Wall clock time and date at job start Mon Mar 30 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47367 * 2 1 4 4 C 1.38237 * 120.00237 * 269.72645 * 3 2 1 5 5 C 1.38234 * 119.99925 * 179.76238 * 4 3 2 6 6 C 1.38234 * 119.99997 * 0.49200 * 5 4 3 7 7 C 1.50707 * 119.99713 * 179.76145 * 6 5 4 8 8 N 1.46490 * 109.47164 * 262.65313 * 7 6 5 9 9 C 1.36938 * 120.00135 * 277.56220 * 8 7 6 10 10 H 1.07998 * 120.00148 * 39.14444 * 9 8 7 11 11 C 1.38816 * 119.99973 * 219.14517 * 9 8 7 12 12 N 1.31619 * 120.00048 * 26.43356 * 11 9 8 13 13 Si 1.86802 * 119.99865 * 206.43573 * 11 9 8 14 14 H 1.48500 * 109.47267 * 60.00177 * 13 11 9 15 15 H 1.48501 * 109.46676 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47098 * 299.99544 * 13 11 9 17 17 C 1.46503 * 119.99933 * 97.56739 * 8 7 6 18 18 C 1.53006 * 109.46626 * 298.79024 * 17 8 7 19 19 C 1.52991 * 109.47384 * 58.79062 * 17 8 7 20 20 C 1.38229 * 119.99925 * 359.78872 * 6 5 4 21 21 C 1.38229 * 120.00382 * 359.95158 * 20 6 5 22 22 H 1.08995 * 109.47428 * 59.99263 * 1 2 3 23 23 H 1.09007 * 109.47072 * 299.99744 * 1 2 3 24 24 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47197 * 120.00786 * 2 1 3 26 26 H 1.09003 * 109.47088 * 239.99754 * 2 1 3 27 27 H 1.08005 * 119.99680 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.99776 * 180.25247 * 5 4 3 29 29 H 1.09001 * 109.47039 * 22.65972 * 7 6 5 30 30 H 1.09005 * 109.46368 * 142.65578 * 7 6 5 31 31 H 0.96997 * 120.00124 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.47373 * 178.79693 * 17 8 7 33 33 H 1.08997 * 109.46895 * 69.00477 * 18 17 8 34 34 H 1.08997 * 109.46650 * 188.99792 * 18 17 8 35 35 H 1.08998 * 109.47235 * 308.99631 * 18 17 8 36 36 H 1.09003 * 109.47206 * 63.00596 * 19 17 8 37 37 H 1.09001 * 109.47075 * 183.00673 * 19 17 8 38 38 H 1.09000 * 109.47533 * 303.00602 * 19 17 8 39 39 H 1.08008 * 119.99799 * 179.97438 * 20 6 5 40 40 H 1.08001 * 120.00368 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4568 5.4480 0.0000 8 7 4.9109 5.4517 0.1771 9 6 5.4481 5.3478 1.4324 10 1 5.0007 4.6849 2.1581 11 6 6.5678 6.0947 1.7722 12 7 6.8118 7.2322 1.1567 13 14 7.7284 5.4852 3.1031 14 1 8.2835 4.1653 2.7094 15 1 8.8380 6.4569 3.2751 16 1 6.9865 5.3487 4.3823 17 6 5.7905 5.5668 -0.9888 18 6 5.5579 4.3770 -1.9223 19 6 5.4827 6.8672 -1.7336 20 6 2.7241 3.3755 1.1971 21 6 2.2628 2.0724 1.1972 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5140 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 2.0919 1.5600 -2.1325 28 1 2.9047 3.8845 -2.1324 29 1 3.2049 5.9224 -0.9484 30 1 2.9898 5.9984 0.8169 31 1 7.5944 7.7538 1.3939 32 1 6.8299 5.5732 -0.6606 33 1 4.5700 4.4585 -2.3755 34 1 6.3173 4.3750 -2.7043 35 1 5.6210 3.4501 -1.3523 36 1 5.6993 7.7168 -1.0860 37 1 6.0997 6.9272 -2.6302 38 1 4.4299 6.8842 -2.0153 39 1 2.9042 3.8846 2.1325 40 1 2.0833 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070216264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:04 Heat of formation + Delta-G solvation = 13.247863 kcal Electronic energy + Delta-G solvation = -18355.086906 eV Core-core repulsion = 15748.095940 eV Total energy + Delta-G solvation = -2606.990966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37540 -38.17501 -35.11945 -33.92071 -32.40662 -31.63787 -30.18712 -27.81209 -27.15146 -25.01534 -23.52383 -23.41830 -21.60060 -20.77298 -18.57385 -16.92821 -16.72769 -16.41407 -16.04332 -15.66206 -15.41135 -14.64396 -14.51020 -14.37542 -14.07687 -14.04147 -13.61309 -13.47158 -13.06863 -12.97656 -12.78646 -12.64794 -12.47332 -12.39694 -12.08658 -11.97650 -11.79440 -11.63643 -11.56724 -11.51057 -11.09387 -10.41816 -9.63576 -9.24331 -8.48831 -7.83597 -5.36342 0.63039 0.67643 1.43347 1.46908 1.53017 2.51284 3.00328 3.23124 3.83537 3.98506 4.01871 4.25862 4.32308 4.33624 4.46161 4.59467 4.61203 4.70415 4.74929 4.81966 4.85916 4.91902 4.94880 5.09921 5.10717 5.13445 5.18176 5.20550 5.32711 5.37967 5.38163 5.45606 5.66289 5.69487 5.77830 5.85215 5.95061 6.01963 6.31909 6.51542 7.23812 7.91660 8.47956 9.14720 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.006711 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.093450 B = 4171.494457 C = 4864.822851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.098 4.098 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.095 4.095 7 C 0.181 3.819 8 N -0.584 5.584 9 C -0.274 4.274 10 H 0.048 0.952 11 C -0.021 4.021 12 N -0.903 5.903 13 Si 0.943 3.057 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.277 1.277 17 C 0.182 3.818 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.120 4.120 21 C -0.129 4.129 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.250 0.750 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -11.232 -5.739 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.099 4.099 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.098 4.098 7 C 0.056 3.944 8 N -0.304 5.304 9 C -0.404 4.404 10 H 0.066 0.934 11 C -0.220 4.220 12 N -0.545 5.545 13 Si 0.771 3.229 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.076 3.924 18 C -0.207 4.207 19 C -0.200 4.200 20 C -0.139 4.139 21 C -0.147 4.147 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.118 0.882 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.631 -11.064 -5.717 15.743 hybrid contribution 1.053 0.297 1.066 1.527 sum -8.578 -10.766 -4.651 14.530 Atomic orbital electron populations 1.21715 0.94028 1.02324 1.01812 1.20531 0.96686 0.91164 1.03247 1.20092 0.99776 0.97287 0.92701 1.21199 1.00283 0.94534 0.98221 1.21176 0.99704 0.95400 0.97232 1.20838 0.96611 0.98797 0.93517 1.19776 0.85079 0.90616 0.98963 1.43898 0.99293 1.85132 1.02123 1.19035 1.11610 1.18230 0.91558 0.93441 1.25728 1.02538 0.94248 0.99487 1.70235 1.27384 1.11169 1.45712 0.85756 0.79332 0.77588 0.80234 1.21107 1.21778 1.20250 1.20172 0.93514 0.92448 0.86269 1.22338 1.01351 0.98357 0.98692 1.22011 0.99747 0.99461 0.98829 1.21054 0.99604 0.95609 0.97610 1.21137 1.00730 0.94407 0.98445 0.92745 0.93305 0.90912 0.90914 0.90194 0.84350 0.85652 0.92358 0.95221 0.94142 0.94664 0.91986 0.92568 0.94821 0.94028 0.92934 0.93540 0.88185 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 2 C -0.08 -1.57 6.06 29.84 0.18 -1.39 16 3 C -0.10 -2.68 5.13 -19.87 -0.10 -2.78 16 4 C -0.12 -3.45 9.70 22.27 0.22 -3.23 16 5 C -0.12 -3.75 8.24 22.27 0.18 -3.57 16 6 C -0.10 -3.61 5.12 -19.87 -0.10 -3.71 16 7 C 0.18 7.77 5.17 85.64 0.44 8.22 16 8 N -0.58 -28.75 2.31 -682.34 -1.58 -30.33 16 9 C -0.27 -15.11 9.25 84.03 0.78 -14.33 16 10 H 0.05 2.67 7.09 -2.91 -0.02 2.65 16 11 C -0.02 -1.16 4.56 84.86 0.39 -0.77 16 12 N -0.90 -52.27 11.67 21.65 0.25 -52.02 16 13 Si 0.94 45.11 29.63 68.60 2.03 47.14 16 14 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 C 0.18 8.37 2.45 44.99 0.11 8.48 16 18 C -0.15 -5.59 8.06 71.98 0.58 -5.01 16 19 C -0.14 -5.98 9.17 71.98 0.66 -5.32 16 20 C -0.12 -4.50 9.30 22.27 0.21 -4.29 16 21 C -0.13 -4.04 9.70 22.27 0.22 -3.82 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 26 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.13 3.69 6.27 -2.91 -0.02 3.67 16 29 H 0.06 2.30 6.23 -2.39 -0.01 2.29 16 30 H 0.03 1.36 8.09 -2.38 -0.02 1.34 16 31 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.03 1.87 6.72 -2.39 -0.02 1.86 16 33 H 0.06 2.08 5.39 -2.39 -0.01 2.06 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 2.03 7.31 -2.39 -0.02 2.01 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.78 6.52 -2.39 -0.02 1.76 16 39 H 0.10 4.01 7.55 -2.91 -0.02 3.99 16 40 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -61.01 317.35 6.17 -54.84 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.99 Total: 13.60 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.47 Total: -33.23 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.32 Total: -82.34 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.01 6.17 -54.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070216264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.085 kcal (2) G-P(sol) polarization free energy of solvation -61.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds