 H 1.09006 * 109.46865 * 299.99848 * 13 12 11 37 37 H 1.09001 * 109.47265 * 60.00115 * 13 12 11 38 38 H 1.08997 * 109.47209 * 299.99739 * 14 13 12 39 39 H 1.08996 * 109.47676 * 60.00268 * 14 13 12 40 40 H 0.96997 * 119.99800 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1324 0.4492 1.9682 7 6 5.5101 0.5465 2.0268 8 6 6.2973 -0.4207 1.4303 9 6 5.7068 -1.4822 0.7705 10 6 4.3292 -1.5819 0.7156 11 7 2.0196 -0.6925 -1.1995 12 6 2.0824 0.2226 -2.3469 13 6 2.5961 -0.5328 -3.5742 14 6 2.6621 0.4205 -4.7691 15 6 3.1686 -0.3234 -5.9778 16 1 3.4190 -1.3713 -5.9014 17 6 3.3126 0.3336 -7.1814 18 7 3.0083 1.6097 -7.2745 19 14 3.9412 -0.5884 -8.6795 20 1 4.2104 -2.0021 -8.3137 21 1 2.9179 -0.5420 -9.7546 22 1 5.1945 0.0461 -9.1613 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.7517 -1.7716 1.2055 27 1 1.6054 -0.2619 2.1369 28 1 3.5174 1.2046 2.4346 29 1 5.9714 1.3781 2.5386 30 1 7.3736 -0.3444 1.4757 31 1 6.3218 -2.2355 0.3006 32 1 3.8678 -2.4133 0.2035 33 1 2.9173 -1.1205 -1.0288 34 1 1.0870 0.6163 -2.5525 35 1 2.7588 1.0462 -2.1183 36 1 3.5916 -0.9262 -3.3683 37 1 1.9200 -1.3566 -3.8031 38 1 1.6668 0.8142 -4.9752 39 1 3.3384 1.2440 -4.5401 40 1 3.1099 2.0720 -8.1211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062185736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -22.502499 kcal Electronic energy + Delta-G solvation = -17366.540230 eV Core-core repulsion = 14757.999012 eV Total energy + Delta-G solvation = -2608.541218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45648 -38.28576 -36.02841 -34.30672 -32.48339 -31.80206 -30.86171 -27.83261 -27.26977 -24.43690 -23.49459 -22.46963 -21.99058 -21.05026 -18.49917 -17.67793 -17.07378 -16.61000 -16.36409 -16.14506 -15.54311 -15.51193 -14.77341 -14.41362 -14.26696 -13.94825 -13.72447 -13.48303 -13.30873 -12.99849 -12.83070 -12.75845 -12.66821 -12.45266 -12.18094 -11.98934 -11.81875 -11.61417 -11.49531 -11.37696 -11.07446 -10.56939 -9.83632 -9.59293 -9.36078 -8.20948 -6.32292 0.44279 0.49561 1.39522 1.40083 1.53857 2.40616 2.86385 3.12098 3.24865 3.80051 3.97186 4.03942 4.16755 4.24899 4.27653 4.32137 4.41429 4.54394 4.59449 4.66739 4.68672 4.85388 4.86074 4.94958 4.97512 5.06552 5.14333 5.18645 5.22095 5.24004 5.42923 5.50656 5.58301 5.63492 5.70205 5.72632 5.83974 6.10206 6.14486 6.26750 6.50180 6.84424 7.37101 8.91421 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.004429 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.295471 B = 6319.922227 C = 7078.643432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.032 0.968 4 C -0.075 4.075 5 C -0.097 4.097 6 C -0.130 4.130 7 C -0.128 4.128 8 C -0.136 4.136 9 C -0.129 4.129 10 C -0.135 4.135 11 N -0.688 5.688 12 C 0.073 3.927 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.542 4.542 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.341 0.659 34 H 0.062 0.938 35 H 0.013 0.987 36 H 0.045 0.955 37 H 0.054 0.946 38 H -0.008 1.008 39 H -0.012 1.012 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -4.348 21.219 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.050 0.950 4 C -0.113 4.113 5 C -0.097 4.097 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.147 4.147 10 C -0.153 4.153 11 N -0.322 5.322 12 C -0.056 4.056 13 C -0.129 4.129 14 C -0.012 4.012 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.010 0.990 39 H 0.006 0.994 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.940 -4.462 20.952 21.442 hybrid contribution 1.121 0.544 -0.917 1.547 sum 2.061 -3.918 20.035 20.518 Atomic orbital electron populations 1.21777 0.93506 1.02517 1.01590 1.21580 0.96430 0.95428 0.89077 0.94953 1.20801 0.90232 1.02503 0.97754 1.20139 0.96325 0.95280 0.97992 1.21329 0.95454 0.98058 0.99946 1.21464 0.93946 0.99428 0.99739 1.21468 1.00969 0.94774 0.98174 1.21459 0.95112 0.98996 0.99106 1.21328 0.94272 0.99631 1.00032 1.60704 1.33819 1.33218 1.04414 1.21837 0.99547 0.93438 0.90758 1.21367 0.99501 0.98359 0.93696 1.18964 0.94810 0.94359 0.93044 1.21716 1.43702 0.96877 0.95746 0.92234 1.26010 0.95621 0.95779 1.02470 1.70114 1.49901 1.10750 1.26734 0.85368 0.78013 0.78991 0.78497 1.18562 1.20217 1.20256 0.94082 0.91834 0.90478 0.89692 0.88335 0.84744 0.84271 0.84462 0.84800 0.85362 0.83829 0.91920 0.96891 0.93572 0.92675 0.98968 0.99380 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.41 71.98 0.68 -2.31 16 2 C 0.08 2.06 2.64 44.92 0.12 2.18 16 3 H 0.03 0.86 7.80 -2.39 -0.02 0.84 16 4 C -0.08 -1.46 4.98 29.85 0.15 -1.31 16 5 C -0.10 -2.11 4.84 -19.86 -0.10 -2.21 16 6 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 7 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 8 C -0.14 -2.72 10.05 22.27 0.22 -2.50 16 9 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 10 C -0.13 -3.03 8.04 22.27 0.18 -2.85 16 11 N -0.69 -20.83 6.31 -491.57 -3.10 -23.93 16 12 C 0.07 2.74 5.48 86.30 0.47 3.21 16 13 C -0.09 -4.02 5.41 30.59 0.17 -3.85 16 14 C 0.03 1.43 4.97 29.85 0.15 1.58 16 15 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 19 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H 0.04 1.03 7.45 -2.39 -0.02 1.01 16 24 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 27 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 28 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.13 2.72 7.53 -2.91 -0.02 2.70 16 33 H 0.34 10.02 5.50 -89.69 -0.49 9.53 16 34 H 0.06 2.37 7.44 -2.39 -0.02 2.36 16 35 H 0.01 0.50 8.06 -2.39 -0.02 0.48 16 36 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -66.72 327.72 3.10 -63.62 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.49 Total: 17.73 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.40 Total: -46.69 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.82 Total: -81.87 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.72 3.10 -63.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062185736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.120 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds