Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08997 * 109.47259 * 304.99813 * 3 2 1 5 5 C 1.53000 * 109.47328 * 184.99870 * 3 2 1 6 6 N 1.46897 * 109.47165 * 64.99759 * 5 3 2 7 7 C 1.46894 * 111.00227 * 180.02562 * 6 5 3 8 8 H 1.08993 * 109.47494 * 34.99956 * 7 6 5 9 9 C 1.53005 * 109.47082 * 275.00188 * 7 6 5 10 10 C 1.50704 * 109.47245 * 155.00129 * 7 6 5 11 11 H 1.08001 * 119.99988 * 35.00183 * 10 7 6 12 12 C 1.37872 * 120.00019 * 214.99374 * 10 7 6 13 13 N 1.31512 * 120.00119 * 184.91539 * 12 10 7 14 14 Si 1.86802 * 120.00241 * 4.91928 * 12 10 7 15 15 H 1.48496 * 109.47292 * 84.82640 * 14 12 10 16 16 H 1.48494 * 109.47356 * 204.83087 * 14 12 10 17 17 H 1.48500 * 109.46883 * 324.82873 * 14 12 10 18 18 C 1.50703 * 109.47365 * 64.99763 * 3 2 1 19 19 C 1.38241 * 119.99440 * 59.72283 * 18 3 2 20 20 C 1.38236 * 119.99692 * 179.78618 * 19 18 3 21 21 C 1.38242 * 119.99732 * 0.44775 * 20 19 18 22 22 C 1.38229 * 120.00014 * 359.80959 * 21 20 19 23 23 C 1.38227 * 120.00218 * 240.00028 * 18 3 2 24 24 H 1.09005 * 109.46838 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47123 * 300.00014 * 1 2 3 26 26 H 1.09002 * 109.47178 * 60.00109 * 1 2 3 27 27 H 1.09001 * 109.47123 * 239.99986 * 2 1 3 28 28 H 1.09004 * 109.46700 * 120.00099 * 2 1 3 29 29 H 1.09004 * 109.46852 * 305.00502 * 5 3 2 30 30 H 1.08994 * 109.47581 * 184.99997 * 5 3 2 31 31 H 1.00901 * 110.99628 * 56.04786 * 6 5 3 32 32 H 1.08997 * 109.47027 * 55.04576 * 9 7 6 33 33 H 1.09001 * 109.47070 * 295.04139 * 9 7 6 34 34 H 1.08994 * 109.47083 * 175.04594 * 9 7 6 35 35 H 0.96998 * 120.00203 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00283 * 0.02562 * 19 18 3 37 37 H 1.07997 * 120.00404 * 180.27792 * 20 19 18 38 38 H 1.07998 * 119.99931 * 179.82883 * 21 20 19 39 39 H 1.08008 * 120.00063 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00098 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 3.9490 0.8963 -1.4333 7 6 5.4096 0.8820 -1.5896 8 1 5.8759 0.6705 -0.6275 9 6 5.8816 2.2464 -2.0962 10 6 5.7983 -0.1840 -2.5814 11 1 5.1603 -0.3930 -3.4274 12 6 6.9684 -0.8924 -2.4088 13 7 7.3566 -1.7539 -3.3235 14 14 8.0026 -0.6286 -0.8758 15 1 7.4860 -1.4834 0.2231 16 1 9.4140 -0.9902 -1.1624 17 1 7.9300 0.7978 -0.4691 18 6 1.6412 2.1163 1.2877 19 6 2.0720 1.6047 2.4976 20 6 1.7099 2.2253 3.6785 21 6 0.9095 3.3521 3.6500 22 6 0.4745 3.8604 2.4405 23 6 0.8402 3.2424 1.2593 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9953 0.8311 0.6659 30 1 3.9355 2.4654 -0.0366 31 1 3.5098 1.4088 -2.1833 32 1 5.5247 3.0268 -1.4242 33 1 5.4856 2.4194 -3.0968 34 1 6.9709 2.2650 -2.1284 35 1 8.1796 -2.2526 -3.2020 36 1 2.6945 0.7225 2.5199 37 1 2.0501 1.8284 4.6235 38 1 0.6244 3.8354 4.5728 39 1 -0.1512 4.7405 2.4182 40 1 0.5003 3.6396 0.3142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068607668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = 4.976541 kcal Electronic energy + Delta-G solvation = -17871.828328 eV Core-core repulsion = 15264.478691 eV Total energy + Delta-G solvation = -2607.349637 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.58507 -36.81241 -34.76612 -32.17036 -30.90156 -30.65391 -29.64953 -26.52894 -25.17863 -22.93128 -22.64898 -22.16170 -20.02343 -19.61934 -16.93692 -16.82709 -15.43793 -14.96579 -14.76179 -14.43548 -14.13831 -13.59033 -13.56974 -13.32979 -13.01184 -12.64548 -12.47711 -12.35421 -12.08119 -11.73613 -11.35549 -11.19443 -11.10082 -11.02274 -10.77413 -10.65084 -10.34067 -10.27009 -9.99621 -9.71730 -9.13319 -8.90296 -8.61595 -8.48087 -7.32278 -6.02954 -3.99693 1.39940 1.41733 3.30042 3.37918 3.38299 3.81548 4.44335 4.71833 4.83711 4.97898 5.09690 5.14670 5.21659 5.38632 5.45841 5.49661 5.56977 5.64880 5.72683 5.91896 5.94964 6.03418 6.09111 6.20808 6.25650 6.31855 6.32902 6.40386 6.45670 6.50020 6.53254 6.63313 6.74015 6.83491 6.85465 7.04094 7.15983 7.73839 7.99686 8.41070 8.70178 9.05130 9.60317 11.10822 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.005311 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.118729 B = 5270.492362 C = 5539.580482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.047 4.047 4 H 0.073 0.927 5 C 0.065 3.935 6 N -0.672 5.672 7 C 0.180 3.820 8 H 0.035 0.965 9 C -0.170 4.170 10 C -0.489 4.489 11 H 0.076 0.924 12 C 0.070 3.930 13 N -0.902 5.902 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.269 1.269 18 C -0.060 4.060 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.327 0.673 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 9.234 11.855 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.066 4.066 4 H 0.092 0.908 5 C -0.065 4.065 6 N -0.301 5.301 7 C 0.071 3.929 8 H 0.053 0.947 9 C -0.230 4.230 10 C -0.528 4.528 11 H 0.094 0.906 12 C -0.132 4.132 13 N -0.540 5.540 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.194 1.194 18 C -0.061 4.061 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.138 4.138 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.143 0.857 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.958 8.429 12.015 19.578 hybrid contribution 0.884 1.108 0.752 1.605 sum -12.073 9.538 12.767 19.993 Atomic orbital electron populations 1.21797 0.96783 1.01021 1.01130 1.21506 0.94487 0.95101 1.03567 1.20281 0.96288 0.96492 0.93547 0.90816 1.21996 0.92867 0.97064 0.94590 1.60903 1.10903 1.56950 1.01357 1.19647 0.83771 0.92888 0.96561 0.94695 1.22640 1.01364 0.99045 0.99960 1.20865 1.05757 1.17076 1.09105 0.90593 1.24965 0.97265 0.94864 0.96060 1.69890 1.23559 1.26561 1.34022 0.86921 0.79630 0.78799 0.84408 1.20196 1.21579 1.19400 1.19984 0.96000 0.94846 0.95242 1.21085 1.00012 1.00150 0.91958 1.21131 0.98423 0.96149 0.98073 1.21070 0.99216 0.97110 0.97712 1.21089 1.00329 0.99859 0.92676 1.21080 0.98724 0.95916 0.98104 0.93168 0.93377 0.93123 0.89372 0.92413 0.91705 0.96410 0.85663 0.96174 0.93270 0.93332 0.92729 0.85967 0.86394 0.86591 0.86492 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.73 37.16 0.36 -1.46 16 2 C -0.11 -1.54 5.24 -26.73 -0.14 -1.68 16 3 C -0.05 -0.66 2.18 -91.77 -0.20 -0.86 16 4 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 5 C 0.06 1.10 4.62 -3.83 -0.02 1.08 16 6 N -0.67 -13.43 5.60 -107.96 -0.60 -14.03 16 7 C 0.18 4.20 2.24 -68.86 -0.15 4.05 16 8 H 0.04 0.85 4.95 -51.93 -0.26 0.59 16 9 C -0.17 -3.62 9.17 37.16 0.34 -3.28 16 10 C -0.49 -13.69 9.19 -34.44 -0.32 -14.01 16 11 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 14 Si 0.87 21.71 26.99 -169.99 -4.59 17.12 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.27 -6.40 6.82 56.52 0.39 -6.02 16 18 C -0.06 -0.78 3.76 -104.62 -0.39 -1.18 16 19 C -0.11 -1.45 8.71 -39.58 -0.34 -1.80 16 20 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 23 C -0.12 -1.42 9.67 -39.59 -0.38 -1.80 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.43 7.62 -51.93 -0.40 1.03 16 28 H 0.06 0.82 7.21 -51.93 -0.37 0.45 16 29 H 0.06 1.15 7.50 -51.93 -0.39 0.76 16 30 H 0.02 0.31 7.36 -51.93 -0.38 -0.08 16 31 H 0.33 6.12 8.48 -39.29 -0.33 5.79 16 32 H 0.02 0.37 7.35 -51.93 -0.38 -0.01 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.12 1.54 7.13 -52.49 -0.37 1.17 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.12 1.24 7.95 -52.49 -0.42 0.83 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -29.85 321.60 -8.74 -38.59 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.63 Total: 4.61 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.54 Total: -24.27 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.17 Total: -40.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.59 Total: 17.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.85 -8.74 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.566 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds