Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 N 1.46503 * 109.46987 * 119.99600 * 2 1 3 5 5 C 1.36932 * 120.00070 * 301.90123 * 4 2 1 6 6 H 1.07998 * 120.00340 * 324.86382 * 5 4 2 7 7 C 1.38822 * 119.99928 * 144.85819 * 5 4 2 8 8 N 1.31615 * 120.00352 * 157.16821 * 7 5 4 9 9 Si 1.86802 * 119.99765 * 337.17116 * 7 5 4 10 10 H 1.48494 * 109.47204 * 95.35399 * 9 7 5 11 11 H 1.48502 * 109.46916 * 215.35376 * 9 7 5 12 12 H 1.48500 * 109.47286 * 335.35004 * 9 7 5 13 13 C 1.46507 * 119.99872 * 121.90081 * 4 2 1 14 14 C 1.53000 * 109.46724 * 90.00110 * 13 4 2 15 15 C 1.53001 * 109.46955 * 179.97438 * 14 13 4 16 16 C 1.50700 * 109.47186 * 180.02562 * 15 14 13 17 17 C 1.38230 * 120.00358 * 90.00118 * 16 15 14 18 18 C 1.38231 * 120.00323 * 179.97438 * 17 16 15 19 19 C 1.38240 * 119.99801 * 359.97438 * 18 17 16 20 20 C 1.38229 * 119.99960 * 0.28106 * 19 18 17 21 21 C 1.38233 * 120.00169 * 359.50671 * 20 19 18 22 22 H 1.09001 * 109.47633 * 305.33037 * 1 2 3 23 23 H 1.08997 * 109.47174 * 65.33310 * 1 2 3 24 24 H 1.08999 * 109.47253 * 185.32493 * 1 2 3 25 25 H 1.08994 * 109.47498 * 239.99817 * 2 1 3 26 26 H 1.09002 * 109.47577 * 175.18563 * 3 2 1 27 27 H 1.08999 * 109.47363 * 295.18794 * 3 2 1 28 28 H 1.09005 * 109.47073 * 55.18571 * 3 2 1 29 29 H 0.96994 * 120.00580 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46926 * 330.00674 * 13 4 2 31 31 H 1.08998 * 109.46905 * 209.99804 * 13 4 2 32 32 H 1.08999 * 109.47476 * 60.00524 * 14 13 4 33 33 H 1.09002 * 109.47221 * 300.00029 * 14 13 4 34 34 H 1.09007 * 109.47109 * 60.00308 * 15 14 13 35 35 H 1.09002 * 109.47233 * 300.00087 * 15 14 13 36 36 H 1.08000 * 119.99645 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.00451 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.99709 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.99900 * 179.72824 * 20 19 18 40 40 H 1.07997 * 120.00240 * 180.27663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.6556 -0.2458 2.4395 6 1 1.5321 0.8118 2.6200 7 6 1.4466 -1.1544 3.4681 8 7 1.5440 -0.7639 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2672 -3.7483 3.0907 11 1 0.0769 -3.4529 4.0886 12 1 0.4039 -3.0060 1.7277 13 6 2.8946 -1.8570 1.0623 14 6 4.3542 -1.3987 1.0433 15 6 5.2694 -2.6168 0.9040 16 6 6.7071 -2.1655 0.8860 17 6 7.4133 -2.0597 2.0695 18 6 8.7322 -1.6462 2.0529 19 6 9.3452 -1.3391 0.8524 20 6 8.6374 -1.4398 -0.3306 21 6 7.3198 -1.8575 -0.3144 22 1 -0.3634 0.5943 0.8384 23 1 -0.3633 0.4289 -0.9339 24 1 -0.3634 -1.0232 0.0954 25 1 1.8933 -0.5138 -0.8899 26 1 3.1266 1.4438 0.0862 27 1 1.7488 1.9309 -0.9299 28 1 1.6079 1.9806 0.8438 29 1 1.3983 -1.3988 5.4398 30 1 2.6655 -2.3787 0.1331 31 1 2.7358 -2.5294 1.9054 32 1 4.5834 -0.8769 1.9725 33 1 4.5129 -0.7262 0.2003 34 1 5.0404 -3.1390 -0.0250 35 1 5.1106 -3.2889 1.7473 36 1 6.9345 -2.3000 3.0073 37 1 9.2839 -1.5631 2.9776 38 1 10.3756 -1.0156 0.8395 39 1 9.1150 -1.1957 -1.2681 40 1 6.7682 -1.9405 -1.2392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = 30.041623 kcal Electronic energy + Delta-G solvation = -18007.767217 eV Core-core repulsion = 15401.504484 eV Total energy + Delta-G solvation = -2606.262734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.13925 -36.98696 -34.14198 -32.26316 -30.98538 -30.74769 -28.82142 -26.28183 -25.46871 -23.50683 -22.42196 -21.61382 -20.43040 -19.37595 -16.74276 -16.24403 -15.48067 -15.03153 -14.93719 -14.67666 -13.73273 -13.38188 -13.27546 -13.11322 -12.99328 -12.66410 -12.22840 -12.01143 -11.75970 -11.73473 -11.36259 -11.07600 -10.87898 -10.84546 -10.72994 -10.48088 -10.39561 -10.17462 -9.87107 -9.58763 -9.32330 -8.78818 -8.51098 -8.41506 -6.77706 -5.93078 -3.30477 1.51492 1.53467 3.32922 3.49783 3.54616 3.93078 4.57193 4.90315 4.99056 5.04169 5.13565 5.26003 5.38082 5.50718 5.65660 5.75193 5.83793 5.88063 5.97736 6.05663 6.10804 6.20392 6.22829 6.30332 6.35174 6.44882 6.46546 6.58923 6.61370 6.63764 6.68751 6.74932 6.77562 6.97388 7.09712 7.13851 7.17840 7.19360 8.12016 8.45114 9.06982 9.79719 10.20093 11.23022 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.006395 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.576472 B = 4377.390066 C = 5010.298755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 C -0.153 4.153 4 N -0.603 5.603 5 C -0.254 4.254 6 H 0.080 0.920 7 C 0.032 3.968 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.287 1.287 11 H -0.305 1.305 12 H -0.271 1.271 13 C 0.138 3.862 14 C -0.125 4.125 15 C -0.086 4.086 16 C -0.066 4.066 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.121 4.121 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.261 0.739 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.436 -2.420 -9.870 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.325 5.325 5 C -0.383 4.383 6 H 0.097 0.903 7 C -0.168 4.168 8 N -0.545 5.545 9 Si 0.707 3.293 10 H -0.216 1.216 11 H -0.233 1.233 12 H -0.196 1.196 13 C 0.013 3.987 14 C -0.165 4.165 15 C -0.124 4.124 16 C -0.066 4.066 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.139 4.139 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.381 -2.445 -9.696 14.413 hybrid contribution -0.184 -0.994 0.022 1.011 sum 10.197 -3.439 -9.674 14.470 Atomic orbital electron populations 1.22122 0.97747 1.01287 0.99900 1.20374 0.92396 0.92238 0.88969 1.22163 1.00775 0.98367 0.99920 1.44260 1.52609 1.33179 1.02480 1.18689 1.41989 0.93120 0.84491 0.90295 1.25396 0.98734 0.97574 0.95052 1.69872 1.50841 1.35304 0.98511 0.86965 0.77644 0.86939 0.77745 1.21567 1.23344 1.19580 1.21204 0.88860 0.90086 0.98586 1.22141 0.95894 0.96029 1.02393 1.20713 0.90318 0.99098 1.02252 1.20066 0.96041 0.97502 0.93033 1.21147 0.94327 0.99905 0.98102 1.21126 0.95169 0.99543 0.97843 1.21060 0.99730 1.01662 0.92837 1.21079 0.94732 1.00218 0.97934 1.21045 0.94921 1.00292 0.97649 0.92115 0.94545 0.93542 0.93354 0.93413 0.94454 0.92525 0.92909 0.94567 0.93050 0.91168 0.92817 0.91571 0.91256 0.85953 0.86361 0.86597 0.86514 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.04 37.15 0.34 -2.56 16 2 C 0.17 3.30 3.36 -67.93 -0.23 3.07 16 3 C -0.15 -2.81 9.11 37.16 0.34 -2.48 16 4 N -0.60 -14.01 2.06 -165.66 -0.34 -14.36 16 5 C -0.25 -6.94 8.74 -15.06 -0.13 -7.07 16 6 H 0.08 2.34 7.17 -52.49 -0.38 1.96 16 7 C 0.03 0.91 5.31 -17.43 -0.09 0.82 16 8 N -0.90 -27.48 13.97 55.49 0.78 -26.71 16 9 Si 0.88 22.27 24.97 -169.99 -4.24 18.02 16 10 H -0.29 -7.06 6.66 56.52 0.38 -6.69 16 11 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.14 2.95 4.49 -4.04 -0.02 2.93 16 14 C -0.12 -2.35 5.52 -26.73 -0.15 -2.50 16 15 C -0.09 -1.36 5.34 -27.88 -0.15 -1.51 16 16 C -0.07 -1.00 5.13 -104.62 -0.54 -1.54 16 17 C -0.12 -1.72 9.70 -39.59 -0.38 -2.10 16 18 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 19 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 20 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 21 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 22 H 0.06 1.25 7.80 -51.93 -0.40 0.84 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.87 7.78 -51.93 -0.40 0.47 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.13 7.25 -51.93 -0.38 0.75 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.04 0.70 7.90 -51.93 -0.41 0.29 16 31 H 0.05 1.21 2.97 -51.93 -0.15 1.05 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -29.88 321.97 -8.33 -38.21 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.78 Total: 0.75 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.59 Total: -20.76 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.43 Total: -41.06 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.24 Total: 18.02 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.88 -8.33 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.248 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds