Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08997 * 109.47259 * 304.99813 * 3 2 1 5 5 C 1.53000 * 109.47328 * 184.99870 * 3 2 1 6 6 N 1.46897 * 109.47165 * 64.99759 * 5 3 2 7 7 C 1.46894 * 111.00227 * 180.02562 * 6 5 3 8 8 H 1.08993 * 109.47494 * 34.99956 * 7 6 5 9 9 C 1.53005 * 109.47082 * 275.00188 * 7 6 5 10 10 C 1.50704 * 109.47245 * 155.00129 * 7 6 5 11 11 H 1.08001 * 119.99988 * 35.00183 * 10 7 6 12 12 C 1.37872 * 120.00019 * 214.99374 * 10 7 6 13 13 N 1.31512 * 120.00119 * 184.91539 * 12 10 7 14 14 Si 1.86802 * 120.00241 * 4.91928 * 12 10 7 15 15 H 1.48496 * 109.47292 * 84.82640 * 14 12 10 16 16 H 1.48494 * 109.47356 * 204.83087 * 14 12 10 17 17 H 1.48500 * 109.46883 * 324.82873 * 14 12 10 18 18 C 1.50703 * 109.47365 * 64.99763 * 3 2 1 19 19 C 1.38241 * 119.99440 * 59.72283 * 18 3 2 20 20 C 1.38236 * 119.99692 * 179.78618 * 19 18 3 21 21 C 1.38242 * 119.99732 * 0.44775 * 20 19 18 22 22 C 1.38229 * 120.00014 * 359.80959 * 21 20 19 23 23 C 1.38227 * 120.00218 * 240.00028 * 18 3 2 24 24 H 1.09005 * 109.46838 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47123 * 300.00014 * 1 2 3 26 26 H 1.09002 * 109.47178 * 60.00109 * 1 2 3 27 27 H 1.09001 * 109.47123 * 239.99986 * 2 1 3 28 28 H 1.09004 * 109.46700 * 120.00099 * 2 1 3 29 29 H 1.09004 * 109.46852 * 305.00502 * 5 3 2 30 30 H 1.08994 * 109.47581 * 184.99997 * 5 3 2 31 31 H 1.00901 * 110.99628 * 56.04786 * 6 5 3 32 32 H 1.08997 * 109.47027 * 55.04576 * 9 7 6 33 33 H 1.09001 * 109.47070 * 295.04139 * 9 7 6 34 34 H 1.08994 * 109.47083 * 175.04594 * 9 7 6 35 35 H 0.96998 * 120.00203 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00283 * 0.02562 * 19 18 3 37 37 H 1.07997 * 120.00404 * 180.27792 * 20 19 18 38 38 H 1.07998 * 119.99931 * 179.82883 * 21 20 19 39 39 H 1.08008 * 120.00063 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00098 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 3.9490 0.8963 -1.4333 7 6 5.4096 0.8820 -1.5896 8 1 5.8759 0.6705 -0.6275 9 6 5.8816 2.2464 -2.0962 10 6 5.7983 -0.1840 -2.5814 11 1 5.1603 -0.3930 -3.4274 12 6 6.9684 -0.8924 -2.4088 13 7 7.3566 -1.7539 -3.3235 14 14 8.0026 -0.6286 -0.8758 15 1 7.4860 -1.4834 0.2231 16 1 9.4140 -0.9902 -1.1624 17 1 7.9300 0.7978 -0.4691 18 6 1.6412 2.1163 1.2877 19 6 2.0720 1.6047 2.4976 20 6 1.7099 2.2253 3.6785 21 6 0.9095 3.3521 3.6500 22 6 0.4745 3.8604 2.4405 23 6 0.8402 3.2424 1.2593 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9953 0.8311 0.6659 30 1 3.9355 2.4654 -0.0366 31 1 3.5098 1.4088 -2.1833 32 1 5.5247 3.0268 -1.4242 33 1 5.4856 2.4194 -3.0968 34 1 6.9709 2.2650 -2.1284 35 1 8.1796 -2.2526 -3.2020 36 1 2.6945 0.7225 2.5199 37 1 2.0501 1.8284 4.6235 38 1 0.6244 3.8354 4.5728 39 1 -0.1512 4.7405 2.4182 40 1 0.5003 3.6396 0.3142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068607668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = -12.060889 kcal Electronic energy + Delta-G solvation = -17872.567126 eV Core-core repulsion = 15264.478691 eV Total energy + Delta-G solvation = -2608.088435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53421 -38.23486 -36.18254 -34.20984 -31.76300 -31.71278 -31.12463 -27.82011 -27.22109 -24.06443 -23.75470 -23.08598 -21.85592 -20.73845 -19.00491 -17.76621 -16.66786 -16.37071 -16.12052 -15.73709 -15.39297 -15.03198 -14.85908 -14.51039 -14.34533 -14.16263 -13.80454 -13.62194 -13.36090 -13.21358 -12.94735 -12.65110 -12.50990 -12.27285 -12.13912 -11.92127 -11.79030 -11.67839 -11.39584 -11.36982 -11.14837 -10.67575 -9.75726 -9.51992 -8.94565 -8.25214 -6.26313 0.52241 0.56179 1.33537 1.34490 1.44015 2.35240 2.93242 3.06567 3.55493 3.80837 4.03296 4.18488 4.22399 4.30100 4.34360 4.41824 4.44954 4.61289 4.64936 4.66805 4.71253 4.74180 4.82757 4.87769 5.00635 5.06184 5.13356 5.17616 5.23938 5.28865 5.41211 5.43515 5.55144 5.66792 5.68547 5.70211 5.85081 6.08261 6.19069 6.68849 6.79040 6.82029 7.37602 8.92354 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.005311 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.118729 B = 5270.492362 C = 5539.580482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.036 4.036 4 H 0.080 0.920 5 C 0.071 3.929 6 N -0.681 5.681 7 C 0.182 3.818 8 H 0.031 0.969 9 C -0.163 4.163 10 C -0.492 4.492 11 H 0.034 0.966 12 C 0.011 3.989 13 N -0.951 5.951 14 Si 0.939 3.061 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.249 1.249 18 C -0.074 4.074 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.128 4.128 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.334 0.666 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 11.370 14.174 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.055 4.055 4 H 0.098 0.902 5 C -0.059 4.059 6 N -0.311 5.311 7 C 0.073 3.927 8 H 0.049 0.951 9 C -0.223 4.223 10 C -0.531 4.531 11 H 0.052 0.948 12 C -0.186 4.186 13 N -0.592 5.592 14 Si 0.764 3.236 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.173 1.173 18 C -0.075 4.075 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.006 10.587 14.340 22.669 hybrid contribution 1.091 0.459 0.013 1.184 sum -12.915 11.046 14.353 22.244 Atomic orbital electron populations 1.21709 0.95003 1.01530 1.01622 1.21436 0.96039 0.95064 1.01926 1.20124 0.93988 0.96555 0.94826 0.90160 1.21980 0.95052 0.96619 0.92237 1.60654 1.08992 1.58269 1.03187 1.19471 0.85798 0.92562 0.94866 0.95113 1.22482 1.00805 0.98349 1.00623 1.21145 1.04994 1.18140 1.08829 0.94801 1.25802 0.98812 0.94724 0.99260 1.70044 1.24493 1.28305 1.36391 0.85877 0.77708 0.79821 0.80240 1.19668 1.21259 1.17270 1.19862 0.97405 0.95753 0.94447 1.21155 1.00643 1.00416 0.92695 1.21386 0.98407 0.96411 0.98230 1.21434 0.98210 0.96573 0.98858 1.21426 1.00076 1.00376 0.92231 1.21275 0.98480 0.95514 0.99296 0.92705 0.92892 0.92491 0.92014 0.92997 0.92773 0.95979 0.84854 0.93284 0.93204 0.94115 0.92676 0.86800 0.84740 0.84049 0.84021 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.73 71.98 0.70 -2.56 16 2 C -0.11 -3.00 5.24 30.59 0.16 -2.84 16 3 C -0.04 -0.98 2.18 -11.54 -0.03 -1.00 16 4 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 5 C 0.07 2.32 4.62 86.30 0.40 2.72 16 6 N -0.68 -27.08 5.60 -495.46 -2.78 -29.86 16 7 C 0.18 8.43 2.24 44.17 0.10 8.53 16 8 H 0.03 1.46 4.95 -2.39 -0.01 1.44 16 9 C -0.16 -6.66 9.17 71.98 0.66 -6.00 16 10 C -0.49 -28.22 9.19 25.60 0.24 -27.99 16 11 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 12 C 0.01 0.63 5.47 84.65 0.46 1.09 16 13 N -0.95 -60.07 13.96 21.45 0.30 -59.78 16 14 Si 0.94 44.86 26.99 68.60 1.85 46.71 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 17 H -0.25 -10.99 6.82 99.48 0.68 -10.31 16 18 C -0.07 -1.80 3.76 -19.87 -0.07 -1.88 16 19 C -0.13 -3.15 8.71 22.27 0.19 -2.96 16 20 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 21 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 22 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 23 C -0.13 -2.68 9.67 22.27 0.22 -2.47 16 24 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.05 1.18 7.38 -2.39 -0.02 1.16 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 2.04 7.62 -2.39 -0.02 2.02 16 28 H 0.05 1.48 7.21 -2.39 -0.02 1.47 16 29 H 0.05 1.89 7.50 -2.38 -0.02 1.88 16 30 H 0.02 0.71 7.36 -2.39 -0.02 0.70 16 31 H 0.33 12.41 8.48 -89.69 -0.76 11.65 16 32 H 0.05 1.71 7.35 -2.39 -0.02 1.69 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.11 2.83 7.13 -2.91 -0.02 2.81 16 37 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.13 2.35 7.95 -2.91 -0.02 2.33 16 Total: -1.00 -65.11 321.60 3.28 -61.83 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.21 Total: 22.88 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 3.70 Total: -41.79 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.48 Total: -89.63 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.85 Total: 46.71 kcal Total: -65.11 3.28 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.773 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds