Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.46770 * 2 1 4 4 C 1.53007 * 109.46545 * 240.00770 * 2 1 3 5 5 C 1.50703 * 109.46640 * 175.00167 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00059 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 4 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 10 10 C 1.38234 * 119.99503 * 270.01660 * 5 4 2 11 11 N 1.46897 * 109.47427 * 120.00561 * 2 1 3 12 12 C 1.46893 * 111.00003 * 275.00011 * 11 2 1 13 13 C 1.53002 * 109.47123 * 179.97438 * 12 11 2 14 14 C 1.53008 * 109.46989 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46842 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00432 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00144 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47327 * 89.99487 * 19 17 15 21 21 H 1.48497 * 109.47479 * 210.00018 * 19 17 15 22 22 H 1.48505 * 109.47069 * 329.99427 * 19 17 15 23 23 H 1.09004 * 109.47254 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46587 * 299.99413 * 1 2 3 25 25 H 1.08994 * 109.47648 * 59.99232 * 1 2 3 26 26 H 1.08988 * 109.47457 * 54.99691 * 4 2 1 27 27 H 1.09000 * 109.46671 * 294.99462 * 4 2 1 28 28 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 30 30 H 1.07999 * 119.99932 * 180.24104 * 8 7 6 31 31 H 1.08001 * 120.00310 * 179.72161 * 9 8 7 32 32 H 1.07997 * 120.00460 * 0.02562 * 10 5 4 33 33 H 1.00900 * 111.00041 * 151.04294 * 11 2 1 34 34 H 1.09000 * 109.46930 * 299.99575 * 12 11 2 35 35 H 1.09001 * 109.47596 * 59.99728 * 12 11 2 36 36 H 1.09000 * 109.46897 * 299.99627 * 13 12 11 37 37 H 1.08999 * 109.46999 * 60.00222 * 13 12 11 38 38 H 1.09000 * 109.47223 * 299.99705 * 14 13 12 39 39 H 1.08999 * 109.46842 * 60.00403 * 14 13 12 40 40 H 0.97000 * 120.00080 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 6 4.3291 -1.5816 -0.7158 7 6 5.7067 -1.4809 -0.7691 8 6 6.2972 -0.4193 -1.4287 9 6 5.5099 0.5475 -2.0259 10 6 4.1322 0.4497 -1.9680 11 7 2.0198 -0.6926 1.1993 12 6 2.0826 0.2223 2.3468 13 6 2.5952 -0.5335 3.5743 14 6 2.6612 0.4197 4.7694 15 6 3.1656 -0.3250 5.9786 16 1 3.4146 -1.3732 5.9023 17 6 3.3102 0.3320 7.1820 18 7 3.7508 -0.3177 8.2371 19 14 2.8803 2.1450 7.3139 20 1 1.4510 2.2888 7.6906 21 1 3.7319 2.7816 8.3506 22 1 3.1162 2.8062 6.0053 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 1.6053 -0.2616 -2.1370 27 1 1.7515 -1.7714 -1.2058 28 1 3.8677 -2.4129 -0.2034 29 1 6.3218 -2.2339 -0.2988 30 1 7.3735 -0.3427 -1.4737 31 1 5.9712 1.3793 -2.5374 32 1 3.5172 1.2053 -2.4339 33 1 2.9174 -1.1206 1.0285 34 1 2.7590 1.0459 2.1182 35 1 1.0872 0.6161 2.5526 36 1 1.9185 -1.3569 3.8028 37 1 3.5905 -0.9275 3.3689 38 1 3.3382 1.2428 4.5407 39 1 1.6661 0.8140 4.9750 40 1 3.8521 0.1444 9.0839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062185737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = -1.724036 kcal Electronic energy + Delta-G solvation = -17415.904491 eV Core-core repulsion = 14808.264295 eV Total energy + Delta-G solvation = -2607.640196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.64093 -37.19513 -34.36523 -32.56963 -31.33210 -31.02360 -29.72714 -26.67460 -26.05008 -22.77436 -22.38048 -21.47532 -20.48785 -19.77467 -16.90366 -16.69091 -15.93103 -15.48646 -15.31493 -14.62911 -14.15036 -14.06520 -13.80805 -13.51063 -12.91220 -12.70920 -12.47886 -12.40653 -12.05887 -11.89780 -11.88282 -11.44777 -11.12447 -11.07272 -10.91366 -10.74049 -10.63590 -9.90125 -9.68037 -9.52779 -9.12961 -9.03219 -8.78659 -8.49753 -8.16878 -6.00234 -3.97590 1.23849 1.28890 3.33346 3.40276 3.44616 3.66467 4.36389 4.48892 4.60432 4.75325 4.89207 4.96234 5.02266 5.25015 5.31706 5.33876 5.39111 5.47080 5.62000 5.70272 5.76644 5.81917 5.85971 5.92030 5.94917 6.06398 6.21975 6.31981 6.37235 6.42175 6.49601 6.61813 6.65553 6.90134 6.97515 7.30401 7.40575 7.49717 7.67039 7.84861 8.59541 9.05474 9.62707 11.13439 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.004675 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.419452 B = 5987.590752 C = 6608.478096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.041 0.959 4 C -0.085 4.085 5 C -0.085 4.085 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.126 4.126 9 C -0.119 4.119 10 C -0.120 4.120 11 N -0.688 5.688 12 C 0.057 3.943 13 C -0.099 4.099 14 C -0.013 4.013 15 C -0.517 4.517 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.340 0.660 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 1.022 -23.014 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.137 4.137 7 C -0.132 4.132 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.138 4.138 11 N -0.322 5.322 12 C -0.072 4.072 13 C -0.137 4.137 14 C -0.051 4.051 15 C -0.555 4.555 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.160 0.840 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.113 0.799 -22.659 22.700 hybrid contribution 0.688 1.553 0.075 1.700 sum -0.424 2.352 -22.584 22.710 Atomic orbital electron populations 1.21788 0.94449 1.02339 1.01110 1.21480 0.95737 0.95843 0.89328 0.94074 1.20853 0.90690 1.02457 0.98210 1.19969 0.95831 0.95009 0.97717 1.21175 0.93803 0.99189 0.99525 1.21211 0.94959 0.98302 0.98712 1.21161 0.99844 0.94937 0.98449 1.21134 0.93846 0.98900 0.99874 1.21038 0.94877 0.97861 1.00009 1.60699 1.33718 1.33669 1.04069 1.22170 1.00239 0.93808 0.90943 1.21436 0.99957 0.99103 0.93196 1.19543 0.96198 0.95409 0.93922 1.21159 1.43408 0.98251 0.92722 0.91032 1.25033 0.94727 0.98058 0.95739 1.69918 1.47086 1.36581 1.00885 0.86775 0.78538 0.85997 0.77947 1.20284 1.21439 1.19117 0.91949 0.92455 0.92992 0.90505 0.90000 0.85480 0.85848 0.86204 0.86267 0.86316 0.83994 0.96003 0.91554 0.91976 0.93189 0.96916 0.97077 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.42 37.16 0.35 -1.19 16 2 C 0.09 1.05 2.64 -67.71 -0.18 0.87 16 3 H 0.04 0.54 7.80 -51.93 -0.41 0.13 16 4 C -0.08 -0.86 4.98 -27.88 -0.14 -1.00 16 5 C -0.09 -0.94 4.84 -104.62 -0.51 -1.45 16 6 C -0.12 -1.35 8.04 -39.58 -0.32 -1.66 16 7 C -0.11 -1.24 10.05 -39.58 -0.40 -1.64 16 8 C -0.13 -1.30 10.05 -39.59 -0.40 -1.70 16 9 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 10 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 11 N -0.69 -10.16 6.31 -106.73 -0.67 -10.83 16 12 C 0.06 0.99 5.48 -3.83 -0.02 0.97 16 13 C -0.10 -2.06 5.41 -26.73 -0.14 -2.20 16 14 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 15 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 19 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.66 8.08 -51.94 -0.42 0.24 16 27 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.13 1.35 7.53 -52.49 -0.40 0.95 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.34 4.90 5.50 -39.29 -0.22 4.69 16 34 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 35 H 0.07 1.14 7.44 -51.93 -0.39 0.75 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -31.58 324.11 -9.55 -41.12 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.78 Total: 1.37 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -3.08 Total: -26.40 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.10 Total: -38.58 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.58 -9.55 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062185737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.401 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds