Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46832 * 2 1 4 4 H 1.09006 * 109.47698 * 54.31305 * 3 2 1 5 5 C 1.53004 * 109.47110 * 174.31182 * 3 2 1 6 6 N 1.46896 * 109.47111 * 296.51681 * 5 3 2 7 7 C 1.46906 * 110.99916 * 180.02562 * 6 5 3 8 8 H 1.08996 * 109.46801 * 324.99114 * 7 6 5 9 9 C 1.52994 * 109.47421 * 84.99454 * 7 6 5 10 10 C 1.50699 * 109.47004 * 204.99782 * 7 6 5 11 11 H 1.08004 * 119.99937 * 359.97438 * 10 7 6 12 12 C 1.37872 * 120.00087 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00288 * 179.97438 * 12 10 7 14 14 Si 1.86793 * 120.00136 * 0.02562 * 12 10 7 15 15 H 1.48500 * 109.47551 * 89.99498 * 14 12 10 16 16 H 1.48497 * 109.47324 * 209.99825 * 14 12 10 17 17 H 1.48505 * 109.47247 * 329.99459 * 14 12 10 18 18 C 1.50696 * 109.47255 * 294.31175 * 3 2 1 19 19 C 1.38236 * 120.00227 * 299.72828 * 18 3 2 20 20 C 1.38233 * 120.00075 * 179.78389 * 19 18 3 21 21 C 1.38234 * 120.00049 * 0.44830 * 20 19 18 22 22 C 1.38234 * 120.00016 * 359.80701 * 21 20 19 23 23 C 1.38231 * 120.00024 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46979 * 65.55585 * 1 2 3 25 25 H 1.09003 * 109.46593 * 185.55363 * 1 2 3 26 26 H 1.08995 * 109.46922 * 305.55447 * 1 2 3 27 27 H 1.08994 * 109.47234 * 239.99508 * 2 1 3 28 28 H 1.09007 * 109.46889 * 119.99623 * 2 1 3 29 29 H 1.09006 * 109.46679 * 56.51476 * 5 3 2 30 30 H 1.08994 * 109.47249 * 176.50803 * 5 3 2 31 31 H 1.00904 * 110.99490 * 303.94683 * 6 5 3 32 32 H 1.09001 * 109.47578 * 299.99930 * 9 7 6 33 33 H 1.08998 * 109.47007 * 60.00372 * 9 7 6 34 34 H 1.09003 * 109.47067 * 179.97438 * 9 7 6 35 35 H 0.96998 * 120.00229 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.99818 * 359.97438 * 19 18 3 37 37 H 1.08006 * 119.99708 * 180.27341 * 20 19 18 38 38 H 1.08007 * 119.99731 * 179.83302 * 21 20 19 39 39 H 1.08002 * 119.99871 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00231 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 0.8347 5 6 3.5633 1.4449 0.1430 6 7 3.9341 0.8686 1.4423 7 6 5.3929 0.8552 1.6153 8 1 5.8709 0.6667 0.6540 9 6 5.8547 2.2091 2.1578 10 6 5.7735 -0.2317 2.5872 11 1 5.0082 -0.8504 3.0323 12 6 7.0986 -0.4364 2.9083 13 7 7.4308 -1.3847 3.7569 14 14 8.4221 0.6340 2.1391 15 1 8.6559 1.8244 2.9956 16 1 9.6809 -0.1446 2.0193 17 1 7.9817 1.0733 0.7906 18 6 1.6559 2.1110 -1.2948 19 6 2.1096 1.6014 -2.4970 20 6 1.7536 2.2121 -3.6849 21 6 0.9516 3.3379 -3.6702 22 6 0.5022 3.8506 -2.4677 23 6 0.8544 3.2373 -1.2800 24 1 -0.3633 0.4253 -0.9356 25 1 -0.3632 -1.0229 0.0995 26 1 -0.3633 0.5975 0.8360 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.0043 0.8504 -0.6573 30 1 3.9325 2.4685 0.0808 31 1 3.4852 1.3634 2.1985 32 1 5.5794 2.9954 1.4548 33 1 5.3766 2.3975 3.1190 34 1 6.9370 2.1990 2.2865 35 1 8.3630 -1.5285 3.9830 36 1 2.7397 0.7243 -2.5083 37 1 2.1045 1.8113 -4.6245 38 1 0.6757 3.8165 -4.5982 39 1 -0.1248 4.7299 -2.4562 40 1 0.5037 3.6381 -0.3405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068607657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -5.163127 kcal Electronic energy + Delta-G solvation = -17849.709355 eV Core-core repulsion = 15241.920029 eV Total energy + Delta-G solvation = -2607.789326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53075 -38.29469 -36.25581 -34.22157 -31.77538 -31.73192 -31.20890 -27.91452 -27.09909 -24.10154 -23.75207 -23.10078 -22.03513 -20.73417 -18.74581 -17.76930 -16.92378 -16.39043 -16.22035 -15.77937 -15.38060 -15.05655 -14.84721 -14.74815 -14.21710 -14.14364 -13.97096 -13.74450 -13.37485 -13.26035 -12.98580 -12.60447 -12.47019 -12.24801 -12.01576 -11.94599 -11.75875 -11.54309 -11.39784 -11.33725 -11.13828 -10.73994 -9.75367 -9.51743 -8.99232 -8.26305 -6.28198 0.52513 0.56581 1.28865 1.34770 1.44542 2.32254 2.93932 3.07870 3.46343 3.80737 4.00332 4.18765 4.22715 4.29160 4.34636 4.42155 4.45513 4.54608 4.60088 4.63381 4.70072 4.72492 4.77332 4.85880 4.95986 5.05328 5.12533 5.17909 5.24243 5.29319 5.37735 5.42162 5.55346 5.66450 5.68307 5.69696 5.85221 6.03954 6.19390 6.69678 6.76651 6.80386 7.36891 8.91143 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030246 B = 0.005082 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.523866 B = 5508.021802 C = 5945.549073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.036 4.036 4 H 0.080 0.920 5 C 0.072 3.928 6 N -0.677 5.677 7 C 0.187 3.813 8 H 0.024 0.976 9 C -0.176 4.176 10 C -0.501 4.501 11 H 0.037 0.963 12 C 0.009 3.991 13 N -0.951 5.951 14 Si 0.951 3.049 15 H -0.267 1.267 16 H -0.299 1.299 17 H -0.253 1.253 18 C -0.074 4.074 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.124 4.124 23 C -0.128 4.128 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.336 0.664 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 11.586 -14.199 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C -0.055 4.055 4 H 0.098 0.902 5 C -0.058 4.058 6 N -0.307 5.307 7 C 0.077 3.923 8 H 0.042 0.958 9 C -0.235 4.235 10 C -0.539 4.539 11 H 0.056 0.944 12 C -0.187 4.187 13 N -0.592 5.592 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.226 1.226 17 H -0.178 1.178 18 C -0.075 4.075 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.046 10.843 -14.344 22.817 hybrid contribution 1.236 0.817 0.327 1.517 sum -12.810 11.660 -14.017 22.283 Atomic orbital electron populations 1.21707 0.95034 1.01555 1.01552 1.21431 0.95997 0.95020 1.01963 1.20130 0.94004 0.96622 0.94748 0.90167 1.21972 0.95128 0.96483 0.92183 1.60446 1.08370 1.58431 1.03457 1.19395 0.86095 0.91815 0.94972 0.95833 1.22712 1.00229 0.99201 1.01356 1.21271 0.92444 1.15785 1.24432 0.94440 1.25779 1.00909 0.96643 0.95397 1.70043 1.18395 1.34407 1.36369 0.85834 0.77919 0.78234 0.80186 1.19316 1.22648 1.17771 1.19856 0.97396 0.95751 0.94463 1.21158 1.00514 1.00496 0.92678 1.21388 0.98426 0.96450 0.98179 1.21436 0.98191 0.96544 0.98920 1.21423 1.00085 1.00401 0.92246 1.21277 0.98589 0.95499 0.99221 0.92975 0.92703 0.92475 0.92916 0.92014 0.92530 0.95937 0.84597 0.92508 0.92414 0.94675 0.92637 0.86712 0.84718 0.84070 0.84059 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.64 71.98 0.69 -2.51 16 2 C -0.11 -2.93 5.25 30.59 0.16 -2.77 16 3 C -0.04 -0.96 2.18 -11.54 -0.03 -0.99 16 4 H 0.08 2.01 7.88 -2.38 -0.02 1.99 16 5 C 0.07 2.33 4.65 86.31 0.40 2.73 16 6 N -0.68 -26.73 5.53 -495.45 -2.74 -29.47 16 7 C 0.19 8.71 2.16 44.17 0.10 8.80 16 8 H 0.02 1.15 6.86 -2.39 -0.02 1.13 16 9 C -0.18 -7.26 8.64 71.98 0.62 -6.64 16 10 C -0.50 -28.91 9.42 25.60 0.24 -28.67 16 11 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 12 C 0.01 0.55 5.45 84.65 0.46 1.01 16 13 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 14 Si 0.95 45.48 24.37 68.60 1.67 47.15 16 15 H -0.27 -12.11 6.87 99.48 0.68 -11.42 16 16 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 17 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 18 C -0.07 -1.78 3.89 -19.87 -0.08 -1.85 16 19 C -0.13 -3.09 8.68 22.27 0.19 -2.90 16 20 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.66 9.67 22.27 0.22 -2.44 16 24 H 0.05 1.14 7.58 -2.39 -0.02 1.12 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.48 7.22 -2.39 -0.02 1.46 16 28 H 0.06 2.01 7.55 -2.38 -0.02 1.99 16 29 H 0.06 1.95 7.41 -2.38 -0.02 1.93 16 30 H 0.02 0.72 7.43 -2.39 -0.02 0.70 16 31 H 0.34 12.43 8.47 -89.69 -0.76 11.67 16 32 H 0.06 1.99 7.45 -2.39 -0.02 1.97 16 33 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 34 H 0.03 1.51 3.27 -2.39 -0.01 1.50 16 35 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.11 2.80 7.11 -2.91 -0.02 2.78 16 37 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 2.33 7.95 -2.91 -0.02 2.30 16 Total: -1.00 -65.49 315.29 3.05 -62.44 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.16 Total: 22.44 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 3.65 Total: -42.63 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -2.44 Total: -89.40 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.15 kcal Total: -65.49 3.05 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.273 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds