Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 H 1.09000 * 109.46953 * 54.66015 * 3 2 1 5 5 C 1.52996 * 109.47346 * 174.66445 * 3 2 1 6 6 N 1.46899 * 109.47441 * 294.43274 * 5 3 2 7 7 C 1.46895 * 111.00157 * 185.94828 * 6 5 3 8 8 H 1.09004 * 109.47023 * 34.99835 * 7 6 5 9 9 C 1.53000 * 109.47050 * 274.99790 * 7 6 5 10 10 C 1.50698 * 109.47098 * 154.99364 * 7 6 5 11 11 H 1.07995 * 120.00221 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00134 * 179.97438 * 10 7 6 13 13 N 1.31521 * 119.99770 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00350 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46969 * 59.99966 * 14 12 10 16 16 H 1.48502 * 109.47044 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46688 * 300.00242 * 14 12 10 18 18 C 1.50702 * 109.46719 * 294.66824 * 3 2 1 19 19 C 1.38235 * 119.99767 * 299.72480 * 18 3 2 20 20 C 1.38236 * 119.99833 * 179.79698 * 19 18 3 21 21 C 1.38230 * 120.00063 * 0.42939 * 20 19 18 22 22 C 1.38241 * 120.00275 * 359.82295 * 21 20 19 23 23 C 1.38235 * 119.99961 * 120.00123 * 18 3 2 24 24 H 1.08998 * 109.47140 * 65.35433 * 1 2 3 25 25 H 1.09000 * 109.47616 * 305.34681 * 1 2 3 26 26 H 1.09008 * 109.46883 * 185.34688 * 1 2 3 27 27 H 1.09006 * 109.47015 * 119.99755 * 2 1 3 28 28 H 1.09001 * 109.47605 * 239.99313 * 2 1 3 29 29 H 1.09002 * 109.46949 * 54.43117 * 5 3 2 30 30 H 1.08995 * 109.47050 * 174.42652 * 5 3 2 31 31 H 1.00894 * 110.99969 * 61.98925 * 6 5 3 32 32 H 1.08991 * 109.47147 * 299.99539 * 9 7 6 33 33 H 1.08990 * 109.47172 * 60.00056 * 9 7 6 34 34 H 1.09003 * 109.46749 * 179.97438 * 9 7 6 35 35 H 0.97002 * 120.00013 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00170 * 359.97438 * 19 18 3 37 37 H 1.07995 * 119.99859 * 180.27618 * 20 19 18 38 38 H 1.08002 * 120.00656 * 179.83655 * 21 20 19 39 39 H 1.07990 * 120.00547 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00219 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9832 0.8383 5 6 3.5640 1.4446 0.1341 6 7 3.9406 0.9118 1.4503 7 6 5.3881 1.0289 1.6712 8 1 5.7539 1.9438 1.2050 9 6 6.0976 -0.1774 1.0529 10 6 5.6685 1.0725 3.1512 11 1 4.8530 1.0181 3.8571 12 6 6.9662 1.1806 3.6042 13 7 7.9594 1.2463 2.7445 14 14 7.3139 1.2339 5.4388 15 1 6.8152 -0.0125 6.0735 16 1 8.7773 1.3525 5.6620 17 1 6.6256 2.4048 6.0391 18 6 1.6483 2.1137 -1.2912 19 6 2.0950 1.6064 -2.4970 20 6 1.7323 2.2196 -3.6817 21 6 0.9302 3.3452 -3.6600 22 6 0.4878 3.8556 -2.4538 23 6 0.8471 3.2399 -1.2694 24 1 -0.3633 0.4285 -0.9340 25 1 -0.3634 0.5945 0.8382 26 1 -0.3633 -1.0233 0.0958 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.9984 0.8217 -0.6478 30 1 3.9361 2.4643 0.0349 31 1 3.6351 -0.0442 1.5542 32 1 5.7319 -1.0922 1.5190 33 1 5.8948 -0.2089 -0.0175 34 1 7.1718 -0.0902 1.2164 35 1 8.8724 1.3228 3.0631 36 1 2.7250 0.7293 -2.5138 37 1 2.0776 1.8207 -4.6240 38 1 0.6490 3.8259 -4.5853 39 1 -0.1385 4.7352 -2.4368 40 1 0.5014 3.6386 -0.3271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068607664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = -11.013828 kcal Electronic energy + Delta-G solvation = -17783.876069 eV Core-core repulsion = 15175.833037 eV Total energy + Delta-G solvation = -2608.043031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54115 -38.21474 -36.21021 -34.07808 -31.75792 -31.66138 -30.68913 -27.70924 -27.20563 -24.12180 -23.81736 -23.14645 -22.05976 -20.61639 -18.38620 -17.78143 -16.77666 -16.56121 -15.99834 -15.70644 -15.32367 -15.13690 -14.94072 -14.46081 -14.17531 -13.85002 -13.61269 -13.38376 -13.32714 -13.08694 -12.83803 -12.66086 -12.50038 -12.26605 -12.15916 -12.06512 -11.91789 -11.58727 -11.43166 -11.40758 -10.99307 -10.47721 -9.76022 -9.51965 -8.95300 -8.08791 -6.20388 0.52379 0.56039 1.43903 1.45948 1.53657 2.44855 2.93836 3.19304 3.56935 3.85128 4.01676 4.16309 4.21667 4.23081 4.33683 4.40026 4.56400 4.63845 4.70733 4.72214 4.78095 4.85566 4.88927 5.01057 5.09112 5.11102 5.15235 5.22833 5.28041 5.35214 5.42723 5.45940 5.65872 5.67563 5.69276 5.81880 5.84898 6.19172 6.27531 6.65203 6.84577 6.95574 7.49719 8.96677 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.004602 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.102009 B = 6082.266040 C = 6274.508156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.037 4.037 4 H 0.076 0.924 5 C 0.077 3.923 6 N -0.685 5.685 7 C 0.215 3.785 8 H -0.004 1.004 9 C -0.155 4.155 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.008 3.992 13 N -0.924 5.924 14 Si 0.962 3.038 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.075 4.075 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.042 0.958 31 H 0.333 0.667 32 H 0.033 0.967 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 0.641 -11.301 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.056 4.056 4 H 0.094 0.906 5 C -0.052 4.052 6 N -0.315 5.315 7 C 0.106 3.894 8 H 0.014 0.986 9 C -0.214 4.214 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.788 3.212 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.075 4.075 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.149 4.149 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.138 1.245 -10.965 18.733 hybrid contribution 1.110 -0.587 0.334 1.300 sum -14.027 0.658 -10.631 17.613 Atomic orbital electron populations 1.21673 0.94567 1.01891 1.01615 1.21552 0.96974 0.94700 1.01821 1.20139 0.93906 0.96894 0.94619 0.90557 1.21845 0.94963 0.98340 0.90100 1.60651 1.16331 1.25479 1.29078 1.18936 0.83023 0.92567 0.94829 0.98556 1.22227 1.03882 0.98997 0.96335 1.21433 0.92176 1.49229 0.92592 0.92608 1.25746 0.96025 0.95084 1.02178 1.70015 0.99462 1.51603 1.35351 0.85552 0.76708 0.78788 0.80187 1.19493 1.21009 1.19947 1.19879 0.97240 0.95845 0.94553 1.21146 1.00445 1.00689 0.92544 1.21401 0.98315 0.96416 0.98252 1.21441 0.98244 0.96584 0.98790 1.21424 1.00154 1.00338 0.92244 1.21285 0.98755 0.95633 0.99182 0.92989 0.92744 0.91937 0.91921 0.92036 0.96227 0.93971 0.84878 0.94758 0.95838 0.92006 0.93026 0.86496 0.84454 0.83900 0.84093 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.64 71.98 0.69 -2.35 16 2 C -0.11 -2.90 5.19 30.59 0.16 -2.74 16 3 C -0.04 -1.08 2.24 -11.54 -0.03 -1.10 16 4 H 0.08 2.36 7.88 -2.39 -0.02 2.34 16 5 C 0.08 2.85 4.69 86.30 0.40 3.25 16 6 N -0.68 -29.45 6.17 -495.47 -3.06 -32.51 16 7 C 0.22 11.20 2.57 44.17 0.11 11.31 16 8 H 0.00 -0.21 7.70 -2.39 -0.02 -0.22 16 9 C -0.15 -7.62 8.94 71.98 0.64 -6.97 16 10 C -0.52 -29.21 8.84 25.60 0.23 -28.98 16 11 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 12 C 0.01 0.43 5.30 84.65 0.45 0.88 16 13 N -0.92 -54.22 11.32 21.45 0.24 -53.97 16 14 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 C -0.07 -1.99 3.87 -19.87 -0.08 -2.06 16 19 C -0.13 -3.27 8.70 22.27 0.19 -3.08 16 20 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 21 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 22 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 23 C -0.13 -3.15 9.67 22.27 0.22 -2.94 16 24 H 0.05 1.12 7.57 -2.39 -0.02 1.10 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.71 6.61 -2.38 -0.02 1.70 16 28 H 0.06 1.52 7.23 -2.39 -0.02 1.51 16 29 H 0.02 0.71 7.02 -2.39 -0.02 0.70 16 30 H 0.04 1.72 7.91 -2.39 -0.02 1.70 16 31 H 0.33 13.31 6.86 -89.70 -0.62 12.70 16 32 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 33 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 34 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.12 2.90 7.14 -2.91 -0.02 2.88 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.14 2.14 8.06 -2.92 -0.02 2.11 16 40 H 0.13 2.80 7.95 -2.91 -0.02 2.77 16 Total: -1.00 -61.68 320.37 3.26 -58.42 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.38 Total: 23.39 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 3.67 Total: -41.86 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.82 Total: -86.48 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -61.68 3.26 -58.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.405 kcal (2) G-P(sol) polarization free energy of solvation -61.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds