Wall clock time and date at job start Mon Mar 30 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47021 * 2 1 4 4 C 1.53006 * 109.47196 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99810 * 270.00306 * 5 4 3 7 7 C 1.53002 * 109.46869 * 269.99977 * 6 5 4 8 8 C 1.50700 * 109.47183 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00084 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99968 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00287 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99683 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46888 * 60.00120 * 12 10 8 14 14 H 1.48501 * 109.46826 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47257 * 299.99927 * 12 10 8 16 16 C 1.39672 * 119.99644 * 90.00174 * 5 4 3 17 17 C 1.38918 * 120.07035 * 179.97438 * 16 5 4 18 18 C 1.38103 * 119.92232 * 180.26003 * 17 16 5 19 19 C 1.38291 * 120.07426 * 359.43747 * 18 17 16 20 20 C 1.38281 * 120.14889 * 0.56232 * 19 18 17 21 21 C 1.38103 * 120.07737 * 359.72142 * 20 19 18 22 22 H 1.09008 * 109.47090 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47237 * 299.99669 * 1 2 3 24 24 H 1.08995 * 109.47369 * 60.00612 * 1 2 3 25 25 H 1.09001 * 109.47673 * 240.00170 * 2 1 3 26 26 H 1.09007 * 109.47413 * 120.00081 * 2 1 3 27 27 H 1.09004 * 109.47193 * 60.00238 * 3 2 1 28 28 H 1.09002 * 109.47177 * 299.99791 * 3 2 1 29 29 H 1.08997 * 109.46986 * 60.00378 * 4 3 2 30 30 H 1.08993 * 109.47306 * 300.00074 * 4 3 2 31 31 H 1.08998 * 109.47261 * 29.99830 * 6 5 4 32 32 H 1.08996 * 109.46806 * 150.00562 * 6 5 4 33 33 H 1.09003 * 109.47500 * 300.00137 * 7 6 5 34 34 H 1.09001 * 109.47367 * 60.00504 * 7 6 5 35 35 H 0.96994 * 120.00418 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.03585 * 359.97438 * 17 16 5 37 37 H 1.08004 * 119.95970 * 179.72372 * 18 17 16 38 38 H 1.07994 * 119.92283 * 180.28458 * 19 18 17 39 39 H 1.07998 * 119.96595 * 179.74375 * 20 19 18 40 40 H 1.08001 * 120.04036 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3028 3.5137 -1.2690 7 6 5.7480 3.2730 -1.7100 8 6 5.9999 3.9831 -3.0151 9 1 5.2085 4.5498 -3.4831 10 6 7.2410 3.9103 -3.6113 11 7 8.2051 3.2216 -3.0407 12 14 7.5533 4.7912 -5.2287 13 1 7.3255 6.2478 -5.0510 14 1 8.9563 4.5585 -5.6561 15 1 6.6266 4.2679 -6.2643 16 6 4.2905 3.4829 1.2094 17 6 4.7540 4.7925 1.2106 18 6 4.9877 5.4394 2.4081 19 6 4.7498 4.7890 3.6051 20 6 4.2884 3.4854 3.6075 21 6 4.0581 2.8306 2.4136 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9336 0.9286 -0.8891 30 1 3.9329 0.9289 0.8908 31 1 3.6224 3.1291 -2.0287 32 1 4.1358 4.5829 -1.1393 33 1 6.4286 3.6576 -0.9503 34 1 5.9151 2.2037 -1.8397 35 1 9.0783 3.1706 -3.4599 36 1 4.9357 5.3025 0.2761 37 1 5.3523 6.4560 2.4097 38 1 4.9291 5.2988 4.5401 39 1 4.1076 2.9789 4.5440 40 1 3.6982 1.8123 2.4161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070247830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:09 Heat of formation + Delta-G solvation = -8.368740 kcal Electronic energy + Delta-G solvation = -17738.111035 eV Core-core repulsion = 15130.182704 eV Total energy + Delta-G solvation = -2607.928332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53422 -37.85396 -35.95958 -34.90853 -32.45357 -31.50685 -30.76771 -28.74645 -26.50868 -24.60170 -23.51643 -22.66294 -22.04932 -20.95306 -18.75471 -18.38149 -16.64649 -16.58862 -16.32785 -16.12641 -15.38205 -15.29656 -14.67730 -14.51460 -14.36369 -13.99096 -13.91187 -13.59219 -13.43993 -13.27042 -12.81312 -12.65859 -12.33822 -12.20890 -12.14459 -11.92439 -11.90790 -11.76478 -11.53961 -11.44294 -11.25296 -10.59680 -10.52911 -9.72231 -8.25321 -8.02612 -6.35168 0.64092 0.84005 1.38958 1.42196 1.50057 2.28173 2.44535 3.10829 3.11119 3.90942 3.98237 4.09009 4.20380 4.26368 4.30709 4.42857 4.44096 4.61879 4.66644 4.72127 4.74948 4.83854 4.86266 4.95544 4.96414 5.01545 5.11178 5.23660 5.29366 5.36986 5.41802 5.46715 5.51993 5.58334 5.71115 5.77772 5.83701 6.09974 6.17649 6.52464 6.76231 6.83052 7.34814 8.89447 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.006371 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.519760 B = 4393.991746 C = 5841.852525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.629 5.629 6 C 0.143 3.857 7 C 0.024 3.976 8 C -0.544 4.544 9 H 0.065 0.935 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.966 3.034 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.206 3.794 17 C -0.223 4.223 18 C -0.082 4.082 19 C -0.193 4.193 20 C -0.075 4.075 21 C -0.212 4.212 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.062 0.938 33 H -0.016 1.016 34 H -0.014 1.014 35 H 0.263 0.737 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -2.803 10.643 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.163 4.163 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.021 3.979 7 C -0.014 4.014 8 C -0.582 4.582 9 H 0.083 0.917 10 C -0.195 4.195 11 N -0.573 5.573 12 Si 0.791 3.209 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.103 3.897 17 C -0.246 4.246 18 C -0.100 4.100 19 C -0.212 4.212 20 C -0.094 4.094 21 C -0.235 4.235 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.002 0.998 34 H 0.005 0.995 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.553 -2.957 10.433 16.588 hybrid contribution 0.785 0.408 -1.150 1.451 sum -11.768 -2.549 9.283 15.204 Atomic orbital electron populations 1.21735 0.94933 1.02144 1.01759 1.21451 0.96622 0.95192 1.02478 1.21940 0.94507 0.97995 1.01876 1.21524 0.94472 0.81861 1.02309 1.46881 1.70287 1.13638 1.02937 1.21342 0.96537 0.96262 0.83805 1.19250 0.92645 0.94821 0.94728 1.21541 0.97512 1.31961 1.07223 0.91726 1.25976 0.95872 0.96064 1.01628 1.70111 1.03560 1.42446 1.41149 0.85483 0.77232 0.79181 0.79050 1.19120 1.20951 1.18903 1.18187 0.93191 0.91664 0.86625 1.20896 1.09363 0.95255 0.99065 1.21120 0.97051 0.99931 0.91931 1.21146 1.05998 0.96168 0.97936 1.21199 0.95998 0.94567 0.97605 1.20869 1.10451 1.01215 0.90945 0.91666 0.92548 0.93176 0.92075 0.91023 0.91908 0.92940 0.92141 0.90241 0.91437 0.91977 0.99757 0.99536 0.92788 0.87888 0.85166 0.84192 0.83516 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.35 5.93 30.59 0.18 -2.17 16 3 C -0.12 -3.09 5.54 30.60 0.17 -2.92 16 4 C 0.12 3.70 5.16 86.38 0.45 4.15 16 5 N -0.63 -23.49 2.61 -697.28 -1.82 -25.31 16 6 C 0.14 6.15 5.10 86.38 0.44 6.59 16 7 C 0.02 1.29 5.30 29.85 0.16 1.45 16 8 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 9 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 10 C 0.00 0.16 5.46 84.66 0.46 0.62 16 11 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 12 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 16 C 0.21 7.51 6.55 38.22 0.25 7.77 16 17 C -0.22 -8.39 9.21 22.40 0.21 -8.18 16 18 C -0.08 -2.55 10.04 22.25 0.22 -2.33 16 19 C -0.19 -5.13 10.04 22.29 0.22 -4.90 16 20 C -0.08 -1.95 10.04 22.25 0.22 -1.73 16 21 C -0.21 -6.41 9.21 22.40 0.21 -6.20 16 22 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 30 H 0.08 2.21 6.20 -2.39 -0.01 2.20 16 31 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 32 H 0.06 2.65 6.20 -2.39 -0.01 2.63 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.10 4.26 6.14 -2.91 -0.02 4.24 16 37 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.13 3.45 6.14 -2.91 -0.02 3.43 16 Total: -1.00 -65.96 327.67 5.61 -60.35 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.98 Total: 16.55 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 4.14 Total: -40.50 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -1.53 Total: -82.79 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.96 5.61 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070247830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.979 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds