Wall clock time and date at job start Mon Mar 30 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 N 1.46503 * 109.46987 * 119.99600 * 2 1 3 5 5 C 1.36932 * 120.00070 * 301.90123 * 4 2 1 6 6 H 1.07998 * 120.00340 * 324.86382 * 5 4 2 7 7 C 1.38822 * 119.99928 * 144.85819 * 5 4 2 8 8 N 1.31615 * 120.00352 * 157.16821 * 7 5 4 9 9 Si 1.86802 * 119.99765 * 337.17116 * 7 5 4 10 10 H 1.48494 * 109.47204 * 95.35399 * 9 7 5 11 11 H 1.48502 * 109.46916 * 215.35376 * 9 7 5 12 12 H 1.48500 * 109.47286 * 335.35004 * 9 7 5 13 13 C 1.46507 * 119.99872 * 121.90081 * 4 2 1 14 14 C 1.53000 * 109.46724 * 90.00110 * 13 4 2 15 15 C 1.53001 * 109.46955 * 179.97438 * 14 13 4 16 16 C 1.50700 * 109.47186 * 180.02562 * 15 14 13 17 17 C 1.38230 * 120.00358 * 90.00118 * 16 15 14 18 18 C 1.38231 * 120.00323 * 179.97438 * 17 16 15 19 19 C 1.38240 * 119.99801 * 359.97438 * 18 17 16 20 20 C 1.38229 * 119.99960 * 0.28106 * 19 18 17 21 21 C 1.38233 * 120.00169 * 359.50671 * 20 19 18 22 22 H 1.09001 * 109.47633 * 305.33037 * 1 2 3 23 23 H 1.08997 * 109.47174 * 65.33310 * 1 2 3 24 24 H 1.08999 * 109.47253 * 185.32493 * 1 2 3 25 25 H 1.08994 * 109.47498 * 239.99817 * 2 1 3 26 26 H 1.09002 * 109.47577 * 175.18563 * 3 2 1 27 27 H 1.08999 * 109.47363 * 295.18794 * 3 2 1 28 28 H 1.09005 * 109.47073 * 55.18571 * 3 2 1 29 29 H 0.96994 * 120.00580 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46926 * 330.00674 * 13 4 2 31 31 H 1.08998 * 109.46905 * 209.99804 * 13 4 2 32 32 H 1.08999 * 109.47476 * 60.00524 * 14 13 4 33 33 H 1.09002 * 109.47221 * 300.00029 * 14 13 4 34 34 H 1.09007 * 109.47109 * 60.00308 * 15 14 13 35 35 H 1.09002 * 109.47233 * 300.00087 * 15 14 13 36 36 H 1.08000 * 119.99645 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.00451 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.99709 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.99900 * 179.72824 * 20 19 18 40 40 H 1.07997 * 120.00240 * 180.27663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.6556 -0.2458 2.4395 6 1 1.5321 0.8118 2.6200 7 6 1.4466 -1.1544 3.4681 8 7 1.5440 -0.7639 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2672 -3.7483 3.0907 11 1 0.0769 -3.4529 4.0886 12 1 0.4039 -3.0060 1.7277 13 6 2.8946 -1.8570 1.0623 14 6 4.3542 -1.3987 1.0433 15 6 5.2694 -2.6168 0.9040 16 6 6.7071 -2.1655 0.8860 17 6 7.4133 -2.0597 2.0695 18 6 8.7322 -1.6462 2.0529 19 6 9.3452 -1.3391 0.8524 20 6 8.6374 -1.4398 -0.3306 21 6 7.3198 -1.8575 -0.3144 22 1 -0.3634 0.5943 0.8384 23 1 -0.3633 0.4289 -0.9339 24 1 -0.3634 -1.0232 0.0954 25 1 1.8933 -0.5138 -0.8899 26 1 3.1266 1.4438 0.0862 27 1 1.7488 1.9309 -0.9299 28 1 1.6079 1.9806 0.8438 29 1 1.3983 -1.3988 5.4398 30 1 2.6655 -2.3787 0.1331 31 1 2.7358 -2.5294 1.9054 32 1 4.5834 -0.8769 1.9725 33 1 4.5129 -0.7262 0.2003 34 1 5.0404 -3.1390 -0.0250 35 1 5.1106 -3.2889 1.7473 36 1 6.9345 -2.3000 3.0073 37 1 9.2839 -1.5631 2.9776 38 1 10.3756 -1.0156 0.8395 39 1 9.1150 -1.1957 -1.2681 40 1 6.7682 -1.9405 -1.2392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:06 Heat of formation + Delta-G solvation = 14.841219 kcal Electronic energy + Delta-G solvation = -18008.426356 eV Core-core repulsion = 15401.504484 eV Total energy + Delta-G solvation = -2606.921873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18040 -38.70282 -35.48487 -34.24050 -32.55706 -31.73374 -30.34950 -27.80084 -27.10655 -25.25448 -23.41772 -23.05750 -21.65562 -21.16258 -18.41141 -17.54746 -17.25333 -16.54860 -16.22857 -15.93562 -15.34032 -14.94752 -14.77852 -14.38334 -14.23219 -14.05216 -13.88154 -13.69359 -13.32773 -13.10893 -12.88262 -12.60735 -12.45732 -12.26615 -12.21125 -12.05453 -11.81650 -11.69960 -11.58151 -11.34370 -11.15692 -10.53267 -9.78859 -9.56447 -8.71069 -8.13757 -5.46700 0.49442 0.53248 1.29543 1.40911 1.51347 2.45352 2.89696 3.10035 3.38862 3.90131 3.95453 4.19325 4.20375 4.28193 4.31416 4.44796 4.52224 4.59498 4.66383 4.67543 4.71316 4.78569 4.83202 4.93711 5.00714 5.07738 5.14736 5.18035 5.18519 5.21101 5.33019 5.50577 5.58197 5.61556 5.63169 5.64646 5.81036 6.02006 6.17600 6.25448 7.07082 7.73902 8.13681 9.06809 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.006395 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.576472 B = 4377.390066 C = 5010.298755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 C -0.145 4.145 4 N -0.615 5.615 5 C -0.230 4.230 6 H 0.042 0.958 7 C -0.027 4.027 8 N -0.955 5.955 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.316 1.316 12 H -0.258 1.258 13 C 0.131 3.869 14 C -0.108 4.108 15 C -0.077 4.077 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.122 4.122 21 C -0.127 4.127 22 H 0.033 0.967 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.760 -3.123 -13.249 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.337 5.337 5 C -0.361 4.361 6 H 0.059 0.941 7 C -0.222 4.222 8 N -0.600 5.600 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.246 1.246 12 H -0.182 1.182 13 C 0.006 3.994 14 C -0.148 4.148 15 C -0.115 4.115 16 C -0.089 4.089 17 C -0.160 4.160 18 C -0.145 4.145 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.145 4.145 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.716 -3.155 -13.127 17.876 hybrid contribution -0.511 -0.652 0.997 1.296 sum 11.205 -3.807 -12.130 16.946 Atomic orbital electron populations 1.22055 0.97138 1.00414 1.00834 1.20685 0.92972 0.92805 0.88430 1.22057 1.00054 0.97575 1.00655 1.44438 1.53401 1.33786 1.02120 1.18511 1.39751 0.91492 0.86309 0.94061 1.25960 0.99826 1.01631 0.94817 1.70004 1.53767 1.36701 0.99563 0.85942 0.77354 0.82384 0.77476 1.20443 1.24586 1.18201 1.21338 0.89794 0.89228 0.99048 1.21887 0.95171 0.97154 1.00628 1.20593 0.90559 0.97486 1.02903 1.20067 0.95668 0.99168 0.93950 1.21250 0.95575 1.01372 0.97827 1.21392 0.94564 0.99198 0.99381 1.21464 1.01075 1.00339 0.92281 1.21480 0.94250 0.98962 0.99296 1.21292 0.95766 0.99928 0.97503 0.94816 0.90665 0.94575 0.90219 0.94070 0.90746 0.95317 0.93268 0.91394 0.95328 0.95228 0.91788 0.89165 0.92533 0.87296 0.84732 0.83696 0.83524 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.04 71.98 0.65 -4.60 16 2 C 0.16 5.83 3.36 44.99 0.15 5.98 16 3 C -0.14 -5.07 9.11 71.98 0.66 -4.42 16 4 N -0.61 -28.17 2.06 -678.03 -1.40 -29.57 16 5 C -0.23 -12.95 8.74 84.04 0.73 -12.21 16 6 H 0.04 2.60 7.17 -2.91 -0.02 2.58 16 7 C -0.03 -1.61 5.31 84.87 0.45 -1.16 16 8 N -0.95 -60.79 13.97 21.65 0.30 -60.49 16 9 Si 0.94 47.00 24.97 68.60 1.71 48.71 16 10 H -0.28 -13.23 6.66 99.48 0.66 -12.57 16 11 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 12 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.13 5.38 4.49 86.38 0.39 5.77 16 14 C -0.11 -4.03 5.52 30.59 0.17 -3.86 16 15 C -0.08 -2.38 5.34 29.85 0.16 -2.22 16 16 C -0.09 -2.57 5.13 -19.87 -0.10 -2.67 16 17 C -0.14 -4.20 9.70 22.27 0.22 -3.99 16 18 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 19 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 20 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 21 C -0.13 -3.08 9.70 22.27 0.22 -2.87 16 22 H 0.03 1.37 7.80 -2.39 -0.02 1.35 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 2.52 7.78 -2.39 -0.02 2.50 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.03 1.14 7.25 -2.38 -0.02 1.12 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.07 2.38 7.90 -2.39 -0.02 2.36 16 31 H 0.03 1.32 2.97 -2.39 -0.01 1.32 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.31 8.09 -2.38 -0.02 2.29 16 35 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.11 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -67.26 321.97 5.91 -61.35 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.93 Total: 14.07 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.36 Total: -34.07 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -1.10 Total: -90.06 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.71 Total: 48.71 kcal Total: -67.26 5.91 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.188 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds