Wall clock time and date at job start Mon Mar 30 2020 05:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46674 * 2 1 4 4 C 1.38260 * 120.00106 * 265.02244 * 3 2 1 5 5 C 1.38212 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00085 * 359.73665 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.52159 * 6 5 4 8 8 C 1.38214 * 120.00231 * 84.99924 * 3 2 1 9 9 C 1.50703 * 119.99514 * 0.02562 * 8 3 2 10 10 N 1.46888 * 109.47236 * 80.02160 * 9 8 3 11 11 C 1.46912 * 110.99974 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47102 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47035 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47199 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99760 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00093 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47123 * 89.99763 * 18 16 14 20 20 H 1.48498 * 109.47388 * 210.00374 * 18 16 14 21 21 H 1.48506 * 109.46969 * 330.00130 * 18 16 14 22 22 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47450 * 299.99868 * 1 2 3 24 24 H 1.08997 * 109.47200 * 60.00398 * 1 2 3 25 25 H 1.09001 * 109.47450 * 240.00132 * 2 1 3 26 26 H 1.08997 * 109.47200 * 119.99602 * 2 1 3 27 27 H 1.08001 * 119.99581 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.99477 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.99823 * 180.27809 * 6 5 4 30 30 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 31 31 H 1.09005 * 109.46415 * 200.01930 * 9 8 3 32 32 H 1.08994 * 109.47113 * 320.01514 * 9 8 3 33 33 H 1.00904 * 111.00508 * 303.95237 * 10 9 8 34 34 H 1.08996 * 109.46854 * 299.99965 * 11 10 9 35 35 H 1.08997 * 109.46641 * 60.00012 * 11 10 9 36 36 H 1.08998 * 109.47632 * 300.00517 * 12 11 10 37 37 H 1.09004 * 109.46935 * 60.00267 * 12 11 10 38 38 H 1.09006 * 109.46706 * 299.99744 * 13 12 11 39 39 H 1.08993 * 109.47308 * 59.99678 * 13 12 11 40 40 H 0.96998 * 119.99245 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8207 3.3413 -1.1929 6 6 2.9474 4.0297 -0.0006 7 6 2.6243 3.4110 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 7 2.9120 0.5641 2.9141 11 6 2.5981 -0.1095 4.1814 12 6 3.7702 -1.0054 4.5867 13 6 3.4429 -1.7074 5.9062 14 6 4.5977 -2.5894 6.3058 15 1 5.4772 -2.6435 5.6813 16 6 4.5318 -3.3265 7.4691 17 7 3.4614 -3.2594 8.2303 18 14 5.9634 -4.4192 7.9649 19 1 6.9114 -3.6429 8.8037 20 1 5.4551 -5.5808 8.7379 21 1 6.6619 -4.9028 6.7468 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2575 1.5017 -2.1246 28 1 3.0768 3.8235 -2.1248 29 1 3.3027 5.0496 -0.0011 30 1 2.7269 3.9474 2.1241 31 1 1.6284 2.1916 3.2563 32 1 0.9051 0.8369 2.3564 33 1 3.1393 -0.1060 2.1947 34 1 2.4259 0.6371 4.9566 35 1 1.7022 -0.7178 4.0572 36 1 3.9421 -1.7519 3.8113 37 1 4.6663 -0.3974 4.7107 38 1 3.2709 -0.9610 6.6818 39 1 2.5469 -2.3153 5.7819 40 1 3.4150 -3.7782 9.0486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082774688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:04 Heat of formation + Delta-G solvation = -5.425146 kcal Electronic energy + Delta-G solvation = -17163.924861 eV Core-core repulsion = 14556.124173 eV Total energy + Delta-G solvation = -2607.800688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.82277 -36.38097 -34.34211 -33.50310 -31.96969 -30.33576 -29.44389 -26.71728 -24.80329 -23.74815 -22.19553 -21.79709 -20.64592 -19.95156 -16.56633 -16.32172 -16.15337 -15.38277 -14.92598 -14.59168 -14.23430 -13.92725 -13.86732 -13.53976 -13.19997 -12.99733 -12.45684 -12.17532 -12.01366 -11.93754 -11.62251 -11.39482 -11.34203 -10.87154 -10.79904 -10.73297 -10.54150 -10.46882 -9.67205 -9.35217 -9.05392 -8.86627 -8.68982 -8.32026 -8.11614 -5.97298 -3.99214 1.26942 1.33931 3.34214 3.40065 3.43868 3.65083 4.46545 4.56334 4.63252 4.76459 4.87952 4.90735 5.03507 5.19637 5.27727 5.37167 5.38545 5.44360 5.55816 5.64819 5.76137 5.80157 5.83471 5.91631 5.95497 6.05137 6.12000 6.33689 6.42568 6.44527 6.63174 6.74101 6.77823 6.94779 7.16049 7.34383 7.63336 7.71301 7.86287 8.03334 8.46742 9.08009 9.64664 11.14192 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035705 B = 0.003525 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.010992 B = 7940.613555 C = 8156.575510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.076 4.076 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.072 4.072 9 C 0.092 3.908 10 N -0.685 5.685 11 C 0.058 3.942 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.337 0.663 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 11.763 -18.507 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.076 4.076 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.145 4.145 7 C -0.118 4.118 8 C -0.073 4.073 9 C -0.037 4.037 10 N -0.317 5.317 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.225 12.189 -18.021 22.375 hybrid contribution 0.146 -1.209 0.067 1.220 sum -5.079 10.980 -17.954 21.650 Atomic orbital electron populations 1.21759 0.94679 1.01885 1.02097 1.20610 0.96314 0.92808 1.03001 1.19783 0.99008 0.96054 0.92800 1.20974 1.00296 0.95242 0.97290 1.21085 1.00186 0.94826 0.97976 1.21110 1.00874 0.99884 0.92636 1.21053 0.98123 0.94538 0.98094 1.19735 0.99091 0.94293 0.94169 1.20937 0.92861 0.96563 0.93311 1.60656 1.39075 1.25682 1.06255 1.22163 0.98140 0.96480 0.90232 1.21626 0.96287 0.96846 0.99741 1.19066 0.96813 0.94963 0.90705 1.21265 1.02386 1.25383 1.06630 0.92671 1.25033 0.95907 0.97054 0.96563 1.69972 1.27887 1.41807 1.13983 0.86592 0.82624 0.80193 0.78586 1.20657 1.21270 1.19877 0.92244 0.92426 0.92633 0.90934 0.90952 0.86359 0.86398 0.86288 0.85969 0.90447 0.94169 0.84417 0.91373 0.95730 0.93700 0.92521 0.96569 0.96798 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.75 37.16 0.36 -1.00 16 2 C -0.09 -0.91 5.39 -27.88 -0.15 -1.06 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.23 9.68 -39.58 -0.38 -1.62 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 7 C -0.10 -1.15 9.67 -39.58 -0.38 -1.53 16 8 C -0.07 -0.89 5.39 -104.62 -0.56 -1.45 16 9 C 0.09 1.19 5.07 -4.98 -0.03 1.17 16 10 N -0.68 -10.45 6.48 -115.06 -0.75 -11.19 16 11 C 0.06 1.02 5.69 -3.82 -0.02 1.00 16 12 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.56 6.72 -51.93 -0.35 0.22 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 26 H 0.07 0.81 5.44 -51.93 -0.28 0.53 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 31 H 0.08 0.99 8.00 -51.93 -0.42 0.57 16 32 H 0.04 0.50 5.85 -51.93 -0.30 0.20 16 33 H 0.34 4.96 6.89 -39.29 -0.27 4.69 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.71 325.78 -9.96 -40.68 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.65 Total: 0.18 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -3.19 Total: -24.94 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.01 Total: -37.78 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.71 -9.96 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.252 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds