Wall clock time and date at job start Mon Mar 30 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47190 * 2 1 4 4 C 1.52996 * 109.47131 * 240.00177 * 2 1 3 5 5 C 1.50698 * 109.47558 * 119.99944 * 2 1 3 6 6 C 1.38125 * 120.03425 * 0.74829 * 5 2 1 7 7 C 1.38272 * 120.07489 * 179.74547 * 6 5 2 8 8 C 1.38306 * 120.14726 * 0.55893 * 7 6 5 9 9 C 1.38085 * 120.07594 * 359.69790 * 8 7 6 10 10 C 1.38893 * 120.04053 * 181.02971 * 5 2 1 11 11 N 1.39671 * 120.07423 * 359.95283 * 10 5 2 12 12 C 1.46499 * 120.00063 * 175.47430 * 11 10 5 13 13 C 1.52994 * 109.47096 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47060 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00138 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99897 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99905 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46990 * 59.99638 * 18 16 14 20 20 H 1.48491 * 109.47322 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47317 * 299.99833 * 18 16 14 22 22 H 1.09002 * 109.47010 * 300.00243 * 1 2 3 23 23 H 1.08998 * 109.47223 * 59.99951 * 1 2 3 24 24 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47154 * 185.29906 * 3 2 1 26 26 H 1.09007 * 109.46728 * 305.29401 * 3 2 1 27 27 H 1.08993 * 109.47109 * 65.29601 * 3 2 1 28 28 H 1.09004 * 109.47061 * 307.74056 * 4 2 1 29 29 H 1.08999 * 109.47519 * 67.73914 * 4 2 1 30 30 H 1.08999 * 109.47305 * 187.74320 * 4 2 1 31 31 H 1.07998 * 119.96299 * 0.02789 * 6 5 2 32 32 H 1.07997 * 119.92367 * 180.28255 * 7 6 5 33 33 H 1.07996 * 119.96648 * 179.72557 * 8 7 6 34 34 H 1.08001 * 120.03917 * 180.02562 * 9 8 7 35 35 H 0.97003 * 119.99681 * 355.47959 * 11 10 5 36 36 H 1.08998 * 109.47145 * 299.99950 * 12 11 10 37 37 H 1.09000 * 109.46806 * 60.00055 * 12 11 10 38 38 H 1.08998 * 109.47428 * 299.99605 * 13 12 11 39 39 H 1.09000 * 109.47321 * 60.00281 * 13 12 11 40 40 H 0.97006 * 119.99983 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1356 -1.2491 2.1323 7 6 1.5957 -1.9056 3.2589 8 6 2.9545 -2.0152 3.4926 9 6 3.8564 -1.4743 2.5977 10 6 3.3976 -0.8190 1.4618 11 7 4.3071 -0.2711 0.5544 12 6 5.7420 -0.2990 0.8483 13 6 6.5103 0.3611 -0.2983 14 6 7.9865 0.3319 0.0038 15 1 8.3411 -0.1126 0.9219 16 6 8.8842 0.8735 -0.8916 17 7 8.4524 1.4153 -2.0094 18 14 10.7140 0.8367 -0.5175 19 1 11.1606 -0.5718 -0.3693 20 1 11.4598 1.4774 -1.6303 21 1 10.9763 1.5745 0.7442 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1258 1.4440 -0.0949 26 1 1.6012 1.9830 -0.8389 27 1 1.7562 1.9282 0.9336 28 1 1.5680 -1.7011 -1.3212 29 1 1.7940 -0.1337 -2.1338 30 1 3.1211 -0.8427 -1.1827 31 1 0.0739 -1.1614 1.9551 32 1 0.8924 -2.3299 3.9601 33 1 3.3106 -2.5248 4.3757 34 1 4.9173 -1.5606 2.7806 35 1 3.9886 0.1279 -0.2704 36 1 5.9339 0.2439 1.7737 37 1 6.0702 -1.3325 0.9586 38 1 6.3186 -0.1815 -1.2240 39 1 6.1820 1.3946 -0.4082 40 1 9.0840 1.7967 -2.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070569842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:44 Heat of formation + Delta-G solvation = -2.332711 kcal Electronic energy + Delta-G solvation = -18074.254739 eV Core-core repulsion = 15466.588149 eV Total energy + Delta-G solvation = -2607.666590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14284 -37.17565 -37.11703 -35.03270 -32.15240 -30.87927 -29.24208 -28.35385 -28.16170 -26.25187 -23.91714 -22.98725 -22.04868 -20.09979 -18.71063 -17.80041 -17.22126 -16.47371 -16.16833 -15.85859 -15.11296 -15.05660 -14.88349 -14.75043 -14.34884 -14.17519 -13.95247 -13.18358 -13.13282 -13.03349 -12.86999 -12.59174 -12.56059 -12.51066 -12.30467 -12.14755 -11.82293 -11.59602 -11.55145 -11.37781 -11.15763 -10.82041 -10.56509 -9.56557 -8.25639 -8.15566 -6.37308 0.62333 0.85675 1.39944 1.42769 1.50742 2.36140 2.72217 3.06763 3.08861 3.78267 3.91273 4.13114 4.20008 4.32755 4.42331 4.43947 4.50384 4.65743 4.67924 4.70551 4.83365 4.86767 4.88977 4.96962 4.99750 5.03328 5.13774 5.20153 5.32607 5.35181 5.40621 5.41448 5.55122 5.65245 5.70636 5.76788 5.85604 6.09435 6.16926 6.55491 6.76705 6.94963 7.32594 8.86508 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.005219 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.868295 B = 5363.224769 C = 6140.911634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 C -0.148 4.148 4 C -0.151 4.151 5 C -0.163 4.163 6 C -0.078 4.078 7 C -0.189 4.189 8 C -0.082 4.082 9 C -0.223 4.223 10 C 0.205 3.795 11 N -0.747 5.747 12 C 0.145 3.855 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.266 1.266 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.402 0.598 36 H 0.044 0.956 37 H 0.045 0.955 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 -4.496 6.662 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 C -0.206 4.206 4 C -0.209 4.209 5 C -0.167 4.167 6 C -0.096 4.096 7 C -0.209 4.209 8 C -0.100 4.100 9 C -0.246 4.246 10 C 0.100 3.900 11 N -0.382 5.382 12 C 0.020 3.980 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.244 0.756 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.063 -4.408 6.535 17.893 hybrid contribution 1.341 0.323 -0.451 1.451 sum -14.722 -4.084 6.084 16.445 Atomic orbital electron populations 1.21875 0.92067 1.02531 1.02566 1.19344 0.97235 0.93772 0.91682 1.22044 1.00465 0.95781 1.02279 1.22065 1.00450 1.01020 0.97329 1.19546 0.90689 1.06683 0.99800 1.21189 0.99873 0.95516 0.93001 1.21155 0.95378 1.04633 0.99690 1.21108 0.93455 0.97306 0.98145 1.20830 1.00032 1.06575 0.97139 1.18068 0.89556 0.92312 0.90032 1.45685 1.04800 1.64913 1.22766 1.21191 0.79602 0.98946 0.98237 1.19074 0.94664 0.94510 0.93132 1.21444 0.92316 1.38956 1.05656 0.91821 1.25943 1.04354 0.94455 0.94636 1.70079 1.36606 1.39531 1.10701 0.85453 0.78509 0.78829 0.77988 1.19135 1.20735 1.19129 0.91670 0.91534 0.91515 0.94128 0.91020 0.92578 0.91802 0.91248 0.94153 0.83617 0.84179 0.84676 0.87262 0.75648 0.93755 0.93679 0.98480 0.98453 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.13 71.98 0.51 -1.91 16 2 C -0.02 -0.50 0.75 -52.93 -0.04 -0.54 16 3 C -0.15 -3.95 8.13 71.98 0.59 -3.36 16 4 C -0.15 -3.94 8.17 71.98 0.59 -3.35 16 5 C -0.16 -4.63 4.77 -19.73 -0.09 -4.72 16 6 C -0.08 -1.86 8.97 22.25 0.20 -1.66 16 7 C -0.19 -4.39 10.04 22.29 0.22 -4.17 16 8 C -0.08 -2.15 10.04 22.25 0.22 -1.93 16 9 C -0.22 -7.25 9.32 22.40 0.21 -7.04 16 10 C 0.20 6.95 6.24 38.22 0.24 7.19 16 11 N -0.75 -28.32 4.27 -339.43 -1.45 -29.77 16 12 C 0.14 6.26 4.87 86.38 0.42 6.69 16 13 C 0.02 1.25 5.09 29.85 0.15 1.40 16 14 C -0.55 -30.84 9.11 25.60 0.23 -30.60 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.00 0.27 5.46 84.66 0.46 0.73 16 17 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 18 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H 0.06 1.09 7.55 -2.39 -0.02 1.07 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.09 7.48 -2.39 -0.02 1.08 16 25 H 0.04 1.30 5.20 -2.39 -0.01 1.29 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.04 1.27 5.18 -2.39 -0.01 1.25 16 31 H 0.15 2.65 5.89 -2.91 -0.02 2.63 16 32 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.11 3.69 6.74 -2.91 -0.02 3.67 16 35 H 0.40 15.00 3.29 -92.71 -0.30 14.70 16 36 H 0.04 1.92 8.11 -2.39 -0.02 1.90 16 37 H 0.04 1.95 7.78 -2.39 -0.02 1.93 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -62.62 312.87 5.48 -57.14 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.70 Total: 25.67 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 3.92 Total: -43.28 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.16 Total: -85.38 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -62.62 5.48 -57.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070569842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.808 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds