Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 H 1.09000 * 109.46953 * 54.66015 * 3 2 1 5 5 C 1.52996 * 109.47346 * 174.66445 * 3 2 1 6 6 N 1.46899 * 109.47441 * 294.43274 * 5 3 2 7 7 C 1.46895 * 111.00157 * 185.94828 * 6 5 3 8 8 H 1.09004 * 109.47023 * 34.99835 * 7 6 5 9 9 C 1.53000 * 109.47050 * 274.99790 * 7 6 5 10 10 C 1.50698 * 109.47098 * 154.99364 * 7 6 5 11 11 H 1.07995 * 120.00221 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00134 * 179.97438 * 10 7 6 13 13 N 1.31521 * 119.99770 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00350 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46969 * 59.99966 * 14 12 10 16 16 H 1.48502 * 109.47044 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46688 * 300.00242 * 14 12 10 18 18 C 1.50702 * 109.46719 * 294.66824 * 3 2 1 19 19 C 1.38235 * 119.99767 * 299.72480 * 18 3 2 20 20 C 1.38236 * 119.99833 * 179.79698 * 19 18 3 21 21 C 1.38230 * 120.00063 * 0.42939 * 20 19 18 22 22 C 1.38241 * 120.00275 * 359.82295 * 21 20 19 23 23 C 1.38235 * 119.99961 * 120.00123 * 18 3 2 24 24 H 1.08998 * 109.47140 * 65.35433 * 1 2 3 25 25 H 1.09000 * 109.47616 * 305.34681 * 1 2 3 26 26 H 1.09008 * 109.46883 * 185.34688 * 1 2 3 27 27 H 1.09006 * 109.47015 * 119.99755 * 2 1 3 28 28 H 1.09001 * 109.47605 * 239.99313 * 2 1 3 29 29 H 1.09002 * 109.46949 * 54.43117 * 5 3 2 30 30 H 1.08995 * 109.47050 * 174.42652 * 5 3 2 31 31 H 1.00894 * 110.99969 * 61.98925 * 6 5 3 32 32 H 1.08991 * 109.47147 * 299.99539 * 9 7 6 33 33 H 1.08990 * 109.47172 * 60.00056 * 9 7 6 34 34 H 1.09003 * 109.46749 * 179.97438 * 9 7 6 35 35 H 0.97002 * 120.00013 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00170 * 359.97438 * 19 18 3 37 37 H 1.07995 * 119.99859 * 180.27618 * 20 19 18 38 38 H 1.08002 * 120.00656 * 179.83655 * 21 20 19 39 39 H 1.07990 * 120.00547 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00219 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9832 0.8383 5 6 3.5640 1.4446 0.1341 6 7 3.9406 0.9118 1.4503 7 6 5.3881 1.0289 1.6712 8 1 5.7539 1.9438 1.2050 9 6 6.0976 -0.1774 1.0529 10 6 5.6685 1.0725 3.1512 11 1 4.8530 1.0181 3.8571 12 6 6.9662 1.1806 3.6042 13 7 7.9594 1.2463 2.7445 14 14 7.3139 1.2339 5.4388 15 1 6.8152 -0.0125 6.0735 16 1 8.7773 1.3525 5.6620 17 1 6.6256 2.4048 6.0391 18 6 1.6483 2.1137 -1.2912 19 6 2.0950 1.6064 -2.4970 20 6 1.7323 2.2196 -3.6817 21 6 0.9302 3.3452 -3.6600 22 6 0.4878 3.8556 -2.4538 23 6 0.8471 3.2399 -1.2694 24 1 -0.3633 0.4285 -0.9340 25 1 -0.3634 0.5945 0.8382 26 1 -0.3633 -1.0233 0.0958 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.9984 0.8217 -0.6478 30 1 3.9361 2.4643 0.0349 31 1 3.6351 -0.0442 1.5542 32 1 5.7319 -1.0922 1.5190 33 1 5.8948 -0.2089 -0.0175 34 1 7.1718 -0.0902 1.2164 35 1 8.8724 1.3228 3.0631 36 1 2.7250 0.7293 -2.5138 37 1 2.0776 1.8207 -4.6240 38 1 0.6490 3.8259 -4.5853 39 1 -0.1385 4.7352 -2.4368 40 1 0.5014 3.6386 -0.3271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068607664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = 4.212702 kcal Electronic energy + Delta-G solvation = -17783.215797 eV Core-core repulsion = 15175.833037 eV Total energy + Delta-G solvation = -2607.382760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53100 -36.73482 -34.66753 -32.16281 -30.84305 -30.66523 -29.03730 -26.26910 -25.08961 -22.85030 -22.77789 -22.12492 -20.15651 -19.46796 -16.83395 -16.30013 -15.45057 -14.93074 -14.66376 -14.37763 -14.21556 -13.80497 -13.46571 -13.27381 -12.76595 -12.51089 -12.45914 -12.06256 -11.71354 -11.56813 -11.34653 -11.08497 -10.91917 -10.83496 -10.68517 -10.47113 -10.33345 -10.19378 -10.07880 -9.80574 -8.98560 -8.84174 -8.52924 -8.32526 -7.18372 -5.94940 -3.98199 1.46108 1.47932 3.36655 3.40377 3.43861 3.87609 4.46622 4.81090 4.90378 5.04288 5.15424 5.19257 5.34399 5.34595 5.36610 5.53481 5.61921 5.66055 5.81620 5.92526 5.95294 6.07134 6.13858 6.19506 6.29471 6.41716 6.44598 6.51608 6.57585 6.62622 6.72834 6.85936 6.88638 7.09573 7.14095 7.41844 7.77012 7.92001 8.31790 8.58804 8.66574 9.08812 9.67007 11.12069 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.004602 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.102009 B = 6082.266040 C = 6274.508156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.049 4.049 4 H 0.085 0.915 5 C 0.071 3.929 6 N -0.684 5.684 7 C 0.211 3.789 8 H 0.032 0.968 9 C -0.168 4.168 10 C -0.494 4.494 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C -0.059 4.059 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.117 4.117 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.324 0.676 32 H 0.027 0.973 33 H 0.004 0.996 34 H 0.088 0.912 35 H 0.260 0.740 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 0.655 -10.790 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.068 4.068 4 H 0.104 0.896 5 C -0.059 4.059 6 N -0.314 5.314 7 C 0.104 3.896 8 H 0.050 0.950 9 C -0.228 4.228 10 C -0.533 4.533 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.059 4.059 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.135 4.135 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.046 0.954 33 H 0.023 0.977 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.746 1.266 -10.445 17.310 hybrid contribution 0.709 -0.637 0.260 0.988 sum -13.037 0.629 -10.185 16.556 Atomic orbital electron populations 1.21749 0.96137 1.01037 1.01573 1.21584 0.95629 0.95961 1.02141 1.20328 0.96891 0.95660 0.93929 0.89642 1.21878 0.92306 0.99983 0.91759 1.60786 1.18952 1.24737 1.26916 1.19166 0.80620 0.93794 0.96070 0.94981 1.22425 1.05924 0.99266 0.95143 1.21133 0.92002 1.48794 0.91396 0.92023 1.24956 0.96247 0.95593 0.97768 1.69881 0.99204 1.51252 1.33496 0.86571 0.76798 0.78556 0.85499 1.20392 1.21496 1.20312 1.19969 0.95879 0.94991 0.95103 1.21047 0.99944 1.00285 0.92042 1.21106 0.98526 0.96286 0.97969 1.21063 0.99245 0.97059 0.97743 1.21102 1.00331 0.99840 0.92667 1.21113 0.98539 0.95741 0.98144 0.93094 0.92739 0.93237 0.90990 0.92417 0.96388 0.91756 0.85859 0.95408 0.97702 0.89317 0.93067 0.86241 0.86479 0.86621 0.86464 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.64 37.15 0.36 -1.35 16 2 C -0.12 -1.53 5.19 -26.73 -0.14 -1.66 16 3 C -0.05 -0.72 2.24 -91.77 -0.21 -0.93 16 4 H 0.09 1.31 7.88 -51.93 -0.41 0.90 16 5 C 0.07 1.28 4.69 -3.83 -0.02 1.26 16 6 N -0.68 -14.48 6.17 -107.96 -0.67 -15.15 16 7 C 0.21 5.37 2.57 -68.87 -0.18 5.19 16 8 H 0.03 0.90 7.70 -51.93 -0.40 0.50 16 9 C -0.17 -4.09 8.94 37.16 0.33 -3.76 16 10 C -0.49 -13.82 8.84 -34.44 -0.30 -14.12 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 13 N -0.90 -25.99 11.32 55.43 0.63 -25.36 16 14 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.06 -0.80 3.87 -104.62 -0.41 -1.20 16 19 C -0.12 -1.50 8.70 -39.58 -0.34 -1.84 16 20 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 21 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.12 -1.48 9.67 -39.58 -0.38 -1.86 16 24 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.07 1.01 6.61 -51.93 -0.34 0.66 16 28 H 0.06 0.74 7.23 -51.93 -0.38 0.37 16 29 H 0.02 0.32 7.02 -51.93 -0.36 -0.04 16 30 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 31 H 0.32 6.48 6.86 -39.29 -0.27 6.21 16 32 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.12 1.51 7.14 -52.49 -0.37 1.13 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.39 7.95 -52.49 -0.42 0.97 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -28.84 320.37 -9.35 -38.19 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.55 Total: 5.11 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -2.57 Total: -24.27 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.04 Total: -40.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.84 -9.35 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.402 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds