Wall clock time and date at job start Mon Mar 30 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47367 * 2 1 4 4 C 1.38237 * 120.00237 * 269.72645 * 3 2 1 5 5 C 1.38234 * 119.99925 * 179.76238 * 4 3 2 6 6 C 1.38234 * 119.99997 * 0.49200 * 5 4 3 7 7 C 1.50707 * 119.99713 * 179.76145 * 6 5 4 8 8 N 1.46490 * 109.47164 * 262.65313 * 7 6 5 9 9 C 1.36938 * 120.00135 * 277.56220 * 8 7 6 10 10 H 1.07998 * 120.00148 * 39.14444 * 9 8 7 11 11 C 1.38816 * 119.99973 * 219.14517 * 9 8 7 12 12 N 1.31619 * 120.00048 * 26.43356 * 11 9 8 13 13 Si 1.86802 * 119.99865 * 206.43573 * 11 9 8 14 14 H 1.48500 * 109.47267 * 60.00177 * 13 11 9 15 15 H 1.48501 * 109.46676 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47098 * 299.99544 * 13 11 9 17 17 C 1.46503 * 119.99933 * 97.56739 * 8 7 6 18 18 C 1.53006 * 109.46626 * 298.79024 * 17 8 7 19 19 C 1.52991 * 109.47384 * 58.79062 * 17 8 7 20 20 C 1.38229 * 119.99925 * 359.78872 * 6 5 4 21 21 C 1.38229 * 120.00382 * 359.95158 * 20 6 5 22 22 H 1.08995 * 109.47428 * 59.99263 * 1 2 3 23 23 H 1.09007 * 109.47072 * 299.99744 * 1 2 3 24 24 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47197 * 120.00786 * 2 1 3 26 26 H 1.09003 * 109.47088 * 239.99754 * 2 1 3 27 27 H 1.08005 * 119.99680 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.99776 * 180.25247 * 5 4 3 29 29 H 1.09001 * 109.47039 * 22.65972 * 7 6 5 30 30 H 1.09005 * 109.46368 * 142.65578 * 7 6 5 31 31 H 0.96997 * 120.00124 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.47373 * 178.79693 * 17 8 7 33 33 H 1.08997 * 109.46895 * 69.00477 * 18 17 8 34 34 H 1.08997 * 109.46650 * 188.99792 * 18 17 8 35 35 H 1.08998 * 109.47235 * 308.99631 * 18 17 8 36 36 H 1.09003 * 109.47206 * 63.00596 * 19 17 8 37 37 H 1.09001 * 109.47075 * 183.00673 * 19 17 8 38 38 H 1.09000 * 109.47533 * 303.00602 * 19 17 8 39 39 H 1.08008 * 119.99799 * 179.97438 * 20 6 5 40 40 H 1.08001 * 120.00368 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4568 5.4480 0.0000 8 7 4.9109 5.4517 0.1771 9 6 5.4481 5.3478 1.4324 10 1 5.0007 4.6849 2.1581 11 6 6.5678 6.0947 1.7722 12 7 6.8118 7.2322 1.1567 13 14 7.7284 5.4852 3.1031 14 1 8.2835 4.1653 2.7094 15 1 8.8380 6.4569 3.2751 16 1 6.9865 5.3487 4.3823 17 6 5.7905 5.5668 -0.9888 18 6 5.5579 4.3770 -1.9223 19 6 5.4827 6.8672 -1.7336 20 6 2.7241 3.3755 1.1971 21 6 2.2628 2.0724 1.1972 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5140 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 2.0919 1.5600 -2.1325 28 1 2.9047 3.8845 -2.1324 29 1 3.2049 5.9224 -0.9484 30 1 2.9898 5.9984 0.8169 31 1 7.5944 7.7538 1.3939 32 1 6.8299 5.5732 -0.6606 33 1 4.5700 4.4585 -2.3755 34 1 6.3173 4.3750 -2.7043 35 1 5.6210 3.4501 -1.3523 36 1 5.6993 7.7168 -1.0860 37 1 6.0997 6.9272 -2.6302 38 1 4.4299 6.8842 -2.0153 39 1 2.9042 3.8846 2.1325 40 1 2.0833 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070216264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:05 Heat of formation + Delta-G solvation = 25.582786 kcal Electronic energy + Delta-G solvation = -18354.552024 eV Core-core repulsion = 15748.095940 eV Total energy + Delta-G solvation = -2606.456083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.04038 -36.47547 -33.90967 -31.95762 -30.87919 -30.32033 -28.67453 -26.13853 -25.56938 -23.40414 -22.14972 -22.11197 -20.24179 -19.03645 -16.69943 -15.64748 -15.07814 -14.72163 -14.69723 -13.99262 -13.62973 -13.50171 -13.37078 -12.89151 -12.68824 -12.60872 -12.16011 -11.78043 -11.54419 -11.47842 -11.26966 -11.06018 -10.98709 -10.75147 -10.62071 -10.46800 -10.27827 -10.15522 -9.94652 -9.75720 -9.32742 -8.37995 -8.32503 -7.88590 -6.53231 -5.80565 -3.29383 1.94168 1.99077 3.38601 3.44992 3.48777 4.29836 4.55416 5.00719 5.07043 5.30023 5.42664 5.44183 5.51905 5.62721 5.68664 5.76863 5.86310 5.89117 6.07173 6.18155 6.19848 6.22254 6.35824 6.41504 6.49194 6.61389 6.64733 6.68327 6.79430 6.82105 6.91597 7.03444 7.08349 7.10789 7.42241 7.51731 7.62598 7.68373 7.91037 8.56273 9.24427 9.85446 10.47856 11.22855 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.006711 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.093450 B = 4171.494457 C = 4864.822851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.104 4.104 4 C -0.125 4.125 5 C -0.115 4.115 6 C -0.074 4.074 7 C 0.176 3.824 8 N -0.570 5.570 9 C -0.270 4.270 10 H 0.058 0.942 11 C 0.024 3.976 12 N -0.877 5.877 13 Si 0.887 3.113 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.186 3.814 18 C -0.165 4.165 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.124 4.124 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.031 0.969 39 H 0.119 0.881 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -8.965 -4.395 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.105 4.105 4 C -0.144 4.144 5 C -0.133 4.133 6 C -0.077 4.077 7 C 0.050 3.950 8 N -0.290 5.290 9 C -0.399 4.399 10 H 0.076 0.924 11 C -0.178 4.178 12 N -0.517 5.517 13 Si 0.716 3.284 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.080 3.920 18 C -0.224 4.224 19 C -0.212 4.212 20 C -0.118 4.118 21 C -0.142 4.142 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.137 0.863 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.617 -8.782 -4.369 13.057 hybrid contribution 0.831 -0.351 0.664 1.120 sum -7.786 -9.133 -3.705 12.561 Atomic orbital electron populations 1.21739 0.95309 1.01012 1.02110 1.20453 0.95703 0.93455 1.02113 1.19662 1.01599 0.95761 0.93439 1.20850 1.01529 0.95220 0.96751 1.21066 0.99843 0.94569 0.97832 1.21113 0.94438 0.99879 0.92285 1.19823 0.86870 0.88969 0.99358 1.43741 0.97893 1.84804 1.02568 1.18881 1.11447 1.19068 0.90514 0.92429 1.25139 1.01254 0.94057 0.97360 1.70131 1.27183 1.10316 1.44113 0.86638 0.81128 0.78461 0.82161 1.20950 1.21726 1.20710 1.20165 0.95712 0.90241 0.85912 1.22551 0.99572 1.01017 0.99250 1.22175 0.98403 1.01744 0.98902 1.21070 0.98045 0.94291 0.98378 1.20926 1.01130 0.95295 0.96816 0.92725 0.92675 0.92978 0.91615 0.91677 0.87338 0.86725 0.93484 0.93081 0.93669 0.90847 0.93865 0.94657 0.93264 0.90596 0.95256 0.95044 0.86269 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.12 16 2 C -0.08 -0.94 6.06 -27.89 -0.17 -1.11 16 3 C -0.10 -1.57 5.13 -104.62 -0.54 -2.10 16 4 C -0.13 -1.94 9.70 -39.58 -0.38 -2.32 16 5 C -0.11 -1.96 8.24 -39.58 -0.33 -2.28 16 6 C -0.07 -1.42 5.12 -104.62 -0.54 -1.95 16 7 C 0.18 3.72 5.17 -5.20 -0.03 3.69 16 8 N -0.57 -13.77 2.31 -167.02 -0.39 -14.15 16 9 C -0.27 -7.22 9.25 -15.06 -0.14 -7.36 16 10 H 0.06 1.55 7.09 -52.49 -0.37 1.18 16 11 C 0.02 0.65 4.56 -17.43 -0.08 0.57 16 12 N -0.88 -24.63 11.67 55.49 0.65 -23.98 16 13 Si 0.89 21.43 29.63 -169.99 -5.04 16.39 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.19 4.27 2.45 -67.93 -0.17 4.10 16 18 C -0.16 -3.24 8.06 37.16 0.30 -2.94 16 19 C -0.15 -3.27 9.17 37.15 0.34 -2.93 16 20 C -0.10 -1.84 9.30 -39.59 -0.37 -2.21 16 21 C -0.12 -2.01 9.70 -39.58 -0.38 -2.39 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.11 1.85 6.27 -52.48 -0.33 1.52 16 29 H 0.05 0.94 6.23 -51.93 -0.32 0.61 16 30 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.07 1.91 6.72 -51.93 -0.35 1.56 16 33 H 0.04 0.78 5.39 -51.93 -0.28 0.50 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.83 7.31 -51.93 -0.38 1.45 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.62 6.52 -51.93 -0.34 0.28 16 39 H 0.12 2.26 7.55 -52.48 -0.40 1.87 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -27.87 317.35 -8.65 -36.51 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.54 Total: 0.80 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.11 Total: -20.35 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.26 Total: -38.13 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.87 -8.65 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070216264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.097 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds