Wall clock time and date at job start Mon Mar 30 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46674 * 2 1 4 4 C 1.38260 * 120.00106 * 265.02244 * 3 2 1 5 5 C 1.38212 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00085 * 359.73665 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.52159 * 6 5 4 8 8 C 1.38214 * 120.00231 * 84.99924 * 3 2 1 9 9 C 1.50703 * 119.99514 * 0.02562 * 8 3 2 10 10 N 1.46888 * 109.47236 * 80.02160 * 9 8 3 11 11 C 1.46912 * 110.99974 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47102 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47035 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47199 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99760 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00093 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47123 * 89.99763 * 18 16 14 20 20 H 1.48498 * 109.47388 * 210.00374 * 18 16 14 21 21 H 1.48506 * 109.46969 * 330.00130 * 18 16 14 22 22 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47450 * 299.99868 * 1 2 3 24 24 H 1.08997 * 109.47200 * 60.00398 * 1 2 3 25 25 H 1.09001 * 109.47450 * 240.00132 * 2 1 3 26 26 H 1.08997 * 109.47200 * 119.99602 * 2 1 3 27 27 H 1.08001 * 119.99581 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.99477 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.99823 * 180.27809 * 6 5 4 30 30 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 31 31 H 1.09005 * 109.46415 * 200.01930 * 9 8 3 32 32 H 1.08994 * 109.47113 * 320.01514 * 9 8 3 33 33 H 1.00904 * 111.00508 * 303.95237 * 10 9 8 34 34 H 1.08996 * 109.46854 * 299.99965 * 11 10 9 35 35 H 1.08997 * 109.46641 * 60.00012 * 11 10 9 36 36 H 1.08998 * 109.47632 * 300.00517 * 12 11 10 37 37 H 1.09004 * 109.46935 * 60.00267 * 12 11 10 38 38 H 1.09006 * 109.46706 * 299.99744 * 13 12 11 39 39 H 1.08993 * 109.47308 * 59.99678 * 13 12 11 40 40 H 0.96998 * 119.99245 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8207 3.3413 -1.1929 6 6 2.9474 4.0297 -0.0006 7 6 2.6243 3.4110 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 7 2.9120 0.5641 2.9141 11 6 2.5981 -0.1095 4.1814 12 6 3.7702 -1.0054 4.5867 13 6 3.4429 -1.7074 5.9062 14 6 4.5977 -2.5894 6.3058 15 1 5.4772 -2.6435 5.6813 16 6 4.5318 -3.3265 7.4691 17 7 3.4614 -3.2594 8.2303 18 14 5.9634 -4.4192 7.9649 19 1 6.9114 -3.6429 8.8037 20 1 5.4551 -5.5808 8.7379 21 1 6.6619 -4.9028 6.7468 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2575 1.5017 -2.1246 28 1 3.0768 3.8235 -2.1248 29 1 3.3027 5.0496 -0.0011 30 1 2.7269 3.9474 2.1241 31 1 1.6284 2.1916 3.2563 32 1 0.9051 0.8369 2.3564 33 1 3.1393 -0.1060 2.1947 34 1 2.4259 0.6371 4.9566 35 1 1.7022 -0.7178 4.0572 36 1 3.9421 -1.7519 3.8113 37 1 4.6663 -0.3974 4.7107 38 1 3.2709 -0.9610 6.6818 39 1 2.5469 -2.3153 5.7819 40 1 3.4150 -3.7782 9.0486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082774688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:03 Heat of formation + Delta-G solvation = -22.251925 kcal Electronic energy + Delta-G solvation = -17164.654525 eV Core-core repulsion = 14556.124173 eV Total energy + Delta-G solvation = -2608.530352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66089 -37.70295 -35.67852 -34.90474 -33.53245 -31.67678 -30.27611 -28.35840 -26.14236 -24.72683 -23.76564 -22.70876 -21.99369 -21.20980 -18.49731 -17.42757 -17.17725 -16.56467 -16.32350 -16.05561 -15.60680 -15.16275 -14.70750 -14.41446 -14.34521 -14.25762 -13.94633 -13.49815 -13.32564 -13.07694 -12.89374 -12.68429 -12.64693 -12.47170 -12.29989 -12.11024 -11.65102 -11.63664 -11.49898 -11.37048 -11.10026 -10.55520 -9.72609 -9.55173 -9.30886 -8.20363 -6.31432 0.44815 0.53159 1.40070 1.41702 1.52898 2.41076 2.80300 3.12689 3.40990 3.83343 3.87454 4.01881 4.08712 4.24043 4.31798 4.33299 4.41844 4.48835 4.57120 4.65270 4.70572 4.73644 4.78250 4.95996 5.03469 5.05666 5.08763 5.16093 5.21922 5.25543 5.35369 5.51270 5.63881 5.65323 5.74226 5.79268 5.85310 6.00174 6.17355 6.26732 6.41860 6.85270 7.37774 8.91605 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035705 B = 0.003525 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.010992 B = 7940.613555 C = 8156.575510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.085 4.085 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.092 4.092 9 C 0.096 3.904 10 N -0.686 5.686 11 C 0.072 3.928 12 C -0.092 4.092 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.341 0.659 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.049 0.951 37 H 0.051 0.949 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 11.958 -20.185 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.086 4.086 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.151 4.151 7 C -0.134 4.134 8 C -0.092 4.092 9 C -0.032 4.032 10 N -0.318 5.318 11 C -0.057 4.057 12 C -0.130 4.130 13 C -0.012 4.012 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.402 12.397 -19.717 23.703 hybrid contribution -0.140 -1.217 0.542 1.339 sum -4.542 11.181 -19.176 22.657 Atomic orbital electron populations 1.21736 0.94097 1.02271 1.02031 1.20620 0.96814 0.92320 1.02923 1.19956 0.99132 0.96511 0.92958 1.21274 0.99808 0.95696 0.97658 1.21452 0.99045 0.94692 0.98884 1.21402 1.00422 1.00912 0.92319 1.21231 0.98570 0.94570 0.98992 1.19722 1.00676 0.94869 0.93957 1.20908 0.92185 0.96082 0.94015 1.60581 1.40265 1.25537 1.05429 1.21863 0.96471 0.95872 0.91519 1.21375 0.97425 0.97047 0.97189 1.18966 0.95425 0.94151 0.92648 1.21701 1.03177 1.26113 1.07196 0.92310 1.25999 0.98893 0.98556 0.96471 1.70100 1.30046 1.42762 1.14491 0.85430 0.78902 0.78092 0.78527 1.19765 1.20606 1.18735 0.91632 0.93401 0.91754 0.89646 0.92328 0.84382 0.83841 0.84254 0.85783 0.90590 0.93757 0.83971 0.91795 0.95639 0.93201 0.93017 0.98990 0.98935 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.75 71.98 0.70 -1.80 16 2 C -0.09 -1.71 5.39 29.85 0.16 -1.55 16 3 C -0.09 -1.81 5.13 -19.86 -0.10 -1.91 16 4 C -0.13 -2.31 9.68 22.27 0.22 -2.10 16 5 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 6 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 7 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 8 C -0.09 -2.19 5.39 -19.86 -0.11 -2.29 16 9 C 0.10 2.48 5.07 85.56 0.43 2.92 16 10 N -0.69 -20.74 6.48 -517.94 -3.35 -24.09 16 11 C 0.07 2.54 5.69 86.30 0.49 3.04 16 12 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 13 C 0.03 1.39 4.97 29.85 0.15 1.54 16 14 C -0.54 -31.79 9.11 25.60 0.23 -31.55 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 17 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 18 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.05 0.91 6.72 -2.39 -0.02 0.89 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 26 H 0.06 1.28 5.44 -2.39 -0.01 1.26 16 27 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.12 2.58 8.04 -2.91 -0.02 2.56 16 31 H 0.08 1.95 8.00 -2.38 -0.02 1.93 16 32 H 0.04 1.10 5.85 -2.39 -0.01 1.09 16 33 H 0.34 9.88 6.89 -89.69 -0.62 9.26 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 38 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -65.42 325.78 2.80 -62.62 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.38 Total: 15.48 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 3.47 Total: -43.57 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.07 Total: -81.50 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.42 2.80 -62.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.365 kcal (2) G-P(sol) polarization free energy of solvation -65.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds