Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.46770 * 2 1 4 4 C 1.53007 * 109.46545 * 240.00770 * 2 1 3 5 5 C 1.50703 * 109.46640 * 175.00167 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00059 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 4 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 10 10 C 1.38234 * 119.99503 * 270.01660 * 5 4 2 11 11 N 1.46897 * 109.47427 * 120.00561 * 2 1 3 12 12 C 1.46893 * 111.00003 * 275.00011 * 11 2 1 13 13 C 1.53002 * 109.47123 * 179.97438 * 12 11 2 14 14 C 1.53008 * 109.46989 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46842 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00432 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00144 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47327 * 89.99487 * 19 17 15 21 21 H 1.48497 * 109.47479 * 210.00018 * 19 17 15 22 22 H 1.48505 * 109.47069 * 329.99427 * 19 17 15 23 23 H 1.09004 * 109.47254 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46587 * 299.99413 * 1 2 3 25 25 H 1.08994 * 109.47648 * 59.99232 * 1 2 3 26 26 H 1.08988 * 109.47457 * 54.99691 * 4 2 1 27 27 H 1.09000 * 109.46671 * 294.99462 * 4 2 1 28 28 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 30 30 H 1.07999 * 119.99932 * 180.24104 * 8 7 6 31 31 H 1.08001 * 120.00310 * 179.72161 * 9 8 7 32 32 H 1.07997 * 120.00460 * 0.02562 * 10 5 4 33 33 H 1.00900 * 111.00041 * 151.04294 * 11 2 1 34 34 H 1.09000 * 109.46930 * 299.99575 * 12 11 2 35 35 H 1.09001 * 109.47596 * 59.99728 * 12 11 2 36 36 H 1.09000 * 109.46897 * 299.99627 * 13 12 11 37 37 H 1.08999 * 109.46999 * 60.00222 * 13 12 11 38 38 H 1.09000 * 109.47223 * 299.99705 * 14 13 12 39 39 H 1.08999 * 109.46842 * 60.00403 * 14 13 12 40 40 H 0.97000 * 120.00080 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 6 4.3291 -1.5816 -0.7158 7 6 5.7067 -1.4809 -0.7691 8 6 6.2972 -0.4193 -1.4287 9 6 5.5099 0.5475 -2.0259 10 6 4.1322 0.4497 -1.9680 11 7 2.0198 -0.6926 1.1993 12 6 2.0826 0.2223 2.3468 13 6 2.5952 -0.5335 3.5743 14 6 2.6612 0.4197 4.7694 15 6 3.1656 -0.3250 5.9786 16 1 3.4146 -1.3732 5.9023 17 6 3.3102 0.3320 7.1820 18 7 3.7508 -0.3177 8.2371 19 14 2.8803 2.1450 7.3139 20 1 1.4510 2.2888 7.6906 21 1 3.7319 2.7816 8.3506 22 1 3.1162 2.8062 6.0053 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 1.6053 -0.2616 -2.1370 27 1 1.7515 -1.7714 -1.2058 28 1 3.8677 -2.4129 -0.2034 29 1 6.3218 -2.2339 -0.2988 30 1 7.3735 -0.3427 -1.4737 31 1 5.9712 1.3793 -2.5374 32 1 3.5172 1.2053 -2.4339 33 1 2.9174 -1.1206 1.0285 34 1 2.7590 1.0459 2.1182 35 1 1.0872 0.6161 2.5526 36 1 1.9185 -1.3569 3.8028 37 1 3.5905 -0.9275 3.3689 38 1 3.3382 1.2428 4.5407 39 1 1.6661 0.8140 4.9750 40 1 3.8521 0.1444 9.0839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062185737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = -19.868430 kcal Electronic energy + Delta-G solvation = -17416.691291 eV Core-core repulsion = 14808.264295 eV Total energy + Delta-G solvation = -2608.426996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45859 -38.29219 -36.03408 -34.34686 -32.64236 -31.80479 -31.04039 -28.02312 -27.29269 -24.12285 -23.47961 -22.43109 -21.96237 -21.03196 -18.91421 -17.67943 -17.06557 -16.61057 -16.21843 -16.14570 -15.60378 -15.45499 -14.91110 -14.63627 -14.27109 -13.99900 -13.84592 -13.53847 -13.31951 -13.05842 -12.83057 -12.72151 -12.61530 -12.54020 -12.00980 -11.81526 -11.79858 -11.60258 -11.47060 -11.44300 -11.25174 -10.77247 -9.83883 -9.59482 -9.33948 -8.30207 -6.34557 0.44056 0.49187 1.34812 1.36806 1.49032 2.35661 2.86204 3.04891 3.24479 3.80123 3.97109 4.03875 4.16232 4.24283 4.26341 4.30256 4.41839 4.53955 4.59188 4.64655 4.66965 4.81193 4.85684 4.90033 4.98281 5.02173 5.08688 5.12061 5.17909 5.23775 5.43933 5.49145 5.58051 5.59161 5.63505 5.65010 5.70401 6.12081 6.16903 6.29242 6.49513 6.73288 7.30043 8.86901 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.004675 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.419452 B = 5987.590752 C = 6608.478096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.086 3.914 3 H 0.037 0.963 4 C -0.077 4.077 5 C -0.096 4.096 6 C -0.135 4.135 7 C -0.130 4.130 8 C -0.136 4.136 9 C -0.127 4.127 10 C -0.128 4.128 11 N -0.692 5.692 12 C 0.071 3.929 13 C -0.090 4.090 14 C -0.009 4.009 15 C -0.534 4.534 16 H 0.029 0.971 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.248 1.248 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.340 0.660 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 3.075 -24.889 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.114 4.114 5 C -0.096 4.096 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.145 4.145 10 C -0.146 4.146 11 N -0.326 5.326 12 C -0.059 4.059 13 C -0.128 4.128 14 C -0.047 4.047 15 C -0.572 4.572 16 H 0.048 0.952 17 C -0.193 4.193 18 N -0.593 5.593 19 Si 0.776 3.224 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.172 1.172 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.876 2.840 -24.561 24.795 hybrid contribution 0.976 0.802 0.649 1.420 sum -0.899 3.642 -23.912 24.205 Atomic orbital electron populations 1.21779 0.93486 1.02421 1.01730 1.21572 0.96403 0.95536 0.88883 0.94483 1.20809 0.90192 1.02445 0.97965 1.20129 0.96319 0.95218 0.97949 1.21313 0.94247 0.99645 1.00104 1.21447 0.95148 0.99013 0.99186 1.21457 1.00957 0.94778 0.98180 1.21465 0.93964 0.99382 0.99645 1.21329 0.95400 0.98041 0.99853 1.60678 1.33908 1.33442 1.04614 1.21899 1.00129 0.93483 0.90345 1.21262 0.99558 0.98331 0.93656 1.19482 0.96173 0.95679 0.93376 1.21501 1.43674 0.96988 0.95043 0.95223 1.26048 0.94426 1.03756 0.95107 1.70073 1.48450 1.39051 1.01732 0.85614 0.78834 0.79098 0.78837 1.18912 1.20790 1.17185 0.92135 0.93689 0.90536 0.88298 0.89972 0.85611 0.85081 0.84551 0.84190 0.84557 0.83905 0.96015 0.91058 0.93058 0.93981 0.96497 0.96187 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.42 71.98 0.68 -2.02 16 2 C 0.09 1.90 2.64 44.92 0.12 2.02 16 3 H 0.04 0.87 7.80 -2.39 -0.02 0.86 16 4 C -0.08 -1.39 4.98 29.85 0.15 -1.24 16 5 C -0.10 -1.98 4.84 -19.87 -0.10 -2.08 16 6 C -0.14 -2.99 8.04 22.27 0.18 -2.81 16 7 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 8 C -0.14 -2.64 10.05 22.27 0.22 -2.42 16 9 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 10 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 11 N -0.69 -19.63 6.31 -491.58 -3.10 -22.73 16 12 C 0.07 2.36 5.48 86.31 0.47 2.83 16 13 C -0.09 -3.74 5.41 30.60 0.17 -3.57 16 14 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 15 C -0.53 -32.08 9.66 25.60 0.25 -31.83 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 17 C 0.00 0.19 5.47 84.65 0.46 0.65 16 18 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 19 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 23 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.04 1.00 7.45 -2.39 -0.02 0.98 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.36 8.08 -2.39 -0.02 1.35 16 27 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.13 2.69 7.53 -2.91 -0.02 2.66 16 29 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.34 9.60 5.50 -89.69 -0.49 9.11 16 34 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.07 2.31 7.44 -2.39 -0.02 2.30 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 39 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -68.22 324.11 2.90 -65.32 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.44 Total: 18.82 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.38 Total: -47.68 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.80 Total: -83.65 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -68.22 2.90 -65.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062185737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.449 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds